Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 7.4e-222 773.5 368 100.0
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 3.4e-219 764.6 380 96.8
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 4.7e-160 568.2 372 72.0
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 6.4e-157 557.8 372 71.8
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 2.5e-145 519.2 384 66.7
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 4.8e-144 515.0 375 65.3
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 3.2e-140 502.3 378 64.3
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 1.9e-137 493.0 378 63.8
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 7.4e-137 491.1 378 63.8
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 1.8e-135 486.5 377 61.0
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 2.4e-135 486.1 377 61.0
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 1.5e-134 483.4 377 62.6
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 1.5e-134 483.4 377 60.7
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 2.0e-134 483.0 377 61.5
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 2.6e-134 482.6 378 61.6
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 5.8e-134 481.5 382 61.8
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 5.8e-134 481.5 382 61.5
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 2.2e-133 479.6 399 59.4
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 4.2e-132 475.3 377 60.2
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 1.2e-131 473.8 373 60.9
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 1.0e-130 470.7 379 61.7
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 3.0e-130 469.2 374 61.2
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 1.9e-129 466.5 382 59.7
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 9.6e-129 464.2 376 60.1
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 1.3e-128 463.8 374 60.2
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.6e-128 463.4 303 77.6
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 1.1e-127 460.7 420 54.5
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 1.1e-127 460.7 377 58.9
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 2.4e-127 459.5 377 57.3
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 1.2e-126 457.2 377 60.5
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 3.4e-126 455.7 385 58.7
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 4.5e-126 455.3 378 56.1
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 1.3e-125 453.8 362 62.7
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 1.3e-125 453.8 377 57.3
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 1.1e-124 450.7 379 56.5
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 3.2e-124 449.1 377 57.0
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 5.5e-124 448.4 380 56.1
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 5.5e-124 448.4 377 57.3
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 7.1e-124 448.0 379 57.3
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 9.3e-124 447.6 378 56.3
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 1.2e-123 447.2 377 56.2
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 1.6e-123 446.8 379 57.3
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 2.1e-123 446.4 399 54.4
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 2.1e-123 446.4 360 58.9
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 6.0e-123 444.9 377 57.0
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 1.0e-122 444.1 380 55.8
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 1.3e-122 443.7 378 55.3
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 1.8e-122 443.4 379 56.7
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.5e-121 440.3 380 56.6
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 1.9e-121 439.9 377 55.4
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 4.3e-121 438.7 381 54.6
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 4.3e-121 438.7 406 55.4
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 5.7e-121 438.3 468 48.9
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 9.7e-121 437.6 377 57.6
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 1.6e-120 436.8 386 55.7
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 2.2e-120 436.4 393 56.0
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 3.7e-120 435.6 378 56.1
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 1.4e-119 433.7 380 55.3
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 1.4e-119 433.7 380 55.3
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 9.0e-119 431.0 378 54.5
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 9.0e-119 431.0 385 55.3
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 9.0e-119 431.0 379 56.5
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 7.6e-118 427.9 383 54.3
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 1.7e-117 426.8 372 55.4
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 1.7e-117 426.8 404 52.7
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.4e-116 423.7 385 55.1
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 1.4e-116 423.7 378 55.8
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 3.2e-116 422.5 383 54.8
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 1.6e-115 420.2 381 55.6
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 3.6e-115 419.1 379 55.4
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 7.9e-115 417.9 373 55.2
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 8.8e-114 414.5 377 53.3
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 5.7e-113 411.8 382 54.7
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 2.8e-112 409.5 343 59.2
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 4.8e-112 408.7 344 58.1
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 1.5e-110 403.7 380 52.9
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 1.9e-108 396.7 330 58.5
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 3.2e-108 396.0 344 55.8
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.2e-107 394.0 303 62.7
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 1.2e-107 394.0 334 57.2
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 5.7e-105 385.2 380 51.1
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 2.5e-100 369.8 275 65.1
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 1.6e-94 350.5 321 54.2
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 2.0e-94 350.1 379 48.5
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 1.7e-93 347.1 352 50.3
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 1.8e-90 337.0 397 47.1
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 8.8e-90 334.7 309 54.0
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 3.7e-88 329.3 368 45.4
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 5.9e-86 322.0 295 52.2
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 6.8e-82 308.5 379 42.7
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.2e-81 307.8 392 43.1
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 5.7e-81 305.4 277 54.5
