Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 0.0e+00 1270.4 647 100.0
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 5.0e-282 974.2 643 76.7
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 2.0e-278 962.2 627 77.8
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 3.2e-276 954.9 639 76.2
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 9.5e-273 943.3 639 75.7
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.6e-272 942.6 639 75.4
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 1.6e-267 926.0 635 75.9
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 6.8e-263 910.6 634 74.4
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.2e-262 909.8 619 75.1
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.3e-261 906.4 642 73.5
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 3.8e-261 904.8 642 73.5
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.6e-259 899.4 636 73.7
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 1.3e-258 896.3 636 73.9
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 1.5e-257 892.9 640 73.0
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 1.4e-255 886.3 621 73.9
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 1.4e-255 886.3 654 71.7
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 1.5e-254 882.9 635 71.7
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 3.8e-253 878.2 634 72.2
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.8e-253 878.2 634 72.4
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 4.9e-253 877.9 618 74.4
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 1.4e-252 876.3 638 72.9
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 3.2e-252 875.2 615 74.0
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 5.4e-252 874.4 621 73.4
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 3.5e-251 871.7 577 76.9
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 4.6e-251 871.3 629 72.8
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 1.0e-250 870.2 631 72.6
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.0e-250 870.2 573 77.0
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 1.0e-250 870.2 629 72.0
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 2.3e-250 869.0 623 72.2
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 1.5e-249 866.3 613 73.6
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 1.5e-249 866.3 636 71.2
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 2.5e-249 865.5 570 77.4
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 4.3e-249 864.8 630 71.6
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 4.3e-249 864.8 622 72.0
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 4.3e-249 864.8 580 77.4
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 9.6e-249 863.6 617 73.3
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 9.6e-249 863.6 621 71.8
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.3e-248 863.2 581 76.6
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.6e-248 862.8 570 77.4
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 1.6e-248 862.8 630 70.3
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 2.8e-248 862.1 594 75.1
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 4.8e-248 861.3 628 71.2
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 8.1e-248 860.5 590 75.4
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.8e-247 859.4 636 70.9
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 5.3e-247 857.8 635 70.2
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 1.2e-246 856.7 577 75.9
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.2e-246 856.7 635 70.2
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 2.0e-246 855.9 635 70.2
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.4e-246 855.1 609 73.1
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 7.6e-246 854.0 609 72.6
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 1.7e-245 852.8 609 72.6
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 2.9e-245 852.0 635 69.9
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 3.8e-245 851.7 565 75.8
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 4.9e-245 851.3 623 70.8
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 6.4e-245 850.9 639 69.8
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 1.2e-243 846.7 612 72.1
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 2.7e-243 845.5 632 70.7
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 6.0e-243 844.3 575 74.8
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 2.3e-242 842.4 654 68.5
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 9.6e-241 837.0 636 69.7
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 1.3e-240 836.6 620 70.6
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 1.6e-240 836.3 637 69.4
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 3.7e-240 835.1 589 73.3
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 4.8e-240 834.7 578 74.0
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 4.8e-240 834.7 602 71.3
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 2.4e-239 832.4 589 73.3
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 2.4e-239 832.4 633 69.2
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 3.1e-239 832.0 578 73.9
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 3.1e-239 832.0 571 73.4
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 4.0e-239 831.6 578 73.9
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 5.8e-238 827.8 589 73.0
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 5.8e-238 827.8 556 75.2
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 1.7e-237 826.2 574 73.5
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 2.9e-237 825.5 576 73.3
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 1.1e-236 823.5 578 73.4
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 4.2e-236 821.6 609 69.8
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 9.3e-236 820.5 579 73.2
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 1.0e-234 817.0 596 70.6
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 7.4e-233 810.8 617 68.6
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 1.6e-232 809.7 579 71.7
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 5.3e-231 804.7 582 72.3
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 9.0e-231 803.9 524 77.1
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 2.0e-230 802.7 546 74.5
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 6.5e-229 797.7 580 70.7
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 4.2e-228 795.0 611 67.4
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.6e-227 793.1 584 69.3
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 7.9e-227 790.8 654 64.4
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 2.3e-226 789.3 567 70.7
