Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G1648 Salvia bowleyana HOM05D004340 ORTHO05D006363 0.0e+00 1808.5 917 100.0
Migut.L01267 Erythranthe guttata HOM05D004340 ORTHO05D006363 0.0e+00 1436.8 916 80.3
MSTRG.717 Avicennia marina HOM05D004340 ORTHO05D006363 0.0e+00 1402.1 916 78.9
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 0.0e+00 1350.9 910 77.1
Dinv16674 Davidia involucrata HOM05D004340 ORTHO05D006363 0.0e+00 1305.0 916 74.6
GSVIVG01019948001 Vitis vinifera HOM05D004340 ORTHO05D006363 0.0e+00 1256.1 915 71.9
Sopen05g003610 Solanum pennellii HOM05D004340 ORTHO05D006363 0.0e+00 1250.0 916 70.0
PGSC0003DMG400018437 Solanum tuberosum HOM05D004340 ORTHO05D006363 0.0e+00 1248.4 916 70.1
Solyc05g007750.4 Solanum lycopersicum HOM05D004340 ORTHO05D006363 0.0e+00 1245.7 916 70.1
QL03p068099 Quercus lobata HOM05D004340 ORTHO05D006363 0.0e+00 1243.8 925 70.4
Nitab4.5_0000040g0090 Nicotiana tabacum HOM05D004340 ORTHO05D006363 0.0e+00 1237.2 945 68.3
CAN.G1335.16 Capsicum annuum HOM05D004340 ORTHO05D006363 0.0e+00 1234.6 918 69.7
Peaxi162Scf00222g00716 Petunia axillaris HOM05D004340 ORTHO05D006363 0.0e+00 1233.8 909 70.2
TAR629G2604 Trochodendron aralioides HOM05D004340 ORTHO05D006363 0.0e+00 1229.9 910 69.9
CSS0018825 Camellia sinensis var. sinensis HOM05D004340 ORTHO05D006363 0.0e+00 1226.8 918 69.6
Nitab4.5_0004300g0030 Nicotiana tabacum HOM05D004340 ORTHO05D006363 0.0e+00 1223.0 945 67.4
MD16G1069200 Malus domestica HOM05D004340 ORTHO05D006363 0.0e+00 1220.7 919 70.0
Cc11_g12720 Coffea canephora HOM05D004340 ORTHO05D006363 0.0e+00 1220.3 916 70.1
Prupe.1G035400 Prunus persica HOM05D004340 ORTHO05D006363 0.0e+00 1219.5 921 69.5
Rhsim10G0119600 Rhododendron simsii HOM05D004340 ORTHO05D006363 0.0e+00 1216.8 930 68.9
Atru.chr11.1746 Acer truncatum HOM05D004340 ORTHO05D006363 0.0e+00 1204.9 915 68.9
Thecc.02G342300 Theobroma cacao HOM05D004340 ORTHO05D006363 0.0e+00 1204.5 913 69.6
Cfa008953 Carpinus fangiana HOM05D004340 ORTHO05D006363 0.0e+00 1204.1 919 69.3
Gorai.013G087900 Gossypium raimondii HOM05D004340 ORTHO05D006363 0.0e+00 1200.7 913 69.3
Sc11g0002100 Simmondsia chinensis HOM05D004340 ORTHO05D006363 0.0e+00 1198.3 915 69.1
Atru.chr10.1247 Acer truncatum HOM05D004340 ORTHO05D006363 0.0e+00 1196.8 915 68.7
vmacro05308 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 0.0e+00 1194.1 918 68.8
Gohir.A13G077700 Gossypium hirsutum HOM05D004340 ORTHO05D006363 0.0e+00 1193.3 913 69.1
Gohir.D13G076900 Gossypium hirsutum HOM05D004340 ORTHO05D006363 0.0e+00 1192.9 913 69.0
Haze_11982 Corylus avellana HOM05D004340 ORTHO05D006363 0.0e+00 1192.6 946 67.5
Lj3A1035G45 Lonicera japonica HOM05D004340 ORTHO05D006363 0.0e+00 1192.2 942 67.5
RcHm_v2.0_Chr4g0439421 Rosa chinensis HOM05D004340 ORTHO05D006363 0.0e+00 1191.8 919 68.9