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 2.8e-80 303.1 387 43.7
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 2.4e-79 300.1 270 54.4
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 1.7e-77 293.9 378 40.2
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 3.8e-77 292.7 248 56.5
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 1.8e-66 257.3 354 39.5
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 7.5e-65 251.9 377 38.5
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 7.5e-65 251.9 337 41.8
SalBow7G1134 Salvia bowleyana HOM05D001404 ORTHO05D009009 7.8e-62 241.9 211 61.1
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 5.2e-58 229.2 215 52.6
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 2.9e-40 170.2 295 34.2
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 1.9e-36 157.5 135 60.7
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.1e-34 151.8 152 48.0
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 1.7e-32 144.4 357 32.5
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 2.9e-32 143.7 362 30.9
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 4.9e-32 142.9 362 31.2
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 8.4e-32 142.1 356 30.6
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 8.4e-32 142.1 356 30.6
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 8.4e-32 142.1 360 29.7
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 8.4e-32 142.1 355 31.0
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 1.1e-31 141.7 355 31.3
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 1.4e-31 141.4 364 31.3
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 1.4e-31 141.4 357 29.4
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 1.4e-31 141.4 355 31.0
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 1.4e-31 141.4 355 31.3
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 1.9e-31 141.0 359 33.1
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 4.2e-31 139.8 357 29.4
AUR62026503 Chenopodium quinoa HOM05D001404 ORTHO05D009009 4.2e-31 139.8 173 46.2
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 4.2e-31 139.8 355 30.7
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 7.1e-31 139.0 365 33.2
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 1.2e-30 138.3 360 32.8
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 1.2e-30 138.3 363 32.2
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 1.2e-30 138.3 363 32.2
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 1.2e-30 138.3 359 32.9
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 1.6e-30 137.9 355 30.4
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 2.1e-30 137.5 363 30.9
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 2.7e-30 137.1 359 29.5
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 7.8e-30 135.6 363 31.7
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 1.0e-29 135.2 361 30.5
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 1.0e-29 135.2 363 32.0
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 1.3e-29 134.8 362 28.7
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 1.7e-29 134.4 358 29.3
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 1.7e-29 134.4 355 31.8
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 3.0e-29 133.7 368 31.8
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 3.0e-29 133.7 359 31.2
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 3.0e-29 133.7 359 28.7
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 3.9e-29 133.3 358 30.2
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 5.1e-29 132.9 361 30.2
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 5.1e-29 132.9 359 31.5
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 5.1e-29 132.9 361 30.7
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 5.1e-29 132.9 361 31.6
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 6.6e-29 132.5 359 31.5
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 6.6e-29 132.5 359 31.5
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 8.7e-29 132.1 363 31.4
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 1.9e-28 131.0 357 30.5
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 1.9e-28 131.0 356 29.5
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 5.6e-28 129.4 340 31.8
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 5.6e-28 129.4 361 29.4
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 9.6e-28 128.6 363 31.7
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 1.3e-27 128.3 359 29.2
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 1.3e-27 128.3 356 30.6
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 1.6e-27 127.9 361 31.0
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 3.6e-27 126.7 364 30.5
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 4.8e-27 126.3 359 31.2
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 6.2e-27 125.9 355 29.0
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 6.2e-27 125.9 361 30.2
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 1.8e-26 124.4 356 30.6
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 2.4e-26 124.0 365 28.8
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 4.0e-26 123.2 353 30.3
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 9.0e-26 122.1 358 27.7
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 9.0e-26 122.1 357 30.8
MD13G1085400 Malus domestica HOM05D001404 ORTHO05D009009 2.6e-25 120.6 94 59.6
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 9.3e-23 112.1 356 27.2
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 1.1e-20 105.1 359 28.1
SEGI_39493 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 1.4e-18 98.2 130 43.1
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 2.6e-17 94.0 234 29.1
TPR.G17205 Trifolium pratense HOM05D001404 ORTHO05D009009 3.4e-17 93.6 69 60.9
ATR0712G115 Amborella trichopoda HOM05D001404 ORTHO05D009009 5.8e-17 92.8 69 60.9
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 7.6e-17 92.4 279 29.4
Lsat_1_v5_gn_1_78741 Lactuca sativa HOM05D000538 ORTHO05D009009 7.6e-17 92.4 64 64.1
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 1.3e-16 91.7 435 24.8
SEGI_25303 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 4.9e-16 89.7 88 51.1
SEGI_33690 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 4.9e-16 89.7 88 51.1
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 1.0e-13 82.0 193 31.6
HanXRQChr17g0570121 Helianthus annuus HOM05D001404 ORTHO05D009009 1.9e-12 77.8 82 43.9
Duzib251G0488 Durio zibethinus HOM05D001404 ORTHO05D009009 9.6e-12 75.5 115 40.0
Lsat_1_v5_gn_1_40080 Lactuca sativa HOM05D000207 ORTHO05D000191 1.0e-08 65.5 51 54.9
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 1.0e-08 65.5 118 33.9
C06p36300 Brassica napus HOM05D001404 ORTHO05D009009 8.4e-08 62.4 50 58.0
Cre02.g093401 Chlamydomonas reinhardtii HOM05D001404 ORTHO05D140787 1.6e-06 58.2 57 47.4
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 2.7e-06 57.4 184 27.2
Oeu048569.1 Olea europaea HOM05D000240 ORTHO05D002608 2.7e-06 57.4 38 65.8


User provided reference genes

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