Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 5.0e-157 557.8 289 100.0
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 2.3e-125 452.6 287 80.5
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 2.9e-120 435.6 282 79.4
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 4.9e-120 434.9 287 77.7
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 1.7e-117 426.4 288 79.2
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 1.9e-116 422.9 287 75.6
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 4.8e-115 418.3 287 74.9
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 1.1e-114 417.2 289 73.0
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 6.9e-114 414.5 287 73.5
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 9.0e-114 414.1 287 73.9
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 9.0e-114 414.1 287 73.9
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 2.6e-113 412.5 287 72.5
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 5.8e-113 411.4 285 70.9
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 4.9e-112 408.3 288 74.3
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 3.2e-111 405.6 283 71.4
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 4.2e-111 405.2 284 73.2
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 5.4e-111 404.8 283 71.0
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 2.7e-110 402.5 285 71.9
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 5.1e-109 398.3 289 71.6
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 5.6e-108 394.8 287 69.0
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 5.6e-108 394.8 283 70.7
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 7.4e-108 394.4 286 70.3
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 1.6e-107 393.3 282 67.7
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 2.1e-107 392.9 283 68.6
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 2.8e-107 392.5 289 67.8
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 8.1e-107 391.0 286 69.6
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 8.1e-107 391.0 283 71.0
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 3.1e-106 389.0 283 68.9
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 4.0e-106 388.7 283 68.9
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 1.5e-105 386.7 283 67.5
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 2.6e-105 386.0 283 67.8
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 7.6e-105 384.4 288 69.1
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 1.3e-104 383.6 283 66.8
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 2.2e-104 382.9 289 68.5
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 2.9e-104 382.5 283 68.2
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 6.4e-104 381.3 282 67.0
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 8.4e-104 380.9 291 67.4
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 8.4e-104 380.9 283 68.2
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 3.2e-103 379.0 283 66.8
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 9.3e-103 377.5 283 67.5
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 9.3e-103 377.5 297 66.0
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.2e-102 377.1 296 66.6
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 1.2e-102 377.1 283 67.5
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 1.2e-102 377.1 283 65.7
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 1.6e-102 376.7 278 67.3
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 2.1e-102 376.3 283 67.8
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 2.1e-102 376.3 287 69.0
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 3.5e-102 375.6 283 68.2
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 6.0e-102 374.8 283 66.1
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 7.9e-102 374.4 283 66.8
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 1.0e-101 374.0 284 66.5
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 3.0e-101 372.5 256 72.7
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 3.0e-101 372.5 283 65.7
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 3.9e-101 372.1 284 66.2
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 3.9e-101 372.1 271 70.1
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 5.1e-101 371.7 271 70.1
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 8.7e-101 370.9 283 65.4
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 8.7e-101 370.9 284 66.2
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 2.5e-100 369.4 293 65.2
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 5.6e-100 368.2 282 64.9
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 1.3e-99 367.1 283 65.0
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 1.6e-99 366.7 283 65.7
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 2.8e-99 365.9 287 64.5
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 3.7e-99 365.5 240 75.4
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 8.2e-99 364.4 241 73.9
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 1.1e-98 364.0 283 66.1
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.1e-98 364.0 277 66.1
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 1.1e-98 364.0 229 77.3
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.8e-98 363.2 277 66.1
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 3.1e-98 362.5 283 63.3
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 4.0e-98 362.1 283 64.7
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 4.0e-98 362.1 279 65.9
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.5e-97 360.1 288 66.3
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 1.5e-97 360.1 279 66.3
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 1.5e-97 360.1 279 66.3
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 1.5e-97 360.1 279 66.3
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 1.5e-97 360.1 286 65.0
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 2.0e-97 359.8 282 66.0
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 3.4e-97 359.0 279 65.9
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 4.9e-96 355.1 265 66.4
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 4.9e-96 355.1 286 65.0