Manes.01G034000 Manihot esculenta HOM05D004340 ORTHO05D006363 0.0e+00 1187.6 912 68.6
PSO063G1986 Papaver somniferum HOM05D004340 ORTHO05D006363 0.0e+00 1186.0 911 69.0
Nn4g23232 Nelumbo nucifera HOM05D004340 ORTHO05D006363 0.0e+00 1181.8 908 68.9
Potri.008G089600 Populus trichocarpa HOM05D004340 ORTHO05D006363 0.0e+00 1177.2 918 68.1
CANSAT64G1884 Cannabis sativa HOM05D004340 ORTHO05D006363 0.0e+00 1176.8 921 67.5
TPR.G34046 Trifolium pratense HOM05D004340 ORTHO05D006363 0.0e+00 1176.4 916 66.9
TWI79G0307 Tripterygium wilfordii HOM05D004340 ORTHO05D006363 0.0e+00 1176.4 918 67.6
Phvul.001G233800 Phaseolus vulgaris HOM05D004340 ORTHO05D006363 0.0e+00 1174.5 910 66.9
Ciclev10030675m.g Citrus clementina HOM05D004340 ORTHO05D006363 0.0e+00 1173.3 914 67.8
PGR102G3073 Punica granatum HOM05D004340 ORTHO05D006363 0.0e+00 1172.9 916 67.4
PSO832G0091 Papaver somniferum HOM05D004340 ORTHO05D006363 0.0e+00 1172.5 944 67.1
Glyma.18G036900 Glycine max HOM05D004340 ORTHO05D006363 0.0e+00 1171.8 910 67.3
Glyma.11G220500 Glycine max HOM05D004340 ORTHO05D006363 0.0e+00 1171.4 910 67.1
EL10Ac6g13244 Beta vulgaris HOM05D004340 ORTHO05D006363 0.0e+00 1165.6 907 67.3
Medtr4g082265 Medicago truncatula HOM05D004340 ORTHO05D006363 0.0e+00 1165.6 916 66.9
DCAR_027428 Daucus carota HOM05D004340 ORTHO05D006363 0.0e+00 1163.7 920 66.7
FAN04G3196 Fragaria x ananassa HOM05D004340 ORTHO05D006363 0.0e+00 1162.9 918 68.3
Medtr4g082150 Medicago truncatula HOM05D004340 ORTHO05D006363 0.0e+00 1161.0 916 66.4
VMungo1383G3199 Vigna mungo HOM05D004340 ORTHO05D006363 0.0e+00 1161.0 910 66.5
Aqoxy3G03456 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 0.0e+00 1159.1 916 66.0
Ca_18821_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 0.0e+00 1158.3 910 67.1
AUR62032818 Chenopodium quinoa HOM05D004340 ORTHO05D006363 0.0e+00 1157.1 913 67.4
Sabra08G0067000 Salix brachista HOM05D004340 ORTHO05D006363 0.0e+00 1156.0 918 67.2
Lsat_1_v5_gn_8_50141 Lactuca sativa HOM05D004340 ORTHO05D006363 0.0e+00 1154.4 911 67.5
AUR62005824 Chenopodium quinoa HOM05D004340 ORTHO05D006363 0.0e+00 1151.3 916 66.8
THA.LOC104801804 Tarenaya hassleriana HOM05D004340 ORTHO05D006363 0.0e+00 1151.3 913 65.6
Eucgr.I00217 Eucalyptus grandis HOM05D004340 ORTHO05D006363 0.0e+00 1150.6 897 66.7
HanXRQChr12g0362121 Helianthus annuus HOM05D004340 ORTHO05D006363 0.0e+00 1147.1 916 66.4
arahy.Tifrunner.gnm1.ann1.AR8P07 Arachis hypogaea HOM05D004340 ORTHO05D006363 0.0e+00 1146.7 917 65.9
FAN18G2257 Fragaria x ananassa HOM05D004340 ORTHO05D006363 0.0e+00 1145.6 913 67.5
Lj4g0013877 Lotus japonicus HOM05D004340 ORTHO05D006363 0.0e+00 1145.2 914 66.5
FAN13G0065 Fragaria x ananassa HOM05D004340 ORTHO05D006363 0.0e+00 1144.4 913 67.6
