Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G2733 Salvia bowleyana HOM05D005842 ORTHO05D007077 3.9e-28 127.9 88 100.0
Migut.H00813 Erythranthe guttata HOM05D005842 ORTHO05D007077 1.4e-14 82.8 85 50.6
Migut.N00324 Erythranthe guttata HOM05D005842 ORTHO05D007077 3.2e-14 81.6 85 51.8
Nitab4.5_0001769g0190 Nicotiana tabacum HOM05D005842 ORTHO05D007077 4.2e-14 81.3 86 50.0
Sopen05g031940 Solanum pennellii HOM05D005842 ORTHO05D007077 2.1e-13 79.0 89 69.7
PGSC0003DMG400027164 Solanum tuberosum HOM05D005842 ORTHO05D007077 2.7e-13 78.6 89 49.4
Hma1.2p1_0112F.1_g055010 Hydrangea macrophylla HOM05D005842 ORTHO05D007077 1.4e-12 76.3 87 49.4
Solyc05g053450.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 3.9e-12 74.7 89 65.2
Atru.chr4.1869 Acer truncatum HOM05D005842 ORTHO05D007077 6.7e-12 73.9 85 58.8
CAN.G305.25 Capsicum annuum HOM05D005842 ORTHO05D007077 8.8e-12 73.6 88 47.7
Atru.chr4.1859_Atru.chr4.1858 Acer truncatum HOM05D005842 ORTHO05D007077 1.1e-11 73.2 85 58.8
Atru.chr4.1868 Acer truncatum HOM05D005842 ORTHO05D007077 1.1e-11 73.2 85 58.8
PSO832G1240 Papaver somniferum HOM05D005842 ORTHO05D007077 1.5e-11 72.8 83 47.0
Actinidia39941 Actinidia chinensis HOM05D005842 ORTHO05D007077 2.0e-11 72.4 87 51.7
Nitab4.5_0000867g0010 Nicotiana tabacum HOM05D000404 ORTHO05D001765 2.5e-11 72.0 88 61.4
Sopen09g034020 Solanum pennellii HOM05D005842 ORTHO05D007077 2.5e-11 72.0 89 48.3
Actinidia11383 Actinidia chinensis HOM05D005842 ORTHO05D007077 3.3e-11 71.6 87 50.6
CSS0006411 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 3.3e-11 71.6 87 51.7
PSO210G3477 Papaver somniferum HOM05D005842 ORTHO05D007077 7.4e-11 70.5 83 67.5
PSO210G4408 Papaver somniferum HOM05D005842 ORTHO05D007077 7.4e-11 70.5 83 67.5
Dinv27137 Davidia involucrata HOM05D005842 ORTHO05D007077 9.7e-11 70.1 89 48.3
Dinv29780 Davidia involucrata HOM05D005842 ORTHO05D007077 1.7e-10 69.3 96 49.0
SHI18628 Sapria himalayana HOM05D005842 ORTHO05D007077 2.2e-10 68.9 82 42.7
Solyc09g091040.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 2.8e-10 68.6 89 46.1
CSS0017402 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 3.7e-10 68.2 88 47.7
PSO764G0017 Papaver somniferum HOM05D005842 ORTHO05D007077 3.7e-10 68.2 83 66.3
Lj6g0013781 Lotus japonicus HOM05D005842 ORTHO05D007077 4.8e-10 67.8 78 44.9
MD13G1226500 Malus domestica HOM05D005842 ORTHO05D007077 4.8e-10 67.8 86 40.7
MD16G1231600 Malus domestica HOM05D005842 ORTHO05D007077 4.8e-10 67.8 86 40.7
A07p08140 Brassica napus HOM05D005842 ORTHO05D007077 6.3e-10 67.4 88 63.6
C07p12280 Brassica napus HOM05D005842 ORTHO05D007077 6.3e-10 67.4 88 63.6
BolC7t41695H Brassica oleracea HOM05D005842 ORTHO05D007077 6.3e-10 67.4 88 63.6
BraA07t28597Z Brassica rapa HOM05D005842 ORTHO05D007077 6.3e-10 67.4 88 63.6
Glyma.20G081400 Glycine max HOM05D005842 ORTHO05D007077 6.3e-10 67.4 78 47.4
PGSC0003DMG404001548 Solanum tuberosum HOM05D005842 ORTHO05D007077 6.3e-10 67.4 89 47.2
Actinidia25095 Actinidia chinensis HOM05D005842 ORTHO05D007077 8.2e-10 67.0 87 47.1
Dinv29781 Davidia involucrata HOM05D005842 ORTHO05D007077 1.1e-09 66.6 103 45.6
TAR633G2520 Trochodendron aralioides HOM05D005842 ORTHO05D007077 1.4e-09 66.2 80 45.0
Cc03_g06880 Coffea canephora HOM05D005842 ORTHO05D007077 1.8e-09 65.9 83 44.6
Cc03_g06890 Coffea canephora HOM05D005842 ORTHO05D007077 1.8e-09 65.9 83 44.6
Cc03_g06900 Coffea canephora HOM05D005842 ORTHO05D007077 1.8e-09 65.9 83 44.6
Cc03_g06910 Coffea canephora HOM05D005842 ORTHO05D007077 1.8e-09 65.9 83 44.6
Cc03_g06920 Coffea canephora HOM05D005842 ORTHO05D007077 1.8e-09 65.9 83 44.6