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.4e-223 780.0 619 66.1
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 6.9e-223 777.7 565 72.4
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 5.9e-222 774.6 611 65.5
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 5.0e-221 771.5 594 67.8
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 5.0e-221 771.5 570 70.5
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.1e-220 770.4 614 65.8
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.4e-218 763.5 600 67.3
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 2.3e-218 762.7 550 70.4
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 8.8e-218 760.8 574 69.3
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.1e-217 760.4 576 69.4
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.9e-217 759.6 574 69.5
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 2.5e-217 759.2 547 70.4
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 4.3e-217 758.4 544 70.6
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 1.3e-216 756.9 576 69.3
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 1.7e-216 756.5 575 68.0
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 3.7e-216 755.4 558 70.3
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 3.7e-216 755.4 558 70.3
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 4.8e-216 755.0 574 68.8
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 8.2e-216 754.2 612 65.2
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 8.2e-216 754.2 629 64.5
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 1.4e-215 753.4 574 68.3
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 1.8e-215 753.1 573 67.9
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 1.8e-215 753.1 573 67.9
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 2.4e-215 752.7 563 68.0
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 3.1e-215 752.3 593 66.3
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.1e-215 752.3 513 72.9
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 4.1e-215 751.9 574 68.5
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 4.1e-215 751.9 574 68.5
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 1.5e-214 750.0 574 67.9
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 2.0e-214 749.6 638 64.1
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 5.5e-212 741.5 570 67.4
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 3.6e-211 738.8 599 67.1
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 6.3e-208 728.0 523 70.6
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 2.6e-206 722.6 542 67.9
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 2.2e-205 719.5 570 66.0
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 7.2e-204 714.5 407 86.5
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 1.2e-203 713.8 521 68.7
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 4.7e-203 711.8 465 77.0
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 8.8e-202 707.6 523 68.6
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 1.5e-201 706.8 624 60.1
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.6e-201 706.1 574 65.2
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 6.3e-200 701.4 412 84.2
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 1.1e-199 700.7 577 66.0
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.4e-199 700.3 524 68.1
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.1e-199 699.1 523 68.1
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 4.5e-198 695.3 420 81.7
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.2e-193 680.6 620 59.0
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.6e-193 679.5 556 63.7
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 4.4e-193 678.7 634 58.5
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.4e-193 678.7 536 64.7
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 8.5e-189 664.5 618 59.4
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.8e-186 656.8 415 79.0
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.4e-183 645.2 580 59.8
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 1.2e-182 644.0 513 64.9
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 5.9e-182 641.7 495 66.1
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 5.2e-178 628.6 530 61.7
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 6.0e-166 588.6 487 65.7
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 3.9e-157 559.3 568 51.6
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.2e-150 537.7 478 57.5
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 2.3e-149 533.5 383 70.0
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 2.2e-144 516.9 524 55.3
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.9e-132 477.2 461 57.7
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 8.1e-123 445.3 349 68.2
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 1.1e-122 444.9 371 65.2
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 2.6e-97 360.5 239 73.6
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.4e-66 258.5 157 80.3
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 1.8e-61 241.5 145 84.1
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 4.3e-47 193.7 163 61.3
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 1.2e-46 192.2 163 58.9
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 1.2e-44 185.7 160 58.1
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 7.5e-44 183.0 160 57.5
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 3.6e-38 164.1 131 64.1
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 8.1e-38 162.9 98 81.6
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 3.9e-24 117.5 91 63.7
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.3e-23 113.2 318 28.6
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.4e-21 108.2 97 56.7
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 5.3e-21 107.1 115 53.0
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.3e-19 102.4 302 30.1
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 2.7e-17 94.7 60 78.3
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 3.9e-16 90.9 100 52.0
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.1e-16 90.5 217 29.5
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 5.6e-15 87.0 123 37.4
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 7.3e-15 86.7 70 74.3
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.6e-14 84.3 217 30.0
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 1.1e-13 82.8 88 55.7
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.0e-08 64.7 98 43.9
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 2.5e-07 61.6 55 50.9
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.8e-06 57.4 54 55.6


User provided reference genes

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