Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 5.0e-78 294.3 140 100.0
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 4.9e-41 171.4 97 86.6
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.9e-40 169.5 97 86.6
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 3.2e-40 168.7 97 84.5
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 1.6e-39 166.4 97 84.5
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 1.6e-39 166.4 97 84.5
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 2.1e-39 166.0 97 83.5
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 2.1e-39 166.0 127 68.5
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 4.6e-39 164.9 97 83.5
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 4.6e-39 164.9 97 83.5
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 1.0e-38 163.7 97 82.5
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 1.7e-38 162.9 97 82.5
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 3.0e-38 162.2 97 80.4
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 3.0e-38 162.2 97 78.4
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 3.0e-38 162.2 97 79.4
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 3.0e-38 162.2 97 78.4
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 3.9e-38 161.8 97 81.4
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 5.1e-38 161.4 97 80.4
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 5.1e-38 161.4 97 80.4
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 6.6e-38 161.0 98 84.7
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 6.6e-38 161.0 97 80.4
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 1.1e-37 160.2 97 82.5
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 2.5e-37 159.1 97 80.4
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 4.3e-37 158.3 97 80.4
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 5.6e-37 157.9 98 81.6
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 7.3e-37 157.5 97 80.4
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 9.6e-37 157.1 97 79.4
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 9.6e-37 157.1 97 80.4
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 9.6e-37 157.1 98 81.6
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 9.6e-37 157.1 97 75.3
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 9.6e-37 157.1 97 75.3
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 9.6e-37 157.1 97 77.3
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 9.6e-37 157.1 97 80.4
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.3e-36 156.8 94 81.9
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 1.3e-36 156.8 97 77.3
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 1.3e-36 156.8 98 81.6
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.3e-36 156.8 97 75.3
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.3e-36 156.8 97 80.4
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 1.3e-36 156.8 97 80.4
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 1.6e-36 156.4 100 79.0
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 1.6e-36 156.4 111 71.2
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 2.8e-36 155.6 99 78.8
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 2.8e-36 155.6 97 79.4
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 2.8e-36 155.6 127 65.4
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 2.8e-36 155.6 97 80.4
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 3.6e-36 155.2 97 78.4
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 3.6e-36 155.2 97 78.4
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 4.8e-36 154.8 97 76.3
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 6.2e-36 154.5 97 76.3
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 6.2e-36 154.5 97 78.4
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 8.1e-36 154.1 98 79.6
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 1.1e-35 153.7 97 76.3
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 1.1e-35 153.7 97 78.4
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 1.1e-35 153.7 97 73.2
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 1.4e-35 153.3 97 76.3
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 1.8e-35 152.9 97 78.4
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 1.8e-35 152.9 97 77.3
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 2.4e-35 152.5 97 73.2
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 2.4e-35 152.5 97 78.4
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 2.4e-35 152.5 97 73.2
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 3.1e-35 152.1 97 77.3
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 3.1e-35 152.1 113 68.1
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 3.1e-35 152.1 113 68.1
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 3.1e-35 152.1 96 76.0
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 4.0e-35 151.8 97 76.3
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 4.0e-35 151.8 97 76.3
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 5.3e-35 151.4 113 69.0
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 5.3e-35 151.4 112 69.6
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 5.3e-35 151.4 96 78.1
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 5.3e-35 151.4 97 76.3
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 9.0e-35 150.6 97 73.2
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 9.0e-35 150.6 113 69.0
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 1.2e-34 150.2 97 75.3
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.2e-34 150.2 97 74.2
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.5e-34 149.8 95 74.7
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 1.5e-34 149.8 113 68.1
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 2.0e-34 149.4 97 73.2
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 2.6e-34 149.1 98 75.5
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 2.6e-34 149.1 94 75.5
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 2.6e-34 149.1 98 77.6
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 4.5e-34 148.3 107 70.1
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 4.5e-34 148.3 114 68.4
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 7.6e-34 147.5 97 72.2
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 7.6e-34 147.5 97 72.2
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 9.9e-34 147.1 97 75.3
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 1.3e-33 146.7 97 71.1
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 1.3e-33 146.7 98 75.5
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 1.3e-33 146.7 98 76.5
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 1.7e-33 146.4 96 74.0
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.7e-33 146.4 96 74.0
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 1.7e-33 146.4 96 72.9
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 1.7e-33 146.4 97 74.2
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 2.2e-33 146.0 88 81.8
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 2.2e-33 146.0 98 74.5
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 2.9e-33 145.6 97 71.1
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 2.9e-33 145.6 97 72.2
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 2.9e-33 145.6 97 77.3
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 4.9e-33 144.8 96 71.9
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 6.4e-33 144.4 97 71.1
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 6.4e-33 144.4 97 73.2
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 1.1e-32 143.7 98 73.5
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.1e-32 143.7 98 72.4
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 2.4e-32 142.5 98 73.5
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 2.4e-32 142.5 97 71.1
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 2.4e-32 142.5 113 65.5
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 3.2e-32 142.1 97 72.2
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 4.2e-32 141.7 97 71.1
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 4.2e-32 141.7 97 71.1
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 4.2e-32 141.7 97 72.2
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 4.2e-32 141.7 97 71.1
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 1.2e-31 140.2 97 71.1
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 1.6e-31 139.8 97 70.1
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 1.6e-31 139.8 97 70.1
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 2.7e-31 139.0 100 69.0
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 2.7e-31 139.0 97 70.1
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 2.7e-31 139.0 97 70.1
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 4.6e-31 138.3 97 69.1
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 4.6e-31 138.3 82 79.3
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 4.6e-31 138.3 97 72.2
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 1.0e-30 137.1 100 68.0
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 1.0e-30 137.1 100 68.0
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 2.3e-30 136.0 97 69.1
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 3.0e-30 135.6 99 71.7
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 3.9e-30 135.2 99 69.7
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 5.1e-30 134.8 82 76.8
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 5.1e-30 134.8 82 76.8
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 8.7e-30 134.0 98 68.4
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 8.7e-30 134.0 98 68.4
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 8.7e-30 134.0 98 68.4
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 1.1e-29 133.7 100 70.0
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 1.1e-29 133.7 100 68.0
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 1.1e-29 133.7 100 68.0
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 1.1e-29 133.7 100 68.0
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 1.5e-29 133.3 100 68.0
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.5e-29 133.3 91 70.3
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 3.3e-29 132.1 100 67.0
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 3.3e-29 132.1 125 56.8
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 2.4e-27 125.9 97 67.0
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 4.0e-27 125.2 81 77.8
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 6.9e-27 124.4 98 65.3
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 3.4e-26 122.1 97 66.0
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 5.8e-26 121.3 97 64.9
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 4.9e-25 118.2 76 76.3
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 6.4e-25 117.9 101 60.4
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 5.5e-24 114.8 73 72.6
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 4.6e-23 111.7 93 64.5
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 6.0e-23 111.3 82 72.0
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 1.1e-21 107.1 93 57.0
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.5e-21 106.7 83 67.5
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 1.9e-21 106.3 69 75.4
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 2.8e-20 102.4 106 54.7
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 1.8e-19 99.8 76 69.7
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 2.7e-15 85.9 125 43.2
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 9.0e-11 70.9 82 46.3
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 6.7e-06 54.7 72 47.2


User provided reference genes

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