Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G1775 Salvia bowleyana HOM05D002231 ORTHO05D006103 2.2e-120 435.6 221 100.0
SalBow1G3407 Salvia bowleyana HOM05D002231 ORTHO05D006103 2.3e-101 372.5 235 83.4
MSTRG.501 Avicennia marina HOM05D002231 ORTHO05D006103 2.7e-62 242.7 163 76.7
MSTRG.8006 Avicennia marina HOM05D002231 ORTHO05D006103 3.5e-57 225.7 163 74.8
SGA_v2.0_scaffold9G04675 Striga asiatica HOM05D002231 ORTHO05D006103 1.7e-56 223.4 163 72.4
Migut.J00960 Erythranthe guttata HOM05D002231 ORTHO05D006103 1.5e-52 210.3 171 70.8
CSS0047868 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 6.3e-51 204.9 165 68.5
CSS0048016 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 6.3e-51 204.9 165 68.5
Oeu049136.1 Olea europaea HOM05D002231 ORTHO05D006103 4.1e-50 202.2 167 67.7
Oeu029193.1 Olea europaea HOM05D002231 ORTHO05D006103 5.4e-50 201.8 164 68.9
Cc11_g16940 Coffea canephora HOM05D002231 ORTHO05D006103 1.6e-49 200.3 164 68.3
Rhsim12G0025500 Rhododendron simsii HOM05D002231 ORTHO05D006103 3.8e-48 195.7 169 66.3
Dinv10954 Davidia involucrata HOM05D002231 ORTHO05D006103 5.0e-48 195.3 167 67.1
Hma1.2p1_0275F.1_g110740 Hydrangea macrophylla HOM05D002231 ORTHO05D006103 5.0e-48 195.3 177 63.3
GSVIVG01010488001 Vitis vinifera HOM05D002231 ORTHO05D006103 1.1e-47 194.1 162 69.1
Duzib248G1458 Durio zibethinus HOM05D002231 ORTHO05D006103 2.5e-47 193.0 171 63.7
Dinv17566 Davidia involucrata HOM05D002231 ORTHO05D005593 5.5e-47 191.8 165 66.1
Actinidia30646 Actinidia chinensis HOM05D002231 ORTHO05D006103 9.5e-47 191.0 167 68.3
Nitab4.5_0000155g0190 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.2e-46 190.7 161 65.8
COL.COLO4_20407 Corchorus olitorius HOM05D002231 ORTHO05D006103 1.0e-45 187.6 172 62.2
Gorai.002G183300 Gossypium raimondii HOM05D002231 ORTHO05D006103 2.3e-45 186.4 170 63.5
Ciclev10032446m.g Citrus clementina HOM05D002231 ORTHO05D006103 3.0e-45 186.0 168 64.3
Gohir.A01G160300 Gossypium hirsutum HOM05D002231 ORTHO05D006103 4.0e-45 185.7 170 64.1
Thecc.02G207900 Theobroma cacao HOM05D002231 ORTHO05D006103 5.2e-45 185.3 173 61.8
Nitab4.5_0002558g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 6.8e-45 184.9 164 63.4
Gohir.D01G147100 Gossypium hirsutum HOM05D002231 ORTHO05D006103 8.8e-45 184.5 170 62.9
Atru.chr11.2328 Acer truncatum HOM05D002231 ORTHO05D006103 4.4e-44 182.2 169 62.7
AUR62005623 Chenopodium quinoa HOM05D002231 ORTHO05D006103 7.5e-44 181.4 159 65.4
QL03p052604 Quercus lobata HOM05D002231 ORTHO05D006103 1.7e-43 180.3 164 64.6
TWI18G1086 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 1.7e-43 180.3 168 61.9
Sc11g0000450 Simmondsia chinensis HOM05D002231 ORTHO05D006103 2.2e-43 179.9 179 58.1
Duzib251G0325 Durio zibethinus HOM05D002231 ORTHO05D006103 3.7e-43 179.1 178 60.7
MD13G1119600 Malus domestica HOM05D002231 ORTHO05D006103 3.7e-43 179.1 162 61.7
Manes.12G011000 Manihot esculenta HOM05D002231 ORTHO05D006103 3.7e-43 179.1 171 60.8
EL10Ac6g13507 Beta vulgaris HOM05D002231 ORTHO05D006103 4.9e-43 178.7 159 64.8
MD16G1119800 Malus domestica HOM05D002231 ORTHO05D006103 4.9e-43 178.7 164 59.1
RcHm_v2.0_Chr4g0430201 Rosa chinensis HOM05D002231 ORTHO05D006103 4.9e-43 178.7 162 62.3
