Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 4.5e-155 551.2 275 100.0
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 9.2e-84 314.3 170 88.8
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 1.2e-83 313.9 180 85.0
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 7.8e-83 311.2 166 89.8
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 7.8e-83 311.2 166 89.8
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 3.0e-82 309.3 166 89.2
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 5.1e-82 308.5 166 89.8
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 5.1e-82 308.5 166 89.2
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 5.1e-82 308.5 166 89.2
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 1.1e-81 307.4 166 88.6
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 1.1e-81 307.4 170 86.5
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 4.3e-81 305.4 166 88.6
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 5.6e-81 305.1 166 88.0
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 5.6e-81 305.1 166 89.2
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 4.7e-80 302.0 166 86.1
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 1.1e-79 300.8 166 86.7
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 5.2e-79 298.5 172 83.7
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 1.5e-78 297.0 166 85.5
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 2.6e-78 296.2 166 85.5
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 3.4e-78 295.8 166 85.5
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 1.7e-77 293.5 166 84.3
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 6.4e-77 291.6 160 87.5
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 7.1e-76 288.1 166 82.5
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 1.6e-75 287.0 166 81.9
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 4.6e-75 285.4 168 85.1
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 6.0e-75 285.0 166 83.1
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 7.8e-75 284.6 166 82.5
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 1.3e-74 283.9 167 82.0
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 1.7e-74 283.5 167 84.4
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 2.3e-74 283.1 167 82.6
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 6.6e-74 281.6 166 80.7
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 1.1e-73 280.8 167 82.6
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 1.5e-73 280.4 166 82.5
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 1.9e-73 280.0 167 82.6
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 2.5e-73 279.6 166 82.5
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 4.3e-73 278.9 166 79.5
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 5.6e-73 278.5 166 81.9
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 5.6e-73 278.5 166 82.5
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 9.6e-73 277.7 167 80.8
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 9.6e-73 277.7 166 78.9
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 1.2e-72 277.3 169 79.9
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 3.6e-72 275.8 166 80.1
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 1.1e-71 274.2 153 86.3
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 1.4e-71 273.9 168 79.2
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 1.8e-71 273.5 166 78.9
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 1.8e-71 273.5 167 78.4
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 1.8e-71 273.5 169 78.7
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 1.8e-71 273.5 166 81.3
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 3.1e-71 272.7 166 80.1
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 4.0e-71 272.3 167 79.6
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 4.0e-71 272.3 166 81.9
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 4.0e-71 272.3 171 80.1
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 5.2e-71 271.9 167 79.0
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 6.8e-71 271.6 166 80.1
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 8.9e-71 271.2 166 80.1
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 8.9e-71 271.2 166 80.1
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 1.2e-70 270.8 167 79.0
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 1.2e-70 270.8 166 78.9
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 2.0e-70 270.0 167 77.8
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.6e-70 269.6 166 79.5
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.6e-70 269.6 166 79.5
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 5.8e-70 268.5 167 78.4
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 7.6e-70 268.1 165 77.6
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 9.9e-70 267.7 167 78.4
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 2.2e-69 266.5 165 78.8
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 2.2e-69 266.5 167 77.8
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 2.9e-69 266.2 166 78.9
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 3.8e-69 265.8 166 77.7
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 3.8e-69 265.8 166 78.9
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 6.4e-69 265.0 166 78.9
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 6.4e-69 265.0 166 77.1
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 1.1e-68 264.2 165 76.4
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 1.9e-68 263.5 167 76.0
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.9e-68 263.5 167 76.6
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 2.4e-68 263.1 165 76.4
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 2.4e-68 263.1 165 76.4
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 2.4e-68 263.1 165 76.4
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 2.4e-68 263.1 165 76.4
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 2.4e-68 263.1 165 76.4
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 3.2e-68 262.7 151 85.4
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 4.2e-68 262.3 165 76.4
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 5.4e-68 261.9 166 78.3
