Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 0.0e+00 1414.8 710 100.0
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 0.0e+00 1150.6 717 80.8
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 0.0e+00 1111.7 721 78.2
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 0.0e+00 1078.9 718 75.1
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 9.7e-312 1072.8 741 75.0
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 6.5e-307 1057.0 716 75.8
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 1.7e-294 1015.8 726 71.1
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.2e-294 1015.4 727 71.5
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 2.6e-292 1008.4 698 74.2
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.1e-290 1003.0 725 71.3
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 7.2e-290 1000.3 724 70.0
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 2.3e-288 995.3 701 72.5
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 1.5e-287 992.6 719 70.8
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 1.3e-286 989.6 720 70.4
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 1.4e-285 986.1 698 71.6
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 4.1e-285 984.6 725 69.8
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 1.6e-284 982.6 695 70.9
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 3.5e-284 981.5 725 69.7
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 5.9e-284 980.7 724 68.6
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 7.7e-284 980.3 753 68.3
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 7.7e-284 980.3 721 70.0
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 6.5e-283 977.2 724 68.1
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 2.7e-281 971.8 804 63.9
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 1.0e-280 969.9 725 69.0
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 3.0e-280 968.4 730 67.3
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 5.7e-279 964.1 716 69.4
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 5.7e-279 964.1 720 69.9
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 7.5e-279 963.8 700 70.3
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 7.5e-279 963.8 712 68.5
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 9.1e-277 956.8 727 67.7
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 1.6e-276 956.1 701 69.0
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 2.9e-275 951.8 728 68.1
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 5.0e-275 951.0 724 67.7
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 8.5e-275 950.3 694 70.0
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 1.2e-273 946.4 730 66.2
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 3.6e-273 944.9 724 68.0
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 4.7e-273 944.5 700 69.0
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 2.3e-272 942.2 729 65.6
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 8.8e-272 940.3 729 66.9
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 2.0e-271 939.1 721 66.7
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.6e-271 938.7 729 65.3
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 2.6e-271 938.7 733 66.0
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 7.5e-271 937.2 729 65.7
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 9.8e-271 936.8 704 68.2
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 4.9e-270 934.5 728 66.8
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 9.2e-269 930.2 734 65.1
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 9.2e-269 930.2 715 68.0
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 2.0e-268 929.1 727 66.3
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 7.7e-268 927.2 703 68.8
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 1.5e-266 922.9 728 65.4
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.6e-265 919.5 681 70.0
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 1.4e-264 916.4 731 64.8
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 5.2e-264 914.4 719 66.9
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 5.2e-264 914.4 696 67.1
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 5.2e-264 914.4 755 64.0
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.5e-263 912.9 734 64.3
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.5e-263 912.9 725 64.6
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 4.4e-263 911.4 724 64.8
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 5.7e-263 911.0 731 64.7
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 1.3e-262 909.8 731 64.6
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 5.4e-261 904.4 727 65.2
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 4.6e-260 901.4 700 65.3
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 6.6e-259 897.5 726 64.2
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 1.6e-257 892.9 698 64.6
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 2.1e-257 892.5 724 64.9
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 2.1e-257 892.5 699 64.4
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 3.6e-257 891.7 707 64.2
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 1.0e-256 890.2 706 66.4
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 1.8e-256 889.4 699 63.9
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 3.1e-256 888.6 701 64.2
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 8.9e-256 887.1 708 64.1
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 1.2e-255 886.7 725 65.0
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 2.9e-254 882.1 721 63.5
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 4.9e-254 881.3 702 64.2
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 4.9e-254 881.3 682 66.3
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 1.9e-253 879.4 706 64.7
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 4.1e-253 878.2 708 63.8
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 4.1e-253 878.2 750 62.1
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 3.5e-252 875.2 720 63.6
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 3.5e-252 875.2 722 62.5
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 7.8e-252 874.0 728 62.2
