Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 3.7e-174 614.8 310 100.0
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 9.7e-106 387.5 327 63.6
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.3e-105 387.1 327 63.6
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 2.8e-105 386.0 310 65.8
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 3.1e-104 382.5 312 65.1
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 3.1e-104 382.5 294 66.3
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 3.1e-104 382.5 310 63.5
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 4.1e-104 382.1 294 67.0
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 1.4e-101 373.6 296 65.2
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 1.6e-100 370.2 326 61.0
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 2.1e-100 369.8 306 63.7
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 3.6e-100 369.0 312 63.1
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 3.6e-100 369.0 326 61.0
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 2.3e-99 366.3 310 62.9
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 6.7e-99 364.8 320 61.2
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 1.5e-98 363.6 297 64.0
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 2.5e-98 362.8 293 64.2
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 4.3e-98 362.1 293 63.8
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 5.7e-98 361.7 307 63.8
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 9.7e-98 360.9 293 63.5
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 1.3e-97 360.5 293 63.8
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 1.3e-97 360.5 318 61.6
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.2e-97 359.8 293 63.8
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 2.2e-97 359.8 313 61.3
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 2.2e-97 359.8 295 63.7
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 2.8e-97 359.4 322 59.9
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 3.7e-97 359.0 294 63.9
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 6.3e-97 358.2 313 59.7
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 8.2e-97 357.8 321 60.1
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 8.2e-97 357.8 298 62.4
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 8.2e-97 357.8 297 62.0
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 8.2e-97 357.8 307 63.8
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 1.1e-96 357.5 294 62.9
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 1.1e-96 357.5 309 61.2
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 1.4e-96 357.1 311 60.8
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 1.8e-96 356.7 334 59.0
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 3.1e-96 355.9 313 60.4
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 3.1e-96 355.9 313 60.1
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 4.1e-96 355.5 297 62.6
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 5.3e-96 355.1 301 63.5
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 5.3e-96 355.1 322 58.4
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 6.9e-96 354.8 294 62.2
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 6.9e-96 354.8 296 63.9
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 9.1e-96 354.4 294 62.6
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 1.2e-95 354.0 292 62.7
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 1.5e-95 353.6 292 63.7
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 1.5e-95 353.6 288 64.2
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 2.0e-95 353.2 296 63.5
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 2.6e-95 352.8 300 61.3
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 3.4e-95 352.4 320 59.7
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 3.4e-95 352.4 308 60.4
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 3.4e-95 352.4 315 59.7
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 4.5e-95 352.1 311 61.7
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 4.5e-95 352.1 294 62.6
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 4.5e-95 352.1 311 60.1
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 7.7e-95 351.3 320 59.4
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 1.0e-94 350.9 294 62.2
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 1.0e-94 350.9 314 58.3
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 1.3e-94 350.5 316 59.5
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 1.7e-94 350.1 320 59.4
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 2.2e-94 349.7 294 62.2
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 2.2e-94 349.7 313 59.4
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 2.9e-94 349.4 316 59.5
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 5.0e-94 348.6 294 61.9
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 5.0e-94 348.6 314 59.6
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 5.0e-94 348.6 294 61.6
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 5.0e-94 348.6 314 59.2
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 8.5e-94 347.8 305 61.0
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 1.1e-93 347.4 320 59.1
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 1.1e-93 347.4 299 62.2
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 1.4e-93 347.1 314 59.2
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 1.4e-93 347.1 312 59.6
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 2.5e-93 346.3 298 60.7
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 3.2e-93 345.9 310 59.4
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 3.2e-93 345.9 310 59.4
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 3.2e-93 345.9 302 61.6
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 4.2e-93 345.5 294 61.2
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 4.2e-93 345.5 318 58.5
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 7.2e-93 344.7 295 60.7
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 7.2e-93 344.7 310 59.0
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 7.2e-93 344.7 314 58.6
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 7.2e-93 344.7 310 59.4
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 9.4e-93 344.4 309 60.2
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 1.2e-92 344.0 329 56.8
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 1.2e-92 344.0 302 60.3
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 2.1e-92 343.2 313 58.1
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 4.7e-92 342.0 311 59.5
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 4.7e-92 342.0 294 61.2
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 3.9e-91 339.0 287 62.0
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 5.1e-91 338.6 291 60.5
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 6.7e-91 338.2 287 61.7
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 8.8e-91 337.8 310 59.4
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 8.8e-91 337.8 305 58.7
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 9.7e-90 334.3 306 60.1
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 1.3e-89 334.0 291 62.2
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 3.7e-89 332.4 296 58.8
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 1.1e-88 330.9 269 62.8
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 4.1e-88 328.9 392 50.0
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 6.9e-88 328.2 271 62.7
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 1.7e-86 323.6 307 57.3
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 3.8e-86 322.4 351 52.1
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 8.5e-86 321.2 303 58.4
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 3.2e-85 319.3 271 62.0
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 2.7e-84 316.2 270 63.3
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 4.4e-82 308.9 290 56.6
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 3.7e-81 305.8 300 57.7
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 4.8e-81 305.4 291 56.7
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 6.3e-81 305.1 294 57.1
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 5.3e-80 302.0 315 53.7
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 2.2e-78 296.6 298 53.7
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 1.4e-75 287.3 260 60.8
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 5.2e-75 285.4 290 56.6
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 8.8e-75 284.6 271 54.2
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 1.5e-74 283.9 298 55.0
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 1.3e-73 280.8 272 57.7
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 5.9e-71 271.9 250 60.0
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 2.0e-66 256.9 230 59.6
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 1.7e-65 253.8 225 60.0
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 2.8e-65 253.1 214 63.1
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 1.4e-64 250.8 231 60.6
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.0e-54 218.0 287 46.0
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 2.5e-53 213.4 164 68.3
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 2.5e-53 213.4 185 61.6
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.6e-44 184.1 153 62.1
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 1.3e-41 174.5 148 62.2
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.3e-38 163.7 142 57.7
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 3.3e-37 159.8 111 68.5
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 7.3e-37 158.7 116 65.5
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 1.8e-35 154.1 136 62.5
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 3.7e-33 146.4 111 61.3
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.9e-32 144.1 143 52.4
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 1.7e-25 120.9 85 68.2
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 2.4e-24 117.1 335 32.2
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 1.5e-21 107.8 120 50.8
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 1.2e-20 104.8 311 27.7
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 1.1e-19 101.7 129 44.2
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 5.2e-19 99.4 112 49.1
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 1.5e-18 97.8 322 29.2
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 1.7e-17 94.4 76 60.5
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 5.4e-16 89.4 86 52.3
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 6.6e-14 82.4 53 77.4
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 5.6e-13 79.3 49 77.6
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 7.3e-13 79.0 49 69.4
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 2.8e-12 77.0 53 67.9
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 3.1e-11 73.6 84 44.0
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 2.0e-10 70.9 103 44.7
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 2.6e-10 70.5 104 45.2
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 2.7e-07 60.5 40 65.0


User provided reference genes

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