Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 4.0e-145 518.1 265 100.0
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 9.1e-105 384.0 222 85.6
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 2.0e-104 382.9 224 85.7
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 5.5e-102 374.8 224 82.1
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 8.0e-101 370.9 222 82.9
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 2.0e-99 366.3 236 78.0
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 3.7e-98 362.1 221 80.1
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 6.3e-98 361.3 222 79.7
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 8.3e-98 360.9 224 79.5
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 1.4e-97 360.1 222 79.3
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 7.0e-97 357.8 224 79.0
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 2.7e-96 355.9 223 78.5
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 2.7e-96 355.9 223 78.5
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 2.7e-96 355.9 221 79.6
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 4.5e-96 355.1 222 78.8
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 4.5e-96 355.1 222 78.8
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 5.9e-96 354.8 236 73.7
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 5.9e-96 354.8 232 75.0
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 5.9e-96 354.8 221 79.2
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 7.7e-96 354.4 236 74.6
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 1.0e-95 354.0 222 77.0
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 1.0e-95 354.0 237 74.7
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.0e-95 354.0 225 79.1
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 1.3e-95 353.6 221 77.4
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 1.3e-95 353.6 221 78.3
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 1.3e-95 353.6 224 78.1
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 1.3e-95 353.6 224 78.1
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 1.7e-95 353.2 222 77.9
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 1.7e-95 353.2 223 78.0
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.7e-95 353.2 222 79.3
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 2.9e-95 352.4 232 77.6
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 3.8e-95 352.1 259 69.9
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 3.8e-95 352.1 236 75.0
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 6.6e-95 351.3 223 76.7
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 6.6e-95 351.3 224 77.2
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 1.1e-94 350.5 226 77.4
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 1.9e-94 349.7 223 78.9
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 2.5e-94 349.4 235 72.3
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.5e-94 349.4 223 77.6
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 3.3e-94 349.0 223 77.1
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 5.5e-94 348.2 223 77.1
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 5.5e-94 348.2 221 78.7
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 5.5e-94 348.2 221 75.6
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 7.2e-94 347.8 223 78.0
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 9.5e-94 347.4 222 77.0
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 9.5e-94 347.4 223 77.1
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 1.2e-93 347.1 223 76.7
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 1.2e-93 347.1 221 76.9
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 1.2e-93 347.1 222 77.5
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 2.1e-93 346.3 237 73.4
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.6e-93 345.5 235 74.5
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 3.6e-93 345.5 221 76.9
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 4.7e-93 345.1 223 75.8
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 6.1e-93 344.7 221 76.5
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 8.0e-93 344.4 236 73.3
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 1.0e-92 344.0 223 75.3
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.0e-92 344.0 235 73.6
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 1.0e-92 344.0 223 76.7
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.4e-92 343.6 223 76.2
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.3e-92 342.8 222 75.7
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 2.3e-92 342.8 221 75.1
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 3.0e-92 342.4 221 76.5
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 3.0e-92 342.4 221 75.6
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 4.0e-92 342.0 221 74.7
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 4.0e-92 342.0 222 77.0
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 4.0e-92 342.0 226 74.8
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 5.2e-92 341.7 221 76.5
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 5.2e-92 341.7 221 76.0
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 5.2e-92 341.7 223 75.3
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 6.8e-92 341.3 224 76.3
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 6.8e-92 341.3 262 67.9
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 8.9e-92 340.9 221 76.5
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 1.2e-91 340.5 221 76.5
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 1.5e-91 340.1 224 75.4
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 3.4e-91 339.0 235 72.8
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 4.4e-91 338.6 224 75.9
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 4.4e-91 338.6 221 76.5
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 4.4e-91 338.6 221 76.5
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 4.4e-91 338.6 221 74.7
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 5.7e-91 338.2 224 76.3
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 5.7e-91 338.2 233 72.1
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 7.5e-91 337.8 221 74.7
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 9.8e-91 337.4 223 74.4
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 9.8e-91 337.4 223 74.4
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 2.2e-90 336.3 224 75.0
