Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 2.4e-176 622.1 314 100.0
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 9.1e-112 407.5 313 65.8
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 4.6e-95 352.1 313 61.0
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.6e-87 327.0 304 57.2
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.3e-86 323.2 256 63.7
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 3.9e-86 322.4 322 53.7
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.9e-86 322.4 262 62.6
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.5e-85 320.5 322 54.7
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 2.5e-85 319.7 321 52.6
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 3.3e-85 319.3 270 60.4
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 3.3e-85 319.3 256 61.3
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 5.6e-85 318.5 242 65.7
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.2e-84 317.4 284 59.9
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 2.8e-84 316.2 256 60.5
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 3.6e-84 315.8 279 57.0
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 3.6e-84 315.8 243 64.6
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.8e-83 313.5 260 62.7
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 2.3e-83 313.2 253 63.2
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 2.3e-83 313.2 253 63.2
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 6.8e-83 311.6 247 61.1
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 8.9e-83 311.2 324 51.5
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 1.5e-82 310.5 320 51.9
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.5e-82 310.5 255 60.4
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 2.0e-82 310.1 254 61.4
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 3.4e-82 309.3 329 51.1
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 5.8e-82 308.5 247 61.1
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 9.8e-82 307.8 320 50.9
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 1.3e-81 307.4 300 53.0
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.3e-81 307.4 276 57.6
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 2.9e-81 306.2 255 60.0
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 2.9e-81 306.2 320 50.3
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 4.9e-81 305.4 245 60.4
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.1e-80 304.3 245 62.0
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 1.1e-80 304.3 334 51.5
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.4e-80 303.9 284 56.7
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 1.4e-80 303.9 256 58.6
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 5.4e-80 302.0 259 57.9
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 2.1e-79 300.1 253 59.7
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 2.7e-79 299.7 320 50.3
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 3.5e-79 299.3 293 56.3
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 4.6e-79 298.9 263 57.4
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.0e-78 297.7 302 52.3
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 1.0e-78 297.7 326 49.4
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 1.3e-78 297.4 258 57.8
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 2.3e-78 296.6 255 59.2
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 3.0e-78 296.2 316 49.7
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 3.9e-78 295.8 247 58.3
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 5.1e-78 295.4 245 60.4
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 6.6e-78 295.0 258 57.4
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 6.6e-78 295.0 283 53.7
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 8.6e-78 294.7 293 56.0
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 1.5e-77 293.9 261 58.6
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 1.9e-77 293.5 304 52.0
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 1.9e-77 293.5 247 58.7
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 1.9e-77 293.5 255 58.4
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.5e-77 293.1 254 56.7
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.5e-77 293.1 245 60.0
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 5.6e-77 292.0 247 58.3
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 9.5e-77 291.2 286 55.9
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 9.5e-77 291.2 320 50.6
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 1.6e-76 290.4 254 56.7
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.6e-76 290.4 247 57.5
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 1.6e-76 290.4 254 56.7
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.8e-76 289.7 254 56.3
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 1.1e-75 287.7 287 52.3
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 1.4e-75 287.3 258 58.9
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 1.4e-75 287.3 258 58.9
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 4.0e-75 285.8 319 51.7
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 5.2e-75 285.4 263 53.2
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 5.2e-75 285.4 259 54.4
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 6.8e-75 285.0 321 48.9
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 6.8e-75 285.0 253 54.2
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 6.8e-75 285.0 253 54.2
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 6.8e-75 285.0 258 57.4
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 6.8e-75 285.0 253 54.9
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 1.5e-74 283.9 258 54.3
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 1.5e-74 283.9 253 54.2
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 2.6e-74 283.1 315 49.2
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 3.4e-74 282.7 304 52.6
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 4.4e-74 282.3 254 54.3
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 9.9e-74 281.2 253 53.8
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 1.3e-73 280.8 253 54.2
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.3e-73 280.8 310 50.6
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 1.7e-73 280.4 254 56.3
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 2.2e-73 280.0 288 51.7
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 3.7e-73 279.3 321 48.3
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 3.7e-73 279.3 253 55.3
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 8.4e-73 278.1 259 53.7
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 8.4e-73 278.1 294 50.3