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 7.1e-68 261.5 166 77.7
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 7.1e-68 261.5 166 74.7
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 7.1e-68 261.5 167 77.2
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 9.3e-68 261.2 165 75.8
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 9.3e-68 261.2 166 75.9
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 1.2e-67 260.8 165 75.8
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 1.2e-67 260.8 167 75.4
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 1.2e-67 260.8 167 76.6
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 1.2e-67 260.8 165 75.8
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 1.2e-67 260.8 166 76.5
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 2.1e-67 260.0 172 77.3
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.1e-67 260.0 167 75.4
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.1e-67 260.0 167 75.4
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.7e-67 259.6 167 75.4
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.7e-67 259.6 167 75.4
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 3.5e-67 259.2 167 75.4
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 3.5e-67 259.2 166 77.1
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 4.6e-67 258.8 167 74.9
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 6.0e-67 258.5 167 74.9
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 7.8e-67 258.1 165 74.5
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.0e-66 257.7 166 72.3
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 3.0e-66 256.1 166 76.5
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 5.1e-66 255.4 167 74.9
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 6.6e-66 255.0 151 83.4
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 1.1e-65 254.2 167 74.3
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 1.5e-65 253.8 167 74.3
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 4.3e-65 252.3 165 75.8
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 1.3e-64 250.8 168 72.0
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 1.6e-64 250.4 162 71.6
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 2.1e-64 250.0 164 73.8
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 2.1e-64 250.0 162 72.2
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 3.6e-64 249.2 218 61.5
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 6.2e-64 248.4 166 73.5
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 8.1e-64 248.1 168 72.0
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 1.1e-63 247.7 180 68.3
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 1.8e-63 246.9 166 72.3
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 1.8e-63 246.9 168 72.0
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 4.0e-63 245.7 166 71.7
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 6.9e-63 245.0 153 76.5
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 6.9e-63 245.0 153 76.5
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 1.2e-62 244.2 168 71.4
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 1.5e-62 243.8 166 71.7
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 1.3e-61 240.7 157 75.8
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 1.3e-61 240.7 156 75.0
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 2.1e-59 233.4 167 65.3
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 2.7e-59 233.0 151 74.2
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 2.3e-58 229.9 166 67.5
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 2.3e-58 229.9 166 67.5
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 1.5e-57 227.3 166 65.1
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 8.1e-56 221.5 165 64.2
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 8.1e-56 221.5 164 64.6
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 5.8e-54 215.3 172 62.8
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 5.8e-54 215.3 172 61.6
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 1.4e-52 210.7 113 87.6
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 1.4e-52 210.7 113 87.6
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 1.6e-51 207.2 141 71.6
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 6.2e-48 195.3 113 83.2
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 8.4e-45 184.9 114 78.1
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 1.4e-44 184.1 116 78.4
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 7.1e-44 181.8 112 75.9
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.3e-42 177.6 113 74.3
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 1.9e-41 173.7 180 48.3
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 1.4e-36 157.5 86 84.9
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 4.2e-36 156.0 98 72.4
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 5.5e-36 155.6 165 50.3
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.6e-35 154.1 105 67.6
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 2.7e-35 153.3 102 69.6
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 3.1e-31 139.8 95 72.6
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 2.4e-23 113.6 110 55.5
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 2.6e-22 110.2 60 80.0
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 3.4e-22 109.8 156 39.1
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 1.6e-19 100.9 116 44.0
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 2.7e-19 100.1 128 43.0
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 3.6e-19 99.8 87 56.3
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 3.6e-19 99.8 155 37.4
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 2.8e-16 90.1 54 81.5
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 2.6e-14 83.6 52 80.8
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 5.9e-14 82.4 86 47.7
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 1.7e-13 80.9 57 70.2
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 1.6e-11 74.3 50 74.0
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 2.3e-10 70.5 62 61.3


User provided reference genes

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