Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G0956 Salvia bowleyana HOM05D000350 ORTHO05D022227 3.2e-75 285.0 145 100.0
SalBow2G1481 Salvia bowleyana HOM05D000350 ORTHO05D022227 7.0e-75 283.9 145 99.3
MSTRG.694 Avicennia marina HOM05D000350 ORTHO05D000228 3.5e-18 95.5 164 44.5
Nn3g17205 Nelumbo nucifera HOM05D000350 ORTHO05D000228 1.0e-17 94.0 141 44.7
Actinidia31202 Actinidia chinensis HOM05D000350 ORTHO05D000228 5.1e-17 91.7 138 46.4
Ciclev10031757m.g Citrus clementina HOM05D000350 ORTHO05D000228 8.7e-17 90.9 166 41.6
Cpa.g.sc1815.2 Carica papaya HOM05D000350 ORTHO05D000228 3.3e-16 89.0 160 41.2
Oeu001576.1 Olea europaea HOM05D000350 ORTHO05D000228 3.3e-16 89.0 153 44.4
CSS0029405 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 1.3e-15 87.0 155 43.9
Nn4g23130 Nelumbo nucifera HOM05D000350 ORTHO05D000228 1.3e-15 87.0 159 39.6
TAR371G0739 Trochodendron aralioides HOM05D000350 ORTHO05D000228 1.3e-15 87.0 162 43.2
Thecc.03G084500 Theobroma cacao HOM05D000350 ORTHO05D000228 6.3e-15 84.7 184 39.1
Aqoxy3G00680 Aquilegia oxysepala HOM05D000350 ORTHO05D000228 3.1e-14 82.4 164 39.6
Atru.chr11.1818 Acer truncatum HOM05D000350 ORTHO05D000228 4.1e-14 82.0 152 41.4
Phvul.003G190900 Phaseolus vulgaris HOM05D000350 ORTHO05D000228 5.3e-14 81.6 177 35.0
TAR622G0441 Trochodendron aralioides HOM05D000350 ORTHO05D000228 1.2e-13 80.5 162 39.5
VMungo1215G0148 Vigna mungo HOM05D000350 ORTHO05D000228 1.2e-13 80.5 181 35.4
Lalb_Chr13g0303291 Lupinus albus HOM05D000350 ORTHO05D000228 3.4e-13 79.0 178 36.5
Atru.chr9.2274 Acer truncatum HOM05D000350 ORTHO05D000228 5.9e-13 78.2 155 40.0
Duzib068G0007 Durio zibethinus HOM05D000350 ORTHO05D000228 5.9e-13 78.2 149 38.9
COL.COLO4_00362 Corchorus olitorius HOM05D000350 ORTHO05D000228 7.7e-13 77.8 185 36.2
Oeu014029.1 Olea europaea HOM05D000350 ORTHO05D000228 7.7e-13 77.8 150 42.0
FAN13G3314 Fragaria x ananassa HOM05D000350 ORTHO05D000228 1.0e-12 77.4 188 37.2
SalBow8G5064 Salvia bowleyana HOM05D000350 ORTHO05D022227 1.0e-12 77.4 158 45.6
Glyma.01G045500 Glycine max HOM05D000350 ORTHO05D000228 2.2e-12 76.3 179 36.9
DCAR_031027 Daucus carota HOM05D000350 ORTHO05D000228 2.9e-12 75.9 166 39.8
DCAR_031028 Daucus carota HOM05D000350 ORTHO05D000228 2.9e-12 75.9 166 39.8
Manes.06G093900 Manihot esculenta HOM05D000350 ORTHO05D000228 2.9e-12 75.9 174 37.4
Oeu045408.1 Olea europaea HOM05D000350 ORTHO05D000228 2.9e-12 75.9 146 41.1
Aqoxy3G03354 Aquilegia oxysepala HOM05D000350 ORTHO05D000228 6.5e-12 74.7 152 41.4
arahy.Tifrunner.gnm1.ann1.6V3SWS Arachis hypogaea HOM05D000350 ORTHO05D000228 6.5e-12 74.7 172 35.5
arahy.Tifrunner.gnm1.ann1.Q9YRAB Arachis hypogaea HOM05D000350 ORTHO05D000228 6.5e-12 74.7 172 35.5
Cc11_g13150 Coffea canephora HOM05D000350 ORTHO05D000228 6.5e-12 74.7 165 41.2
CiPaw.05G136800 Carya illinoinensis HOM05D000350 ORTHO05D000228 8.5e-12 74.3 156 38.5
FAN08G1184 Fragaria x ananassa HOM05D000350 ORTHO05D000228 8.5e-12 74.3 188 36.7
Duzib251G0008 Durio zibethinus HOM05D000350 ORTHO05D000228 1.1e-11 73.9 166 36.1
Lj9C462T10 Lonicera japonica HOM05D000350 ORTHO05D000228 1.1e-11 73.9 179 39.1
