Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 5.9e-158 560.8 287 100.0
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 1.2e-131 473.4 289 85.1
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 1.1e-116 423.7 311 74.3
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 2.1e-115 419.5 290 74.5
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 2.8e-115 419.1 283 77.0
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 3.6e-115 418.7 300 73.0
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 2.3e-114 416.0 288 74.7
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 2.0e-113 412.9 279 76.3
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 3.4e-113 412.1 288 73.6
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 1.4e-111 406.8 280 75.0
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 5.4e-111 404.8 288 72.9
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 9.2e-111 404.1 280 72.9
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 1.2e-110 403.7 287 72.8
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 1.6e-110 403.3 292 71.9
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 2.1e-110 402.9 284 73.2
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 2.1e-110 402.9 294 73.5
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 7.8e-110 401.0 284 72.5
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 7.8e-110 401.0 293 72.4
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 3.9e-109 398.7 281 74.0
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 3.9e-109 398.7 287 72.5
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 5.1e-109 398.3 253 78.3
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 8.6e-109 397.5 275 74.5
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 4.3e-108 395.2 286 72.0
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 7.3e-108 394.4 289 72.3
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 9.5e-108 394.0 286 71.3
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 1.6e-107 393.3 246 78.0
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 1.6e-107 393.3 279 73.1
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 1.6e-107 393.3 310 68.1
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 4.7e-107 391.7 289 69.6
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.8e-106 389.8 258 76.0
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 1.8e-106 389.8 292 70.5
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 4.0e-106 388.7 287 68.6
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 4.0e-106 388.7 286 71.3
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 6.8e-106 387.9 288 68.8
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 8.9e-106 387.5 280 71.4
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 1.2e-105 387.1 286 71.0
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 2.6e-105 386.0 258 74.8
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 2.6e-105 386.0 291 69.4
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 3.4e-105 385.6 241 78.4
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 9.9e-105 384.0 273 73.3
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 1.3e-104 383.6 275 71.3
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 1.7e-104 383.3 273 71.8
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 2.2e-104 382.9 258 75.2
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 4.9e-104 381.7 309 65.7
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 6.4e-104 381.3 256 75.0
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 8.4e-104 380.9 264 73.9
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 1.1e-103 380.6 238 79.0
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 1.4e-103 380.2 305 66.2
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 1.9e-103 379.8 284 69.7
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 4.2e-103 378.6 280 71.8
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 5.4e-103 378.3 278 69.4
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 1.2e-102 377.1 289 69.2
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 1.6e-102 376.7 260 72.3
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 2.1e-102 376.3 243 77.4
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 3.5e-102 375.6 288 69.1
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 7.8e-102 374.4 296 69.6
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 1.3e-101 373.6 292 67.1
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.3e-101 373.6 258 72.5
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 6.6e-101 371.3 279 69.2
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 6.6e-101 371.3 289 66.8
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 1.5e-100 370.2 258 72.1
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 2.5e-100 369.4 285 68.8
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 4.3e-100 368.6 280 70.4
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 9.6e-100 367.5 294 67.7
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 1.2e-99 367.1 256 72.7
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 1.2e-99 367.1 290 68.3
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 1.2e-99 367.1 290 68.6
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 1.6e-99 366.7 282 69.5
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 3.6e-99 365.5 257 71.6
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 1.8e-98 363.2 280 69.3
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 2.4e-98 362.8 234 79.1
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 3.1e-98 362.5 276 70.3
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 9.0e-98 360.9 289 68.5
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 9.0e-98 360.9 284 68.3
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 2.6e-97 359.4 276 70.3
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 7.6e-97 357.8 307 64.8
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 1.9e-95 353.2 250 71.2
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 2.4e-95 352.8 223 76.7
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 1.2e-94 350.5 285 67.4
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 3.5e-94 349.0 221 77.8
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 3.5e-94 349.0 277 67.1
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 4.3e-92 342.0 287 63.4
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 9.6e-92 340.9 254 68.5
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 1.1e-90 337.4 236 71.2
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 1.2e-89 334.0 258 69.8
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 2.6e-89 332.8 224 75.9
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 4.5e-89 332.0 224 73.7
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 1.7e-88 330.1 291 61.5
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 2.9e-88 329.3 259 66.0
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 2.9e-88 329.3 243 67.9
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 1.4e-87 327.0 256 66.0
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 7.1e-87 324.7 336 56.5
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 2.7e-86 322.8 197 79.7
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 1.8e-82 310.1 274 63.5
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 4.5e-81 305.4 275 59.6
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 8.4e-80 301.2 234 67.1
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 3.2e-79 299.3 196 75.5
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 1.0e-77 294.3 286 59.8
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 1.8e-77 293.5 173 81.5
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 4.3e-76 288.9 198 72.2
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 1.6e-75 287.0 294 58.8
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 5.3e-74 282.0 196 70.4
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 2.6e-73 279.6 210 69.0
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 3.8e-72 275.8 250 60.8
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 6.0e-70 268.5 283 51.6
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.3e-69 266.5 176 75.6
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 1.3e-59 234.2 246 48.4
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 8.2e-59 231.5 225 55.6
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 6.9e-58 228.4 237 48.1
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 2.9e-56 223.0 246 46.7
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 5.7e-52 208.8 197 56.9
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 5.0e-48 195.7 167 56.3
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 8.5e-48 194.9 298 47.0
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.2e-43 180.3 139 70.5
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 5.0e-40 169.1 275 44.7
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 6.5e-32 142.1 92 71.7
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 2.6e-28 130.2 124 63.7
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 2.6e-28 130.2 93 72.0
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 2.7e-25 120.2 124 59.7
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 5.5e-23 112.5 75 69.3
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 8.0e-22 108.6 73 76.7
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 1.0e-21 108.2 124 54.8
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.6e-20 103.6 168 37.5
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-20 103.2 93 51.6
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 3.7e-19 99.8 140 48.6
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 4.1e-18 96.3 81 61.7
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 4.1e-18 96.3 292 32.9
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 7.8e-17 92.0 110 48.2
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 2.9e-16 90.1 59 72.9
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 8.6e-16 88.6 248 29.4
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 1.9e-15 87.4 89 55.1
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 1.8e-13 80.9 55 67.3
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 3.1e-13 80.1 56 67.9
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 3.1e-13 80.1 56 67.9
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 4.0e-13 79.7 50 74.0
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 4.0e-13 79.7 139 41.0
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 5.2e-13 79.3 102 47.1
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 1.5e-12 77.8 49 73.5
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 1.7e-11 74.3 102 43.1
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.1e-10 71.6 59 50.8
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 3.2e-10 70.1 89 53.9
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 1.2e-09 68.2 257 21.8
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 3.5e-09 66.6 54 68.5
SEGI_17465 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 7.8e-09 65.5 51 64.7
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 1.0e-08 65.1 231 21.2
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 2.3e-08 63.9 218 21.6
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 3.9e-08 63.2 93 40.9
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 6.6e-08 62.4 254 22.4
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 1.9e-07 60.8 216 22.2
SGA_v2.0_scaffold467G52044 Striga asiatica HOM05D000074 ORTHO05D006342 2.5e-07 60.5 43 65.1
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 3.3e-07 60.1 220 21.4
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 9.5e-07 58.5 229 27.1
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 1.6e-06 57.8 194 23.2
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 3.6e-06 56.6 214 22.0


User provided reference genes

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