Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 2.9e-145 518.5 250 100.0
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 4.3e-112 408.3 249 77.5
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.6e-109 399.1 250 76.8
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 6.0e-106 387.9 250 70.8
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 6.0e-106 387.9 248 73.8
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 3.0e-105 385.6 250 70.8
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 6.6e-105 384.4 248 69.8
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 8.6e-105 384.0 250 71.2
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 5.6e-104 381.3 250 70.0
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.3e-102 375.9 252 69.0
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 4.0e-102 375.2 248 69.8
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 8.9e-102 374.0 252 67.9
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 1.2e-101 373.6 248 68.5
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 1.5e-101 373.2 252 67.1
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 2.6e-101 372.5 248 69.4
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 4.4e-101 371.7 252 67.9
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 4.4e-101 371.7 250 68.4
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 1.7e-100 369.8 250 66.4
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 2.2e-100 369.4 250 68.0
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 6.4e-100 367.9 256 69.9
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 1.4e-99 366.7 250 67.6
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 3.2e-99 365.5 244 68.4
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 4.1e-99 365.2 251 68.5
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 5.4e-99 364.8 250 66.8
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 5.4e-99 364.8 250 68.0
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 1.2e-98 363.6 250 66.4
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 1.6e-98 363.2 250 69.2
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.6e-98 363.2 250 69.2
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 2.1e-98 362.8 250 68.8
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 4.6e-98 361.7 250 66.4
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 6.0e-98 361.3 250 66.4
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 6.0e-98 361.3 250 68.8
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 6.0e-98 361.3 250 68.0
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 7.8e-98 360.9 250 68.4
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.0e-97 360.5 250 68.8
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.3e-97 360.1 250 68.8
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 1.7e-97 359.8 252 65.9
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 2.3e-97 359.4 251 68.1
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 2.3e-97 359.4 250 68.0
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 3.9e-97 358.6 250 66.0
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 5.1e-97 358.2 251 68.5
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 6.6e-97 357.8 250 68.0
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 1.1e-96 357.1 252 66.3
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 3.3e-96 355.5 250 67.6
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 4.3e-96 355.1 250 66.4
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 5.6e-96 354.8 251 64.5
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 5.6e-96 354.8 250 67.6
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 9.5e-96 354.0 252 66.7
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.6e-95 353.2 250 67.2
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 2.1e-95 352.8 252 65.5
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 2.1e-95 352.8 251 65.3
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 2.8e-95 352.4 250 67.2
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 2.8e-95 352.4 245 66.9
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 3.6e-95 352.1 250 66.8
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 8.1e-95 350.9 244 68.9
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 8.1e-95 350.9 251 67.7
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 1.1e-94 350.5 251 67.3
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 1.4e-94 350.1 250 66.0
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.3e-94 349.4 250 65.2
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 3.1e-94 349.0 250 66.8
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 3.1e-94 349.0 250 66.0
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 4.0e-94 348.6 250 66.0
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 4.0e-94 348.6 250 66.0
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 5.2e-94 348.2 250 65.2
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 5.2e-94 348.2 252 64.3
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 6.8e-94 347.8 250 65.2
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 6.8e-94 347.8 250 65.2
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 8.9e-94 347.4 250 65.6
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 8.9e-94 347.4 250 65.2
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 2.0e-93 346.3 250 65.6
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 3.4e-93 345.5 249 64.3
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 3.4e-93 345.5 252 63.9
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 3.4e-93 345.5 250 64.0
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 4.4e-93 345.1 250 65.2
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 4.4e-93 345.1 250 65.2
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 5.8e-93 344.7 243 65.4
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 5.8e-93 344.7 243 65.8
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 5.8e-93 344.7 249 63.9
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 7.6e-93 344.4 251 64.1
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 9.9e-93 344.0 250 64.8
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 9.9e-93 344.0 250 63.6
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 1.3e-92 343.6 252 64.7