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 6.6e-251 870.9 716 62.4
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 6.6e-251 870.9 708 62.9
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 1.5e-250 869.8 708 62.9
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 7.3e-250 867.5 708 62.4
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 2.1e-249 865.9 719 62.9
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 8.9e-248 860.5 703 63.9
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 8.9e-248 860.5 703 63.7
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 2.0e-247 859.4 703 63.7
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 5.8e-247 857.8 731 62.4
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 7.5e-247 857.4 701 62.8
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 1.7e-246 856.3 678 66.4
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 2.4e-245 852.4 733 61.0
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 3.2e-245 852.0 727 61.5
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 7.1e-245 850.9 635 69.0
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 1.2e-244 850.1 732 60.1
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 6.0e-244 847.8 728 60.7
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 8.6e-243 844.0 734 61.3
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 1.5e-242 843.2 666 66.4
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.5e-242 843.2 654 67.4
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 2.1e-241 839.3 728 61.3
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 5.2e-240 834.7 696 61.6
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 2.6e-239 832.4 697 61.5
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 3.8e-238 828.6 716 60.6
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.3e-235 819.3 727 58.5
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 1.1e-234 817.0 720 61.1
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.1e-233 812.8 726 58.8
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 1.2e-231 807.0 698 60.2
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 3.4e-231 805.4 710 60.7
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 2.1e-228 796.2 605 68.9
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 5.3e-224 781.6 702 60.5
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 5.8e-223 778.1 706 60.6
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 2.4e-221 772.7 725 58.2
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 1.2e-220 770.4 632 65.7
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 3.6e-217 758.8 721 56.4
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 6.0e-212 741.5 697 56.4
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.0e-211 740.7 545 71.2
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 1.5e-210 736.9 579 66.8
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 2.2e-206 723.0 699 56.8
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 1.0e-203 714.1 616 62.2
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 2.3e-203 713.0 724 53.3
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.1e-200 702.2 565 66.0
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 1.5e-199 700.3 690 56.7
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.0e-198 697.6 561 66.7
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 3.2e-197 692.6 729 54.3
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 8.5e-190 667.9 701 52.5
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 9.1e-184 647.9 637 54.0
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 7.7e-183 644.8 575 60.5
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 9.4e-173 611.3 503 65.0
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 7.2e-165 585.1 708 46.5
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.0e-143 513.8 608 49.8
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 3.0e-142 510.0 341 75.4
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 2.4e-136 490.3 874 37.3
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 6.0e-111 406.0 433 54.7
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.3e-109 400.2 255 78.8
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.6e-108 396.7 262 76.3
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 7.9e-87 325.9 364 48.1
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 1.4e-83 315.1 478 40.8
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 7.4e-77 292.7 323 49.5
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 2.7e-55 221.1 537 33.7
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 1.3e-52 212.2 283 43.5
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.2e-50 205.7 185 60.5
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.8e-43 181.8 147 63.3
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 1.7e-41 175.3 137 66.4
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 9.5e-40 169.5 122 69.7
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 7.0e-35 153.3 322 35.1
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 1.6e-31 142.1 127 55.1
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 1.8e-30 138.7 159 49.7
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 6.8e-30 136.7 121 55.4
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 8.9e-30 136.3 364 31.6
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 2.3e-25 121.7 307 31.9
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 3.6e-23 114.4 163 41.7
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 5.2e-22 110.5 118 53.4
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 2.2e-12 78.6 85 45.9
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 2.2e-12 78.6 74 55.4
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 3.7e-12 77.8 68 57.4
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 7.1e-11 73.6 65 53.8
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.2e-11 73.2 75 48.0
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.2e-11 73.2 75 48.0
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.7e-09 68.9 37 86.5
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 1.1e-08 66.2 58 53.4
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 5.6e-08 63.9 82 46.3
MCO01G401 Micromonas commoda HOM05D004359 ORTHO05D005052 4.0e-06 57.8 292 26.0


User provided reference genes

Program Settings