unitig_747.g21125 Utricularia gibba HOM05D002231 ORTHO05D006103 4.9e-43 178.7 154 63.0
CANSAT01G1083 Cannabis sativa HOM05D002231 ORTHO05D006103 6.3e-43 178.3 161 64.6
AUR62028925 Chenopodium quinoa HOM05D002231 ORTHO05D006103 6.3e-43 178.3 159 63.5
Nitab4.5_0004003g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 6.3e-43 178.3 159 64.2
TWI36G0137 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 6.3e-43 178.3 159 64.2
CiPaw.05G109300 Carya illinoinensis HOM05D002231 ORTHO05D006103 8.3e-43 177.9 166 62.0
Sopen04g017470 Solanum pennellii HOM05D002231 ORTHO05D006103 1.1e-42 177.6 163 62.6
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 1.4e-42 177.2 160 64.4
Cfa009373 Carpinus fangiana HOM05D002231 ORTHO05D006103 1.8e-42 176.8 165 61.8
FAN12G0590 Fragaria x ananassa HOM05D002231 ORTHO05D006103 2.4e-42 176.4 165 60.6
Lsat_1_v5_gn_4_3541 Lactuca sativa HOM05D002231 ORTHO05D006103 3.1e-42 176.0 165 60.6
Haze_12423 Corylus avellana HOM05D002231 ORTHO05D006103 4.1e-42 175.6 162 63.6
Prupe.1G225400 Prunus persica HOM05D002231 ORTHO05D006103 5.4e-42 175.3 159 61.0
Solyc04g045580.4 Solanum lycopersicum HOM05D002231 ORTHO05D006103 5.4e-42 175.3 163 62.0
FvH4_4g23720 Fragaria vesca HOM05D002231 ORTHO05D006103 9.2e-42 174.5 165 59.4
CiPaw.06G102900 Carya illinoinensis HOM05D002231 ORTHO05D006103 1.2e-41 174.1 166 63.3
FAN07G0699 Fragaria x ananassa HOM05D002231 ORTHO05D006103 1.2e-41 174.1 165 59.4
FAN17G0493 Fragaria x ananassa HOM05D002231 ORTHO05D005593 1.6e-41 173.7 162 59.3
FAN22G0585 Fragaria x ananassa HOM05D002231 ORTHO05D006103 1.6e-41 173.7 165 59.4
Gohir.A04G139800 Gossypium hirsutum HOM05D002231 ORTHO05D006103 2.7e-41 172.9 174 57.5
PSO017G2330 Papaver somniferum HOM05D002231 ORTHO05D006103 3.5e-41 172.6 163 60.1
Nitab4.5_0000067g0140 Nicotiana tabacum HOM05D002231 ORTHO05D006103 5.9e-41 171.8 189 55.6
TAR629G1028 Trochodendron aralioides HOM05D002231 ORTHO05D006103 1.0e-40 171.0 159 61.0
CDE02G1146 Ceratophyllum demersum HOM05D002231 ORTHO05D006103 1.7e-40 170.2 160 61.2
Hund25467 Selenicereus undatus HOM05D002231 ORTHO05D006103 1.7e-40 170.2 166 58.4
MBI11_g05330_MAGBIO Magnolia biondii HOM05D002231 ORTHO05D006103 2.3e-40 169.9 167 61.1
Nn3g16455 Nelumbo nucifera HOM05D002231 ORTHO05D006103 2.9e-40 169.5 167 61.1
Gorai.012G176000 Gossypium raimondii HOM05D002231 ORTHO05D006103 3.8e-40 169.1 173 57.2
Lj3C1069T6 Lonicera japonica HOM05D002231 ORTHO05D006103 5.0e-40 168.7 174 57.5
DCAR_026462 Daucus carota HOM05D002231 ORTHO05D006103 6.6e-40 168.3 195 53.3
Eucgr.B03496 Eucalyptus grandis HOM05D002231 ORTHO05D006103 6.6e-40 168.3 182 53.8
Gohir.D04G183000 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.9e-39 166.8 179 55.9
Potri.003G172000 Populus trichocarpa HOM05D002231 ORTHO05D006103 2.5e-39 166.4 171 57.3
Nn4g22308 Nelumbo nucifera HOM05D002231 ORTHO05D006103 9.5e-39 164.5 164 58.5
Glyma.11G250900 Glycine max HOM05D002231 ORTHO05D006103 1.2e-38 164.1 169 59.8
Sabra03G0125900 Salix brachista HOM05D002231 ORTHO05D005593 1.6e-38 163.7 169 58.0
Lalb_Chr23g0278101 Lupinus albus HOM05D002231 ORTHO05D006103 2.8e-38 162.9 101 81.2
Medtr3g085280 Medicago truncatula HOM05D002231 ORTHO05D006103 2.8e-38 162.9 164 57.9