Phvul.002G086600 Phaseolus vulgaris HOM05D000350 ORTHO05D000228 1.1e-11 73.9 181 33.7
CiPaw.11G042900 Carya illinoinensis HOM05D000350 ORTHO05D000228 1.4e-11 73.6 178 35.4
Gohir.A12G176600 Gossypium hirsutum HOM05D000350 ORTHO05D000228 1.4e-11 73.6 169 38.5
Atru.chr9.2266 Acer truncatum HOM05D000350 ORTHO05D000228 1.9e-11 73.2 132 40.9
Duzib205G1598 Durio zibethinus HOM05D000350 ORTHO05D000228 1.9e-11 73.2 160 39.4
Migut.L01307 Erythranthe guttata HOM05D000350 ORTHO05D000228 1.9e-11 73.2 122 47.5
Glyma.02G105900 Glycine max HOM05D000350 ORTHO05D000228 1.9e-11 73.2 185 34.1
Potri.011G055500 Populus trichocarpa HOM05D000350 ORTHO05D000228 1.9e-11 73.2 149 39.6
Thecc.02G350300 Theobroma cacao HOM05D000350 ORTHO05D000228 1.9e-11 73.2 158 38.0
FvH4_5g15150 Fragaria vesca HOM05D000350 ORTHO05D000228 2.5e-11 72.8 188 36.2
FAN18G1488 Fragaria x ananassa HOM05D000350 ORTHO05D000228 2.5e-11 72.8 188 36.2
Lsat_1_v5_gn_1_13200 Lactuca sativa HOM05D000350 ORTHO05D000228 2.5e-11 72.8 168 38.1
Sed0023822 Sechium edule HOM05D000350 ORTHO05D000228 3.2e-11 72.4 184 35.3
VMungo1309G1886 Vigna mungo HOM05D000350 ORTHO05D000228 3.2e-11 72.4 155 38.7
Ciclev10020275m.g Citrus clementina HOM05D000350 ORTHO05D000228 4.2e-11 72.0 163 38.0
Dinv16633 Davidia involucrata HOM05D000350 ORTHO05D000228 4.2e-11 72.0 156 37.8
FAN04G0488 Fragaria x ananassa HOM05D000350 ORTHO05D000228 4.2e-11 72.0 184 37.0
Gorai.007G036800 Gossypium raimondii HOM05D000350 ORTHO05D000228 5.5e-11 71.6 165 36.4
unitig_749.g13231 Utricularia gibba HOM05D000350 ORTHO05D000228 5.5e-11 71.6 128 43.0
VMungo1215G1479 Vigna mungo HOM05D000350 ORTHO05D000228 5.5e-11 71.6 182 34.1
Potri.004G046300 Populus trichocarpa HOM05D000350 ORTHO05D000228 7.2e-11 71.2 150 37.3
PGR044G1024 Punica granatum HOM05D000350 ORTHO05D000228 7.2e-11 71.2 138 39.9
CiPaw.12G014100 Carya illinoinensis HOM05D000350 ORTHO05D000228 9.4e-11 70.9 174 36.2
Phvul.009G188100 Phaseolus vulgaris HOM05D000350 ORTHO05D000228 9.4e-11 70.9 155 38.1
Gohir.D13G073900 Gossypium hirsutum HOM05D000350 ORTHO05D000228 1.2e-10 70.5 161 36.6
MBI05_g35458_MAGBIO Magnolia biondii HOM05D000350 ORTHO05D000228 1.6e-10 70.1 160 38.1
Manes.14G077200 Manihot esculenta HOM05D000350 ORTHO05D000228 1.6e-10 70.1 178 34.8
Lj2g0006146 Lotus japonicus HOM05D000350 ORTHO05D000228 2.1e-10 69.7 156 34.0
Cfa008997 Carpinus fangiana HOM05D000350 ORTHO05D000228 2.7e-10 69.3 152 41.4
MSTRG.9632 Avicennia marina HOM05D000350 ORTHO05D000228 3.6e-10 68.9 168 35.7
Nitab4.5_0004103g0020 Nicotiana tabacum HOM05D000350 ORTHO05D000228 3.6e-10 68.9 178 34.3
Haze_12026 Corylus avellana HOM05D000350 ORTHO05D000228 4.6e-10 68.6 173 38.7
Gorai.013G084500 Gossypium raimondii HOM05D000350 ORTHO05D000228 4.6e-10 68.6 146 37.7
Oeu060803.1 Olea europaea HOM05D000350 ORTHO05D000228 4.6e-10 68.6 151 38.4
Gorai.N023400 Gossypium raimondii HOM05D000350 ORTHO05D000228 6.1e-10 68.2 161 36.0
Sabra11G0037800 Salix brachista HOM05D000350 ORTHO05D000228 6.1e-10 68.2 149 38.9
