Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 4.1e-119 431.4 216 100.0
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 9.8e-81 303.9 218 74.3
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 2.0e-78 296.2 209 71.8
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 2.3e-77 292.7 215 71.2
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 1.8e-74 283.1 215 69.3
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 7.0e-71 271.2 221 66.5
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 3.9e-69 265.4 219 66.2
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 8.6e-69 264.2 214 64.5
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 4.3e-68 261.9 227 65.2
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 5.6e-68 261.5 224 65.2
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 2.1e-67 259.6 198 69.7
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 6.2e-67 258.1 224 64.7
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 8.0e-67 257.7 212 67.0
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.0e-66 257.3 227 63.9
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 3.1e-66 255.8 192 68.8
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 5.2e-66 255.0 209 63.2
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 8.9e-66 254.2 166 75.9
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 1.5e-65 253.4 223 61.9
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 2.0e-65 253.1 223 61.9
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 3.4e-65 252.3 223 63.2
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 4.4e-65 251.9 211 63.0
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 1.3e-64 250.4 180 70.0
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 1.3e-64 250.4 190 70.0
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 2.9e-64 249.2 172 70.9
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 6.4e-64 248.1 157 77.1
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 1.4e-63 246.9 169 74.0
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 1.4e-63 246.9 218 62.8
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 1.9e-63 246.5 220 61.4
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 2.4e-63 246.1 228 61.0
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 7.0e-63 244.6 197 65.0
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 7.0e-63 244.6 170 71.8
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 7.0e-63 244.6 157 76.4
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 9.2e-63 244.2 164 74.4
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 2.0e-62 243.0 222 59.5
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 4.6e-62 241.9 167 71.3
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 6.0e-62 241.5 221 62.9
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 7.8e-62 241.1 223 61.0
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 7.8e-62 241.1 134 82.1
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 7.8e-62 241.1 214 63.1
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 1.3e-61 240.4 173 69.4
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 1.7e-61 240.0 228 58.8
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 1.7e-61 240.0 169 72.8
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 1.7e-61 240.0 169 72.8
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 3.0e-61 239.2 128 87.5
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 3.9e-61 238.8 226 59.7
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 3.9e-61 238.8 157 73.9
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 3.9e-61 238.8 161 72.0
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 5.0e-61 238.4 153 75.8
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 6.6e-61 238.0 223 60.5
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 1.1e-60 237.3 229 59.0
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 1.5e-60 236.9 223 59.6
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 1.5e-60 236.9 228 59.2
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 1.9e-60 236.5 224 59.4
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 1.9e-60 236.5 231 58.9
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 2.5e-60 236.1 229 58.5
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 3.3e-60 235.7 227 57.7
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 4.3e-60 235.3 158 74.1
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 4.3e-60 235.3 193 66.8
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 4.3e-60 235.3 207 62.8
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 5.6e-60 235.0 191 64.9
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 9.5e-60 234.2 202 61.4
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 9.5e-60 234.2 150 75.3
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 1.6e-59 233.4 220 59.5
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 2.1e-59 233.0 212 62.3
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 3.6e-59 232.3 223 59.6
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 3.6e-59 232.3 131 81.7
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 4.7e-59 231.9 170 70.0
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 8.1e-59 231.1 170 70.0
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 8.1e-59 231.1 156 71.8
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 1.1e-58 230.7 160 69.4
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 1.8e-58 229.9 230 57.4
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 1.8e-58 229.9 191 64.9
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 1.8e-58 229.9 217 58.5
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 4.0e-58 228.8 149 73.8
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 4.0e-58 228.8 189 65.6
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 4.0e-58 228.8 189 65.6
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 5.2e-58 228.4 216 56.0
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 5.2e-58 228.4 223 57.8
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 6.8e-58 228.0 156 72.4
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 6.8e-58 228.0 199 62.8
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 8.9e-58 227.6 227 55.9
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 2.6e-57 226.1 216 56.0
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 3.4e-57 225.7 209 57.9
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 3.4e-57 225.7 166 66.9
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 4.4e-57 225.3 153 71.9
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 9.8e-57 224.2 194 60.8
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 3.7e-56 222.2 237 54.9
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 4.9e-56 221.9 164 65.9
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 6.4e-56 221.5 190 62.1
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 6.4e-56 221.5 132 78.8
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 8.3e-56 221.1 188 61.2
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 1.4e-55 220.3 187 62.6
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 1.4e-55 220.3 187 62.6
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 2.4e-55 219.5 194 60.3
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 1.2e-54 217.2 188 61.7
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 1.6e-54 216.9 185 62.2
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 2.7e-54 216.1 124 80.6
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 4.6e-54 215.3 193 60.1
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 4.6e-54 215.3 251 51.4
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 4.6e-54 215.3 137 75.2
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 7.8e-54 214.5 192 60.4
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 7.8e-54 214.5 192 60.4
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 7.8e-54 214.5 192 60.4
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 1.0e-53 214.2 184 61.4
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 1.3e-53 213.8 122 80.3
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 1.3e-53 213.8 184 63.0
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 3.0e-53 212.6 184 59.2
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 3.9e-53 212.2 191 59.2
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 1.5e-52 210.3 186 60.2
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 5.6e-52 208.4 192 59.9
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 1.2e-51 207.2 126 76.2
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 1.2e-51 207.2 132 71.2
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 1.6e-51 206.8 126 75.4
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 1.6e-51 206.8 126 75.4
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 2.0e-49 199.9 128 71.1
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 1.3e-48 197.2 171 57.3
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.0e-45 187.6 158 57.6
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 7.3e-44 181.4 148 58.8
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 7.3e-44 181.4 148 58.8
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.5e-41 173.7 151 56.3
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 9.6e-36 154.5 119 70.6
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 6.9e-34 148.3 102 74.5
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 4.2e-31 139.0 77 84.4
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 9.3e-31 137.9 76 85.5
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 8.7e-29 131.3 118 56.8
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 6.9e-26 121.7 131 48.9
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 3.8e-24 115.9 120 48.3
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 1.8e-21 107.1 141 39.7
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 4.8e-19 99.0 81 64.2
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 1.4e-18 97.4 56 73.2
SGA_v2.0_scaffold120G33007 Striga asiatica HOM05D002254 ORTHO05D007410 1.2e-17 94.4 58 70.7
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 2.0e-17 93.6 49 83.7
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 3.4e-17 92.8 89 60.7
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 5.8e-17 92.0 54 74.1
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 1.3e-13 80.9 103 42.7
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 2.1e-11 73.6 56 69.6
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 1.1e-10 71.2 46 67.4
BcaB01g04538 Brassica carinata HOM05D005836 ORTHO05D007335 3.4e-09 66.2 33 87.9
HPP92_024987 Vanilla planifolia HOM05D005836 ORTHO05D007335 1.1e-07 61.2 74 47.3


User provided reference genes

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