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 2.2e-90 336.3 224 75.0
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 2.2e-90 336.3 224 75.0
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 2.8e-90 335.9 224 75.4
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 6.3e-90 334.7 225 74.2
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 6.3e-90 334.7 208 79.8
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 3.1e-89 332.4 224 73.7
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.0e-87 327.4 227 73.6
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 1.7e-87 326.6 198 79.8
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 6.6e-87 324.7 222 71.6
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 1.9e-86 323.2 223 68.6
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 1.9e-86 323.2 221 72.9
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 2.5e-86 322.8 221 71.5
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 4.3e-86 322.0 226 73.0
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 4.3e-86 322.0 226 73.0
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 5.6e-86 321.6 251 68.5
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 7.3e-86 321.2 221 71.5
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.6e-85 320.1 223 70.9
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 8.0e-85 317.8 213 71.8
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 8.0e-85 317.8 221 70.6
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 4.4e-83 312.0 202 77.2
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.8e-83 311.6 234 67.9
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 6.4e-82 308.1 201 74.1
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 2.4e-81 306.2 201 77.1
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 4.1e-81 305.4 223 70.0
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 5.4e-81 305.1 192 79.2
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 5.4e-81 305.1 201 75.1
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 2.7e-80 302.8 233 67.4
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 4.6e-80 302.0 222 68.5
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 1.7e-79 300.1 199 74.9
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 2.3e-79 299.7 223 69.1
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 1.5e-78 297.0 199 73.9
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.8e-77 292.7 205 69.8
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 3.6e-77 292.4 221 67.4
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 2.6e-75 286.2 222 65.3
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.2e-74 283.1 201 71.1
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 3.7e-74 282.3 199 70.9
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 4.9e-74 282.0 223 65.9
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 6.4e-74 281.6 235 60.4
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 1.6e-72 276.9 194 71.6
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 8.6e-71 271.2 223 64.1
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 3.3e-70 269.2 233 61.8
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 7.3e-70 268.1 231 59.3
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 4.4e-67 258.8 187 72.2
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.8e-67 258.5 182 71.4
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 2.1e-64 250.0 170 72.9
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 2.3e-63 246.5 167 73.7
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 5.1e-63 245.4 159 75.5
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 1.4e-60 237.3 227 55.1
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 7.6e-59 231.5 231 54.1
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.3e-55 219.9 129 79.1
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 3.1e-52 209.5 148 71.6
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 1.2e-51 207.6 146 71.2
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.2e-49 199.5 223 48.9
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 9.6e-46 188.0 106 79.2
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 6.2e-45 185.3 131 71.0
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.2e-43 181.0 131 71.0
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 1.3e-42 177.6 144 61.8
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.3e-39 167.5 133 65.4
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.3e-37 161.0 158 58.2
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 3.2e-33 146.4 119 67.2
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.8e-28 130.6 75 78.7
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.8e-28 130.6 75 78.7
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 1.2e-27 127.9 116 56.0
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 1.5e-27 127.5 157 49.0
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 4.6e-24 115.9 192 37.0
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.8e-23 114.0 72 79.2
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.5e-22 110.9 66 78.8
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 4.3e-22 109.4 66 78.8
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 5.7e-22 109.0 66 77.3
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 7.4e-22 108.6 66 77.3
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 7.4e-22 108.6 66 77.3
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 1.2e-19 101.3 66 80.3
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 1.5e-19 100.9 90 56.7
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 7.2e-17 92.0 65 76.9
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 2.7e-16 90.1 68 72.1
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.0e-15 88.2 64 68.8
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 1.8e-15 87.4 64 70.3
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 1.8e-12 77.4 54 77.8
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 3.8e-10 69.7 44 75.0
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.1e-09 68.2 202 30.2
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.1e-09 68.2 64 56.2
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 4.2e-09 66.2 44 68.2
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 3.9e-07 59.7 62 48.4
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 7.4e-06 55.5 38 63.2
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 7.4e-06 55.5 38 63.2


User provided reference genes

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