Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 8.2e-268 926.4 441 100.0
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 5.0e-241 837.4 445 87.4
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 2.7e-234 815.1 445 84.3
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 6.6e-225 783.9 441 83.4
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 4.3e-224 781.2 431 83.1
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 2.1e-223 778.9 441 81.6
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 1.2e-221 773.1 431 81.7
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 2.0e-221 772.3 438 80.1
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 2.6e-221 771.9 431 81.4
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 5.8e-221 770.8 431 81.4
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 7.5e-221 770.4 429 82.5
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 1.3e-220 769.6 431 81.4
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.9e-220 768.5 440 80.5
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 1.0e-217 760.0 435 80.9
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 3.9e-217 758.1 512 72.1
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 6.6e-217 757.3 438 79.9
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 1.1e-214 750.0 445 80.2
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 8.9e-214 746.9 443 79.7
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 5.4e-211 737.6 436 77.8
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 4.6e-210 734.6 437 78.0
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 7.8e-210 733.8 444 77.7
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 8.6e-209 730.3 441 78.2
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 5.6e-208 727.6 431 77.3
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 2.8e-207 725.3 436 75.5
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 3.6e-207 724.9 446 77.6
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 3.1e-206 721.8 430 78.1
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 2.6e-205 718.8 433 76.9
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 9.9e-205 716.8 439 75.9
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 3.8e-204 714.9 436 75.2
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 1.1e-203 713.4 435 76.6
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 9.2e-203 710.3 441 76.4
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 2.1e-202 709.1 440 75.7
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 6.0e-202 707.6 430 78.6
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 1.0e-201 706.8 444 75.9
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 1.3e-201 706.4 436 75.7
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 2.3e-201 705.7 431 75.6
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 5.1e-201 704.5 439 74.7
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 2.5e-200 702.2 439 74.3
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 3.3e-200 701.8 435 74.3
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 4.3e-200 701.4 447 74.5
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 5.6e-200 701.0 393 79.9
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 1.2e-199 699.9 439 73.1
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 1.6e-199 699.5 457 72.9
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 3.6e-199 698.4 439 74.3
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 3.6e-199 698.4 454 73.3
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 6.2e-199 697.6 439 74.5
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 8.1e-199 697.2 437 73.0
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 1.4e-198 696.4 438 74.0
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 1.8e-198 696.0 444 73.6
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 4.0e-198 694.9 431 74.5
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 5.3e-198 694.5 426 75.4
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 6.9e-198 694.1 439 73.6
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 9.0e-198 693.7 436 75.7
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 1.2e-197 693.3 449 72.8
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 1.5e-197 693.0 434 73.5
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 1.5e-197 693.0 437 73.7
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 1.5e-197 693.0 440 73.2
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 1.5e-197 693.0 448 73.4
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 1.5e-197 693.0 435 72.9
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 3.4e-197 691.8 447 74.7
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 4.4e-197 691.4 439 73.1
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 4.4e-197 691.4 441 73.9
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 5.8e-197 691.0 441 73.2
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 5.8e-197 691.0 439 73.3
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 9.9e-197 690.3 453 72.0
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 1.7e-196 689.5 439 73.1
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.7e-196 689.5 454 72.2
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 2.2e-196 689.1 439 72.7
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 2.2e-196 689.1 443 73.6
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 2.2e-196 689.1 446 72.4
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 6.4e-196 687.6 438 72.8
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 8.4e-196 687.2 443 73.6
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 8.4e-196 687.2 453 71.5
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 8.4e-196 687.2 435 74.5
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 1.1e-195 686.8 438 74.0
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 1.9e-195 686.0 437 71.9
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 1.9e-195 686.0 457 71.6
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.9e-195 686.0 454 71.8
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 2.4e-195 685.6 441 72.8
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 2.4e-195 685.6 439 72.9
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 3.2e-195 685.3 440 72.7
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 3.2e-195 685.3 440 72.7
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 4.2e-195 684.9 452 71.9
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 4.2e-195 684.9 452 72.1
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 5.4e-195 684.5 440 72.7
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.2e-194 683.3 455 70.8
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 1.2e-194 683.3 445 74.4
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 2.1e-194 682.6 440 72.3
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 2.1e-194 682.6 440 71.8
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 2.7e-194 682.2 442 72.6
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 2.7e-194 682.2 443 73.8
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 3.5e-194 681.8 443 73.1
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 6.0e-194 681.0 447 71.1
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 1.0e-193 680.2 439 72.2
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.0e-193 680.2 446 71.7
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 1.3e-193 679.9 443 72.9
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 3.9e-193 678.3 441 73.2
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 6.6e-193 677.6 444 72.1
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 1.1e-192 676.8 451 71.6
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 2.5e-192 675.6 426 73.2
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 3.3e-192 675.2 427 74.5
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 3.3e-192 675.2 441 71.7
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 7.3e-192 674.1 436 73.2
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 1.6e-191 672.9 439 71.5
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 6.2e-191 671.0 441 70.7
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 2.4e-190 669.1 432 72.2
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 9.0e-190 667.2 433 70.2
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 2.0e-189 666.0 449 70.6
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 2.0e-189 666.0 432 72.2
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 1.3e-188 663.3 479 66.8
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 1.7e-188 662.9 366 81.1
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 1.7e-188 662.9 437 71.2
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 8.4e-188 660.6 366 80.9
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 4.5e-181 638.3 382 75.9
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 7.9e-178 627.5 445 68.1
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 9.6e-176 620.5 430 67.2
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 6.2e-175 617.8 455 65.3
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 5.8e-173 611.3 349 79.9
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 7.1e-171 604.4 322 83.5
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 7.9e-170 600.9 326 82.2
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 6.5e-164 581.3 408 67.9
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 4.6e-162 575.1 371 70.1
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 1.3e-159 567.0 342 79.2
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.6e-154 550.1 289 84.1
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 3.6e-154 548.9 291 82.5
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 4.7e-154 548.5 289 84.1
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.3e-153 546.2 393 68.4
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 3.9e-145 518.8 286 79.4
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 4.4e-144 515.4 334 67.1
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 1.1e-142 510.8 270 84.4
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 3.4e-128 462.6 297 73.4
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 7.5e-128 461.5 302 73.5
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 2.3e-124 449.9 336 57.7
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 4.2e-123 445.7 285 68.8
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.1e-118 431.0 313 67.4
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 5.4e-110 402.1 336 52.1
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.6e-98 364.0 318 53.8
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.5e-91 340.9 332 48.5
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 8.1e-90 335.1 273 63.0
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 1.6e-66 257.7 179 68.2
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 1.1e-65 255.0 139 79.9
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 1.4e-54 218.0 119 82.4
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 2.1e-53 214.2 124 77.4
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 1.3e-52 211.5 109 82.6
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 2.4e-49 200.7 137 65.7
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 9.0e-49 198.7 127 72.4
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.0e-32 144.4 85 75.3
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 5.9e-32 142.9 85 74.1
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 2.1e-29 134.4 80 75.0
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 2.8e-26 124.0 101 60.4
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 1.0e-20 105.5 110 50.0
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 1.9e-14 84.7 52 75.0
QL11p016407 Quercus lobata HOM05D004680 ORTHO05D039099 1.9e-06 58.2 129 36.4


User provided reference genes

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