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 1.9e-72 276.9 321 49.5
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.9e-72 276.9 321 48.3
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.9e-72 276.9 321 48.3
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 3.2e-72 276.2 317 48.3
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 3.2e-72 276.2 247 56.3
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 5.4e-72 275.4 279 52.7
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 9.2e-72 274.6 280 51.8
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 9.2e-72 274.6 247 55.5
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 1.6e-71 273.9 252 54.4
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 2.1e-71 273.5 268 54.1
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 3.5e-71 272.7 300 47.3
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 6.0e-71 271.9 300 48.3
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 2.3e-70 270.0 297 50.2
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 2.3e-70 270.0 257 54.1
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 3.0e-70 269.6 278 51.8
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.1e-69 267.7 289 50.2
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 2.5e-69 266.5 304 46.4
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 7.3e-69 265.0 256 53.5
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 9.6e-69 264.6 281 50.5
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.6e-68 263.8 285 48.4
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.1e-68 263.5 285 48.8
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 2.8e-68 263.1 285 48.4
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.8e-68 263.1 253 52.2
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 3.6e-68 262.7 277 50.5
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 4.7e-68 262.3 297 48.1
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 6.2e-68 261.9 287 48.8
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 6.2e-68 261.9 277 49.5
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 8.1e-68 261.5 288 49.7
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 8.1e-68 261.5 247 53.0
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.1e-67 261.2 264 50.4
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 1.8e-67 260.4 251 53.4
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.1e-67 259.6 264 50.4
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 4.0e-67 259.2 273 51.6
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 4.0e-67 259.2 267 49.4
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 6.8e-67 258.5 262 53.1
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 8.9e-67 258.1 288 49.3
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 8.9e-67 258.1 289 50.5
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 9.9e-66 254.6 244 56.1
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 1.3e-65 254.2 273 49.5
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 2.9e-65 253.1 283 47.7
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 6.4e-65 251.9 306 45.8
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 6.4e-65 251.9 281 49.1
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 6.4e-65 251.9 258 52.3
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 8.4e-65 251.5 283 47.7
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 1.1e-64 251.1 262 51.9
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 1.9e-64 250.4 254 51.2
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.9e-64 250.4 289 49.1
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 2.4e-64 250.0 322 45.3
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 2.4e-64 250.0 252 51.2
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 2.4e-64 250.0 243 50.2
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 2.4e-64 250.0 260 51.5
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 2.4e-64 250.0 284 49.3
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 2.7e-63 246.5 244 53.3
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 3.0e-62 243.0 283 46.6
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 2.5e-61 240.0 295 43.4
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 3.3e-61 239.6 248 51.6
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 7.3e-61 238.4 249 50.6
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.3e-60 237.7 262 48.1
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 8.1e-60 235.0 317 42.6
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 1.8e-59 233.8 242 49.2
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 4.4e-58 229.2 337 43.9
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 4.2e-56 222.6 260 47.7
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 1.0e-54 218.0 153 64.7
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 8.1e-52 208.4 220 51.4
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 4.0e-51 206.1 152 61.2
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 1.7e-49 200.7 212 49.1
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 4.9e-49 199.1 153 63.4
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 3.0e-46 189.9 180 51.7
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 2.0e-42 177.2 168 50.6
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 4.5e-42 176.0 226 46.0
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 3.5e-39 166.4 163 50.9
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 7.9e-39 165.2 123 67.5
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 4.3e-37 159.5 133 54.9
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 2.5e-32 143.7 256 35.9
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.7e-31 140.2 244 35.7
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 4.3e-29 132.9 281 35.9
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 2.9e-25 120.2 114 58.8
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 8.5e-25 118.6 162 43.2
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 9.4e-24 115.2 91 61.5
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 1.1e-21 108.2 81 59.3
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 1.1e-21 108.2 83 66.3
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.3e-19 99.4 73 64.4
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 3.4e-18 96.7 73 65.8
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 8.5e-17 92.0 73 56.2
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 2.3e-14 84.0 134 35.8
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 4.5e-10 69.7 58 56.9
Ciclev10027336m.g Citrus clementina HOM05D003303 ORTHO05D003887 8.8e-06 55.5 59 50.8


User provided reference genes

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