Cc03_g06930 Coffea canephora HOM05D005842 ORTHO05D007077 1.8e-09 65.9 83 44.6
Cc03_g06940 Coffea canephora HOM05D005842 ORTHO05D007077 1.8e-09 65.9 83 44.6
Cc03_g06950 Coffea canephora HOM05D005842 ORTHO05D007077 1.8e-09 65.9 83 44.6
Glyma.10G130600 Glycine max HOM05D005842 ORTHO05D007077 1.8e-09 65.9 78 46.2
Peaxi162Scf00164g00112 Petunia axillaris HOM05D005842 ORTHO05D007077 1.8e-09 65.9 73 46.6
PSO266G0009 Papaver somniferum HOM05D005842 ORTHO05D007077 2.4e-09 65.5 83 63.9
PSO266G0028 Papaver somniferum HOM05D005842 ORTHO05D007077 2.4e-09 65.5 83 63.9
PSO384G4311 Papaver somniferum HOM05D005842 ORTHO05D007077 4.1e-09 64.7 83 61.4
PSO384G5008 Papaver somniferum HOM05D005842 ORTHO05D007077 1.2e-08 63.2 83 62.7
THA.LOC104821628 Tarenaya hassleriana HOM05D005842 ORTHO05D007077 1.2e-08 63.2 86 40.7
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 1.5e-08 62.8 89 40.4
Ca_26210_v3 Cicer arietinum L. HOM05D005842 ORTHO05D007077 2.0e-08 62.4 78 42.3
Peaxi162Scf00125g01021 Petunia axillaris HOM05D005842 ORTHO05D007077 2.0e-08 62.4 88 63.6
Sabra10G0043900 Salix brachista HOM05D005842 ORTHO05D007077 2.0e-08 62.4 89 41.6
Oeu007544.1 Olea europaea HOM05D005842 ORTHO05D007077 3.4e-08 61.6 65 52.3
Prupe.1G053900 Prunus persica HOM05D005842 ORTHO05D007077 3.4e-08 61.6 86 38.4
ClCG05G003830 Citrullus lanatus HOM05D005842 ORTHO05D007077 4.5e-08 61.2 73 41.1
Cc00_g17210 Coffea canephora HOM05D005842 ORTHO05D007077 4.5e-08 61.2 83 44.6
BcaB03g16079 Brassica carinata HOM05D005842 ORTHO05D007077 5.9e-08 60.8 105 52.4
BcaC02g09413 Brassica carinata HOM05D005842 ORTHO05D007077 5.9e-08 60.8 105 52.4
BcaC02g09414 Brassica carinata HOM05D005842 ORTHO05D007077 5.9e-08 60.8 105 52.4
BcaC02g09415 Brassica carinata HOM05D005842 ORTHO05D007077 5.9e-08 60.8 105 52.4
Potri.010G062800 Populus trichocarpa HOM05D005842 ORTHO05D007077 7.7e-08 60.5 89 39.3
SpUn0225_0010 Schrenkiella parvula HOM05D005842 ORTHO05D007077 1.0e-07 60.1 105 51.4
BcaB06g26603 Brassica carinata HOM05D005842 ORTHO05D007077 1.3e-07 59.7 74 55.4
A04p08620 Brassica napus HOM05D005842 ORTHO05D007077 2.2e-07 58.9 106 52.8
BraA04t16556Z Brassica rapa HOM05D005842 ORTHO05D007077 2.2e-07 58.9 106 52.8
TWI09G0179 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 2.2e-07 58.9 84 36.9
ATR0787G056 Amborella trichopoda HOM05D005842 ORTHO05D007077 2.9e-07 58.5 82 56.1
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 2.9e-07 58.5 74 54.1
Nn1g03042 Nelumbo nucifera HOM05D005842 ORTHO05D007077 3.8e-07 58.2 80 56.2
Peaxi162Scf01007g00004 Petunia axillaris HOM05D005842 ORTHO05D007077 5.0e-07 57.8 87 60.9
Lalb_Chr01g0011321 Lupinus albus HOM05D005842 ORTHO05D007077 8.5e-07 57.0 73 46.6
Nn1g03041 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.1e-06 56.6 80 47.5
Atru.chr13.2235 Acer truncatum HOM05D005842 ORTHO05D007077 1.9e-06 55.8 38 68.4
Nn1g03039 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.9e-06 55.8 80 53.8
CARHR219200 Cardamine hirsuta HOM05D005842 ORTHO05D007077 2.5e-06 55.5 104 51.0
arahy.Tifrunner.gnm1.ann1.LRUD7W Arachis hypogaea HOM05D005842 ORTHO05D007077 3.2e-06 55.1 79 44.3
arahy.Tifrunner.gnm1.ann1.Q9KDDQ Arachis hypogaea HOM05D005842 ORTHO05D007077 3.2e-06 55.1 79 44.3
Nn1g03040 Nelumbo nucifera HOM05D005842 ORTHO05D007077 3.2e-06 55.1 80 38.8
Thhalv10026478m.g Eutrema salsugineum HOM05D005842 ORTHO05D007077 7.2e-06 53.9 105 47.6
AL7G43170 Arabidopsis lyrata HOM05D005842 ORTHO05D007077 9.4e-06 53.5 104 50.0
Sed0010218 Sechium edule HOM05D005842 ORTHO05D007077 9.4e-06 53.5 82 54.9


User provided reference genes

Program Settings