Phvul.001G262200 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 3.6e-38 162.5 97 83.5
VMungo1383G1118 Vigna mungo HOM05D002231 ORTHO05D006103 6.1e-38 161.8 97 82.5
SalBow8G1223 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.8e-37 160.2 165 56.4
Lj6g0006303 Lotus japonicus HOM05D002231 ORTHO05D006103 2.3e-37 159.8 103 79.6
Glyma.18G006100 Glycine max HOM05D002231 ORTHO05D006103 3.0e-37 159.5 103 80.6
arahy.Tifrunner.gnm1.ann1.4LX5KX Arachis hypogaea HOM05D002231 ORTHO05D006103 4.0e-37 159.1 164 56.7
arahy.Tifrunner.gnm1.ann1.A5UQ16 Arachis hypogaea HOM05D002231 ORTHO05D006103 4.0e-37 159.1 164 56.7
Aqoxy5G03366 Aquilegia oxysepala HOM05D002231 ORTHO05D006103 5.2e-37 158.7 168 56.0
Psat5g096440 Pisum sativum HOM05D002231 ORTHO05D006103 5.2e-37 158.7 165 58.2
ClCG11G013620 Citrullus lanatus HOM05D002231 ORTHO05D006103 6.8e-37 158.3 165 57.0
TPR.G17792 Trifolium pratense HOM05D002231 ORTHO05D006103 6.8e-37 158.3 164 57.9
Potri.001G056500 Populus trichocarpa HOM05D002231 ORTHO05D006103 8.9e-37 157.9 169 56.8
Sed0020663 Sechium edule HOM05D002231 ORTHO05D006103 8.9e-37 157.9 170 55.9
PGR102G0892 Punica granatum HOM05D002231 ORTHO05D006103 1.2e-36 157.5 194 50.5
Manes.13G011701 Manihot esculenta HOM05D002231 ORTHO05D006103 1.5e-36 157.1 101 78.2
Ca_16456_v3 Cicer arietinum L. HOM05D002231 ORTHO05D006103 3.4e-36 156.0 167 56.3
CsaV3_5G030240 Cucumis sativus L. HOM05D002231 ORTHO05D006103 4.4e-36 155.6 158 58.9
A07p11870 Brassica napus HOM05D002231 ORTHO05D006103 7.5e-36 154.8 171 53.2
HanXRQChr12g0385441 Helianthus annuus HOM05D002231 ORTHO05D006103 7.5e-36 154.8 163 58.3
vmacro01059 Vaccinium macrocarpon HOM05D002231 ORTHO05D006103 9.8e-36 154.5 231 45.9
ATR0059G025 Amborella trichopoda HOM05D002231 ORTHO05D006103 1.3e-35 154.1 142 60.6
THA.LOC104807538 Tarenaya hassleriana HOM05D002231 ORTHO05D006103 1.3e-35 154.1 170 53.5
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 2.9e-35 152.9 172 52.9
Aa31LG7G9850 Aethionema arabicum HOM05D002231 ORTHO05D006103 4.9e-35 152.1 162 53.7
BcaC06g35283 Brassica carinata HOM05D002231 ORTHO05D006103 4.9e-35 152.1 172 52.9
MELO3C011862.2 Cucumis melo HOM05D002231 ORTHO05D006103 4.9e-35 152.1 161 57.1
C07p17810 Brassica napus HOM05D002231 ORTHO05D006103 6.4e-35 151.8 172 52.9
BolC7t42287H Brassica oleracea HOM05D002231 ORTHO05D006103 6.4e-35 151.8 172 52.9
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 1.4e-34 150.6 165 52.1
Lalb_Chr08g0230621 Lupinus albus HOM05D002231 ORTHO05D006103 1.4e-34 150.6 162 54.3
BolC5t31328H Brassica oleracea HOM05D002231 ORTHO05D006103 1.8e-34 150.2 165 52.1
CARHR026970 Cardamine hirsuta HOM05D002231 ORTHO05D006103 2.4e-34 149.8 164 53.0
Lsat_1_v5_gn_3_31041 Lactuca sativa HOM05D002231 ORTHO05D006103 4.1e-34 149.1 168 50.0
Sp1g23610 Schrenkiella parvula HOM05D002231 ORTHO05D006103 4.1e-34 149.1 164 56.1
BraA09t39361Z Brassica rapa HOM05D002231 ORTHO05D006103 5.4e-34 148.7 163 55.8
Thhalv10008813m.g Eutrema salsugineum HOM05D002231 ORTHO05D006103 5.4e-34 148.7 167 53.3
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 7.0e-34 148.3 167 52.7
BraA07t28971Z Brassica rapa HOM05D002231 ORTHO05D006103 7.0e-34 148.3 164 53.7
A09p38550 Brassica napus HOM05D002231 ORTHO05D006103 9.2e-34 147.9 163 55.2