arahy.Tifrunner.gnm1.ann1.MXBT1J Arachis hypogaea HOM05D004340 ORTHO05D006363 0.0e+00 1141.7 917 65.5
Carub.0003s2628 Capsella rubella HOM05D004340 ORTHO05D006363 0.0e+00 1125.9 913 64.3
AL3G42300 Arabidopsis lyrata HOM05D004340 ORTHO05D006363 0.0e+00 1120.1 907 63.7
CsaV3_5G025240 Cucumis sativus L. HOM05D004340 ORTHO05D006363 0.0e+00 1118.2 918 64.8
AT2G04660 Arabidopsis thaliana HOM05D004340 ORTHO05D006363 0.0e+00 1114.0 905 63.9
MELO3C002960.2 Cucumis melo HOM05D004340 ORTHO05D006363 0.0e+00 1110.5 918 64.4
Medtr7g021880 Medicago truncatula HOM05D004340 ORTHO05D006363 0.0e+00 1109.0 908 64.5
Hund25218 Selenicereus undatus HOM05D004340 ORTHO05D006363 0.0e+00 1109.0 876 67.2
Sp7g01960 Schrenkiella parvula HOM05D004340 ORTHO05D006363 0.0e+00 1106.7 911 63.2
Thhalv10027638m.g Eutrema salsugineum HOM05D004340 ORTHO05D006363 0.0e+00 1105.5 911 63.3
Ah.03g134830 Amaranthus hybridus HOM05D004340 ORTHO05D006363 0.0e+00 1101.7 968 62.3
Aa31LG10G13720 Aethionema arabicum HOM05D004340 ORTHO05D006363 0.0e+00 1096.6 947 61.5
CARHR261990 Cardamine hirsuta HOM05D004340 ORTHO05D006363 0.0e+00 1096.3 915 63.0
BcaB05g21922 Brassica carinata HOM05D004340 ORTHO05D006363 0.0e+00 1083.9 913 62.8
COL.COLO4_27998 Corchorus olitorius HOM05D004340 ORTHO05D006363 0.0e+00 1080.5 903 63.8
BcaC03g13079 Brassica carinata HOM05D004340 ORTHO05D006363 0.0e+00 1078.9 909 62.3
Cpa.g.sc1.50 Carica papaya HOM05D004340 ORTHO05D006363 0.0e+00 1077.0 807 71.1
ECA233G3760 Erigeron canadensis HOM05D004340 ORTHO05D006363 6.3e-312 1073.5 805 71.3
BolC2t06011H Brassica oleracea HOM05D004340 ORTHO05D006363 3.6e-310 1068.1 909 61.8
ClCG09G021920 Citrullus lanatus HOM05D004340 ORTHO05D006363 1.1e-309 1066.6 918 62.6
FvH4_5g29350 Fragaria vesca HOM05D004340 ORTHO05D006363 8.9e-309 1063.5 851 67.5
BraA02t04684Z Brassica rapa HOM05D004340 ORTHO05D006363 4.4e-308 1061.2 909 61.9
ATR0564G449 Amborella trichopoda HOM05D004340 ORTHO05D006363 2.7e-305 1052.0 912 61.3
Sed0000698 Sechium edule HOM05D004340 ORTHO05D006363 4.6e-305 1051.2 918 62.2
Lj1g0001827 Lotus japonicus HOM05D004340 ORTHO05D006363 9.9e-300 1033.5 917 61.1
vmacro11375 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 2.9e-299 1031.9 1153 52.1
Zm00001eb227040 Zea mays HOM05D004340 ORTHO05D006363 3.8e-299 1031.6 889 60.7
Os04g0484800 Oryza sativa ssp. japonica HOM05D004340 ORTHO05D006363 1.1e-298 1030.0 889 61.3
CiPaw.05G131900 Carya illinoinensis HOM05D004340 ORTHO05D006363 3.2e-298 1028.5 744 72.7
MBI05_g36413_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D006363 3.3e-295 1018.5 735 72.5
BraA04t16952Z Brassica rapa HOM05D004340 ORTHO05D006363 9.0e-293 1010.4 901 60.2
BolC4t26245H Brassica oleracea HOM05D004340 ORTHO05D006363 2.6e-292 1008.8 900 60.8