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 1.3e-92 343.6 252 64.3
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 2.2e-92 342.8 254 65.0
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 2.2e-92 342.8 243 66.7
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 2.9e-92 342.4 250 64.8
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 2.9e-92 342.4 252 63.9
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 3.8e-92 342.0 255 64.7
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 3.8e-92 342.0 250 62.4
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 6.4e-92 341.3 250 63.6
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 8.4e-92 340.9 250 65.2
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 1.4e-91 340.1 250 65.2
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.4e-91 340.1 243 66.3
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.9e-91 339.7 250 64.8
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 2.4e-91 339.3 250 63.2
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 7.1e-91 337.8 250 63.6
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 9.2e-91 337.4 250 64.4
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 2.1e-90 336.3 241 64.3
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 2.1e-90 336.3 252 62.7
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 7.8e-90 334.3 245 64.1
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 7.8e-90 334.3 241 64.3
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 7.8e-90 334.3 253 63.6
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 1.3e-89 333.6 241 64.3
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 5.1e-89 331.6 250 62.0
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 1.1e-88 330.5 253 61.7
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 1.5e-88 330.1 253 62.5
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 9.6e-88 327.4 292 57.5
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 4.7e-87 325.1 243 64.2
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 4.7e-87 325.1 243 64.2
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 1.4e-86 323.6 274 58.8
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 1.4e-86 323.6 274 58.8
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 2.4e-86 322.8 243 63.4
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 5.2e-86 321.6 250 62.0
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 6.9e-86 321.2 241 63.9
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 1.3e-84 317.0 246 62.2
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 2.2e-84 316.2 225 64.9
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 1.6e-82 310.1 184 78.3
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.0e-81 307.4 291 54.0
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 1.0e-81 307.4 250 61.2
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.7e-81 306.6 250 60.0
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 6.6e-81 304.7 244 60.2
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 1.3e-79 300.4 240 60.4
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 3.6e-79 298.9 249 58.6
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 1.4e-78 297.0 174 80.5
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 9.0e-78 294.3 258 58.5
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 3.2e-75 285.8 200 66.5
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 1.6e-74 283.5 250 56.8
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 2.1e-74 283.1 243 57.6
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 9.6e-72 274.2 251 55.8
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 3.6e-71 272.3 175 72.0
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 6.0e-66 255.0 186 65.1
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 1.0e-65 254.2 234 51.7
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.1e-64 250.8 147 78.9
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.1e-64 250.8 147 78.9
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.9e-64 250.0 153 75.2
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.0e-61 240.0 181 64.6
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 3.4e-53 212.6 180 56.7
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 7.2e-51 204.9 193 55.4
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 6.1e-50 201.8 175 59.4
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 5.9e-45 185.3 193 53.9
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 5.9e-45 185.3 193 53.9
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 6.7e-41 171.8 157 49.7
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 9.7e-40 167.9 109 70.6
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 1.5e-37 160.6 140 55.0
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.1e-34 150.2 88 76.1
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 3.5e-29 132.9 73 86.3
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 5.2e-25 119.0 66 77.3
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 2.6e-24 116.7 174 36.8
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 4.4e-24 115.9 73 75.3
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 1.0e-20 104.8 104 51.0
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 1.0e-20 104.8 104 51.0
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 8.5e-20 101.7 75 69.3
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 1.9e-19 100.5 168 35.1
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 3.6e-18 96.3 108 50.9
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 8.6e-12 75.1 83 53.0
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 8.6e-12 75.1 94 46.8
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 3.0e-09 66.6 52 53.8
PRCOL_00001474 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 2.0e-08 63.9 199 27.6
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.3e-07 61.2 45 57.8
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 2.2e-07 60.5 54 55.6
BcaC05g26219 Brassica carinata HOM05D004292 ORTHO05D005206 2.4e-06 57.0 34 70.6
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 2.4e-06 57.0 203 27.1
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 9.2e-06 55.1 52 51.9


User provided reference genes

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