AL1G40790 Arabidopsis lyrata HOM05D002231 ORTHO05D006103 1.6e-33 147.1 168 53.0
Sabra01G0040900 Salix brachista HOM05D002231 ORTHO05D006103 1.6e-33 147.1 181 54.7
AT1G27385 Arabidopsis thaliana HOM05D002231 ORTHO05D006103 2.0e-33 146.7 165 53.3
C05p26090 Brassica napus HOM05D002231 ORTHO05D006103 2.0e-33 146.7 165 50.9
Carub.0001s2592 Capsella rubella HOM05D002231 ORTHO05D006103 2.0e-33 146.7 164 53.0
ECA234G2919 Erigeron canadensis HOM05D002231 ORTHO05D006103 3.5e-33 146.0 83 84.3
Peaxi162Scf00518g00424 Petunia axillaris HOM05D002231 ORTHO05D006103 1.7e-32 143.7 100 74.0
Ah.02g130890 Amaranthus hybridus HOM05D002231 ORTHO05D006103 6.6e-32 141.7 161 56.5
Glyma.08G104500 Glycine max HOM05D002231 ORTHO05D006103 1.9e-31 140.2 111 69.4
Os04g0386500 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 9.5e-31 137.9 137 54.7
Phvul.L002246 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 2.1e-30 136.7 161 54.0
Os02g0507400 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 6.2e-30 135.2 103 65.0
Zm00001eb085510 Zea mays HOM05D002231 ORTHO05D006103 4.0e-29 132.5 86 72.1
HanXRQChr06g0174651 Helianthus annuus HOM05D002231 ORTHO05D006103 8.9e-29 131.3 166 44.6
Zm00001eb421060 Zea mays HOM05D002231 ORTHO05D006103 1.2e-28 131.0 97 69.1
DCAR_007004 Daucus carota HOM05D002231 ORTHO05D006103 5.8e-28 128.6 94 69.1
Cpa.g.sc808.1 Carica papaya HOM05D002231 ORTHO05D006103 9.8e-28 127.9 73 82.2
Lj4g0021495 Lotus japonicus HOM05D002231 ORTHO05D006103 1.4e-26 124.0 179 48.6
Pp3c15_19360 Physcomitrium patens HOM05D002231 ORTHO05D006103 7.0e-26 121.7 124 54.0
ECA246G2515 Erigeron canadensis HOM05D002231 ORTHO05D006103 2.7e-25 119.8 84 63.1
Pp3c9_19480 Physcomitrium patens HOM05D002231 ORTHO05D006103 4.6e-25 119.0 100 59.0
SMO246G0027 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 2.5e-23 113.2 86 64.0
SMO364G0411 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 3.3e-23 112.8 90 65.6
Lsat_1_v5_gn_4_56001 Lactuca sativa HOM05D002231 ORTHO05D006103 4.3e-23 112.5 134 47.8
ECA233G1565 Erigeron canadensis HOM05D002231 ORTHO05D006103 7.3e-23 111.7 143 49.0
CBR_g57027 Chara braunii HOM05D002231 ORTHO05D006103 1.8e-21 107.1 91 57.1
AagrBONN_evm.TU.Sc2ySwM_368.423 Anthoceros agrestis HOM05D002231 ORTHO05D006103 5.2e-21 105.5 126 50.8
HanXRQChr08g0207851 Helianthus annuus HOM05D002231 ORTHO05D006103 1.6e-17 94.0 162 38.3
arahy.Tifrunner.gnm1.ann1.1IJF7J Arachis hypogaea HOM05D002231 ORTHO05D006103 1.7e-16 90.5 159 41.5
arahy.Tifrunner.gnm1.ann1.RN2E3G Arachis hypogaea HOM05D002231 ORTHO05D006103 6.6e-16 88.6 56 76.8
TAR383G1026 Trochodendron aralioides HOM05D002231 ORTHO05D006103 1.1e-15 87.8 74 74.3
PRCOL_00004939 Prasinoderma coloniale HOM05D002231 ORTHO05D006103 1.4e-10 70.9 78 44.9
CDE05G2241 Ceratophyllum demersum HOM05D001859 ORTHO05D001836 2.4e-10 70.1 43 74.4
TAR636G2964 Trochodendron aralioides HOM05D002231 ORTHO05D006103 2.3e-08 63.5 35 91.4
C02p58440 Brassica napus HOM05D001393 ORTHO05D032808 6.6e-08 62.0 39 71.8
Cre02.g074700 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 1.9e-07 60.5 91 39.6
Cpa.g.sc43.61 Carica papaya HOM05D002231 ORTHO05D006103 8.1e-06 55.1 100 44.0


User provided reference genes

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