Lalb_Chr05g0220271 Lupinus albus HOM05D004340 ORTHO05D006363 2.6e-292 1008.8 784 68.5
unitig_747.g21183 Utricularia gibba HOM05D004340 ORTHO05D006363 2.6e-292 1008.8 912 60.9
Aqoxy3G02559 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 2.2e-291 1005.7 925 58.4
C04p46590 Brassica napus HOM05D004340 ORTHO05D006363 1.1e-290 1003.4 901 60.6
BcaB06g27417 Brassica carinata HOM05D004340 ORTHO05D006363 1.3e-286 989.9 915 58.8
A04p12890 Brassica napus HOM05D004340 ORTHO05D006363 7.6e-284 980.7 947 56.2
Psat7g160080 Pisum sativum HOM05D004340 ORTHO05D006363 5.1e-280 968.0 708 70.9
Duzib251G0421 Durio zibethinus HOM05D004340 ORTHO05D006363 1.4e-274 949.9 662 74.6
TPR.G5981 Trifolium pratense HOM05D004340 ORTHO05D006363 1.2e-268 930.2 919 56.7
HPP92_021921 Vanilla planifolia HOM05D004340 ORTHO05D006363 1.4e-258 896.7 902 55.2
Ca_29729_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 1.5e-247 860.1 658 68.7
Oeu005760.1 Olea europaea HOM05D004340 ORTHO05D006363 1.5e-234 817.0 924 52.3
Mapoly0122s0055 Marchantia polymorpha HOM05D004340 ORTHO05D006363 4.7e-201 705.7 996 43.0
Pp3c11_22070 Physcomitrium patens HOM05D004340 ORTHO05D006363 6.2e-201 705.3 1011 42.5
Rhsim10G0051900 Rhododendron simsii HOM05D004340 ORTHO05D006363 1.6e-196 690.6 905 45.7
AagrBONN_evm.TU.Sc2ySwM_344.3807 Anthoceros agrestis HOM05D004340 ORTHO05D006363 1.9e-189 667.2 857 46.2
SMO361G0530 Selaginella moellendorffii HOM05D004340 ORTHO05D006363 6.0e-188 662.1 763 49.5
TPR.G26175 Trifolium pratense HOM05D004340 ORTHO05D006363 5.1e-187 659.1 512 67.8
Actinidia33215 Actinidia chinensis HOM05D004340 ORTHO05D006363 2.1e-169 600.5 858 44.4
SEGI_17726 Sequoiadendron giganteum HOM05D004340 ORTHO05D006363 8.2e-169 598.6 642 52.6
vmacro05171 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 3.0e-155 553.5 567 57.5
HPP92_022008 Vanilla planifolia HOM05D004340 ORTHO05D006363 3.1e-144 516.9 445 62.9
CDE04G0644 Ceratophyllum demersum HOM05D004340 ORTHO05D006363 5.2e-139 499.6 469 59.3
HPP92_022007 Vanilla planifolia HOM05D004340 ORTHO05D006363 3.1e-112 410.6 424 52.4
Glyma.10G070000 Glycine max HOM05D004340 ORTHO05D006363 1.6e-111 408.3 273 74.4
PRCOL_00002008 Prasinoderma coloniale HOM05D004340 ORTHO05D006363 5.0e-110 403.3 703 38.1
Prupe.1G191200 Prunus persica HOM05D004340 ORTHO05D006363 9.8e-106 389.0 317 65.0
MCO02G279 Micromonas commoda HOM05D004340 ORTHO05D006363 6.6e-102 376.3 708 34.2
Oeu050624.1 Olea europaea HOM05D004340 ORTHO05D006363 1.1e-88 332.4 187 89.3
vmacro05169 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 2.6e-74 284.6 303 51.5
Ca_30738_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 1.3e-62 245.7 172 70.9
Cre10.g460532 Chlamydomonas reinhardtii HOM05D004340 ORTHO05D006363 1.3e-60 239.2 880 24.1