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 8.4e-96 354.4 279 65.2
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 8.4e-96 354.4 230 75.7
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 1.9e-95 353.2 279 64.9
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 5.5e-95 351.7 310 60.0
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 5.5e-95 351.7 279 65.6
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 5.5e-95 351.7 279 65.6
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 5.5e-95 351.7 279 65.6
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 7.1e-95 351.3 280 64.6
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 9.3e-95 350.9 280 64.3
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 1.2e-94 350.5 256 69.5
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 1.6e-94 350.1 280 63.6
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 3.5e-94 349.0 280 65.4
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 3.5e-94 349.0 290 63.1
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 4.6e-94 348.6 279 65.2
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 7.9e-94 347.8 278 65.5
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 7.9e-94 347.8 279 64.5
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 4.3e-92 342.0 230 73.0
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 5.7e-92 341.7 288 63.2
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 1.3e-91 340.5 289 62.3
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 3.7e-91 339.0 216 75.5
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 6.3e-91 338.2 283 63.3
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 6.3e-91 338.2 229 74.7
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 2.4e-90 336.3 245 68.2
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 5.3e-90 335.1 277 64.3
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 5.3e-90 335.1 229 74.2
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 4.5e-89 332.0 290 60.3
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 1.0e-88 330.9 276 62.7
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 2.2e-88 329.7 283 60.8
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 9.4e-87 324.3 230 70.0
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 3.0e-85 319.3 274 62.0
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 8.8e-85 317.8 237 66.2
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 2.0e-84 316.6 252 64.3
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 1.1e-82 310.8 287 57.8
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 7.7e-81 304.7 297 56.6
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 3.8e-80 302.4 235 64.7
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 3.8e-80 302.4 212 71.7
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 2.5e-79 299.7 228 64.5
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 2.4e-74 283.1 292 48.3
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 4.5e-73 278.9 237 59.5
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 3.9e-69 265.8 272 56.6
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 4.4e-68 262.3 261 52.9
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 1.0e-64 251.1 289 47.1
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.1e-62 241.9 211 63.0
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.1e-58 229.2 197 53.3
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.3e-58 228.8 197 53.3
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.5e-57 225.7 197 52.3
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.0e-56 224.6 197 52.3
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.0e-54 214.9 212 58.0
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.0e-53 213.0 151 67.5
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.6e-52 209.9 225 54.7
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.3e-51 207.6 139 71.9
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.1e-46 190.3 197 46.7
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 6.8e-45 185.3 264 45.5
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 6.8e-45 185.3 136 66.2
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.2e-44 184.5 171 59.1
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-39 167.2 186 49.5
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 6.6e-32 142.1 182 40.1
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 7.3e-31 138.7 119 61.3
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.4e-29 134.4 206 44.7
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.8e-29 134.0 199 37.7
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.3e-27 125.2 190 46.8
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 2.4e-26 123.6 83 73.5
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 5.4e-26 122.5 193 39.4
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 1.2e-25 121.3 99 60.6
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 1.2e-25 121.3 99 60.6
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 4.6e-25 119.4 76 73.7
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 7.1e-18 95.5 59 76.3
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 4.6e-17 92.8 58 74.1
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.0e-16 91.7 57 73.7
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.9e-16 89.7 58 72.4
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 7.3e-15 85.5 91 47.3
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 4.7e-14 82.8 64 65.6
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 1.5e-12 77.8 51 66.7
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.2e-11 73.9 46 71.7
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 3.0e-08 63.5 90 38.9
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 5.1e-08 62.8 60 55.0
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 5.1e-08 62.8 60 55.0
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 3.3e-07 60.1 61 50.8
BolC6t36313H Brassica oleracea HOM05D004641 ORTHO05D022007 2.1e-06 57.4 44 61.4
BraA03t14352Z Brassica rapa HOM05D004641 ORTHO05D022007 8.1e-06 55.5 46 56.5
HanXRQChr13g0418021 Helianthus annuus HOM05D055070 ORTHO05D005871 8.1e-06 55.5 82 43.9


User provided reference genes

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