CDE04G2617 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 1.4e-59 235.7 181 64.6
C02p00140 Brassica napus HOM05D004340 ORTHO05D006363 9.0e-59 233.0 175 66.3
Eucgr.L00670 Eucalyptus grandis HOM05D004340 ORTHO05D006363 3.4e-42 177.9 172 61.0
CBR_g543 Chara braunii HOM05D004340 ORTHO05D006363 1.1e-40 172.9 363 35.0
SHI21659 Sapria himalayana HOM05D004340 ORTHO05D006363 2.7e-39 168.3 140 62.9
Nn1g04521 Nelumbo nucifera HOM05D004340 ORTHO05D006363 6.1e-39 167.2 106 77.4
CBR_g545 Chara braunii HOM05D004340 ORTHO05D006363 9.7e-37 159.8 216 39.4
Eucgr.L00684 Eucalyptus grandis HOM05D004340 ORTHO05D006363 6.3e-36 157.1 187 50.3
TPR.G26189 Trifolium pratense HOM05D004340 ORTHO05D006363 6.9e-35 153.7 184 47.8
Cfa022061 Carpinus fangiana HOM05D004340 ORTHO05D125423 3.7e-28 131.3 583 24.5
vmacro05170 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 5.3e-27 127.5 82 78.0
Nn1g04520 Nelumbo nucifera HOM05D004340 ORTHO05D006363 5.0e-25 120.9 69 82.6
Medtr7g022050 Medicago truncatula HOM05D001042 ORTHO05D007836 2.1e-23 115.5 119 54.6
Cpa.g.sc1.51 Carica papaya HOM05D004340 ORTHO05D014919 5.2e-22 110.9 98 54.1
MBI05_g36411_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D014919 3.3e-21 108.2 204 33.3
RcHm_v2.0_Chr1g0372981 Rosa chinensis HOM05D004340 ORTHO05D013606 3.3e-21 108.2 75 72.0
PSO423G0166 Papaver somniferum HOM05D004340 ORTHO05D006363 1.2e-15 89.7 108 51.9
Medtr0073s0020 Medicago truncatula HOM05D001042 ORTHO05D007836 1.0e-14 86.7 60 68.3
Nn1g04519 Nelumbo nucifera HOM05D004340 ORTHO05D006363 9.7e-13 80.1 150 39.3
BolC2t12024H Brassica oleracea HOM05D004340 ORTHO05D040691 1.3e-12 79.7 112 42.9
Potri.008G089100 Populus trichocarpa HOM05D004340 ORTHO05D005225 3.7e-12 78.2 71 62.0
SHI21660 Sapria himalayana HOM05D004340 ORTHO05D006363 1.8e-11 75.9 100 44.0
EL10Ac2g03889 Beta vulgaris HOM05D004340 ORTHO05D014919 3.5e-10 71.6 88 43.2
SEGI_26412 Sequoiadendron giganteum HOM05D004340 ORTHO05D014919 1.3e-09 69.7 87 35.6
Nn1g04518 Nelumbo nucifera HOM05D004340 ORTHO05D014919 5.0e-09 67.8 64 48.4
Lalb_Chr05g0220261 Lupinus albus HOM05D004340 ORTHO05D014919 1.1e-08 66.6 74 41.9
SHI21661 Sapria himalayana HOM05D004340 ORTHO05D006363 2.5e-08 65.5 72 50.0
C02p59600 Brassica napus HOM05D004340 ORTHO05D040691 7.2e-08 63.9 102 38.2
BcaC07g37997 Brassica carinata HOM05D004340 ORTHO05D014919 4.7e-07 61.2 70 40.0
MD13G1068900 Malus domestica HOM05D004340 ORTHO05D006363 2.3e-06 58.9 34 79.4
RcHm_v2.0_Chr1g0327871 Rosa chinensis HOM05D004340 ORTHO05D006363 2.3e-06 58.9 31 90.3
SHI21663 Sapria himalayana HOM05D004340 ORTHO05D014919 3.0e-06 58.5 73 34.2
C08p42990 Brassica napus HOM05D004340 ORTHO05D014919 6.8e-06 57.4 112 31.2


User provided reference genes

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