ClCG06G016250 Citrullus lanatus HOM05D000350 ORTHO05D000228 7.9e-10 67.8 154 37.0
Duzib268G0342 Durio zibethinus HOM05D000350 ORTHO05D000228 7.9e-10 67.8 161 36.0
Gohir.D12G179300 Gossypium hirsutum HOM05D000350 ORTHO05D000228 7.9e-10 67.8 169 36.7
Lj6C789T7 Lonicera japonica HOM05D000350 ORTHO05D000228 7.9e-10 67.8 148 41.2
GSVIVG01020011001 Vitis vinifera HOM05D000350 ORTHO05D000228 1.0e-09 67.4 97 46.4
Glyma.05G027400 Glycine max HOM05D000350 ORTHO05D000228 1.8e-09 66.6 148 36.5
Gohir.A13G073700 Gossypium hirsutum HOM05D000350 ORTHO05D000228 1.8e-09 66.6 138 38.4
MSTRG.4421 Avicennia marina HOM05D000350 ORTHO05D000228 2.3e-09 66.2 171 35.1
Gohir.D13G073800 Gossypium hirsutum HOM05D000350 ORTHO05D000228 2.3e-09 66.2 147 37.4
Glyma.17G099100 Glycine max HOM05D000350 ORTHO05D000228 3.0e-09 65.9 179 33.5
Lalb_Chr10g0098181 Lupinus albus HOM05D000350 ORTHO05D000228 3.0e-09 65.9 168 36.9
Gorai.008G192400 Gossypium raimondii HOM05D000350 ORTHO05D000228 3.9e-09 65.5 169 35.5
GSVIVG01008023001 Vitis vinifera HOM05D000350 ORTHO05D000228 3.9e-09 65.5 90 47.8
Duzib248G0115 Durio zibethinus HOM05D000350 ORTHO05D000228 6.7e-09 64.7 161 33.5
Cpa.g.sc128.6 Carica papaya HOM05D000350 ORTHO05D000228 8.8e-09 64.3 160 36.9
PGR102G2484 Punica granatum HOM05D000350 ORTHO05D000228 8.8e-09 64.3 143 42.0
QL10p016556 Quercus lobata HOM05D000350 ORTHO05D000228 8.8e-09 64.3 144 38.2
DCAR_021524 Daucus carota HOM05D000350 ORTHO05D000228 1.1e-08 63.9 174 35.1
MD14G1198200 Malus domestica HOM05D000350 ORTHO05D000228 1.5e-08 63.5 169 33.1
MELO3C017168.2 Cucumis melo HOM05D000350 ORTHO05D000228 2.0e-08 63.2 171 33.9
Duzib084G1417 Durio zibethinus HOM05D000350 ORTHO05D000228 2.5e-08 62.8 188 33.0
Oeu022623.1 Olea europaea HOM05D000350 ORTHO05D000228 2.5e-08 62.8 169 33.1
Oeu047018.1 Olea europaea HOM05D000350 ORTHO05D000228 2.5e-08 62.8 138 38.4
SGA_v2.0_scaffold63G21661 Striga asiatica HOM05D000350 ORTHO05D000228 2.5e-08 62.8 127 42.5
Gohir.A13G073800 Gossypium hirsutum HOM05D000350 ORTHO05D000228 4.3e-08 62.0 157 35.0
Cfa018958 Carpinus fangiana HOM05D000350 ORTHO05D000228 5.7e-08 61.6 157 36.9
Haze_07340 Corylus avellana HOM05D000350 ORTHO05D000228 5.7e-08 61.6 157 36.9
CsaV3_1G002280 Cucumis sativus L. HOM05D000350 ORTHO05D000228 5.7e-08 61.6 151 34.4
Manes.01G187000 Manihot esculenta HOM05D000350 ORTHO05D000228 5.7e-08 61.6 139 39.6
Sed0003260 Sechium edule HOM05D000350 ORTHO05D000228 5.7e-08 61.6 164 32.9
Sed0009449 Sechium edule HOM05D000350 ORTHO05D000228 5.7e-08 61.6 141 35.5
COL.COLO4_22986 Corchorus olitorius HOM05D000350 ORTHO05D000228 7.4e-08 61.2 164 32.9
Glyma.06G193000 Glycine max HOM05D000350 ORTHO05D000228 7.4e-08 61.2 164 37.2
Glyma.04G170600 Glycine max HOM05D000350 ORTHO05D000228 9.7e-08 60.8 172 36.0
HanXRQChr16g0502851 Helianthus annuus HOM05D000350 ORTHO05D000228 9.7e-08 60.8 156 38.5
Oeu054894.1 Olea europaea HOM05D000350 ORTHO05D000228 9.7e-08 60.8 147 36.7
Hma1.2p1_0104F.1_g050010 Hydrangea macrophylla HOM05D000350 ORTHO05D000228 1.3e-07 60.5 157 35.7
Medtr4g108370 Medicago truncatula HOM05D000350 ORTHO05D000228 1.7e-07 60.1 148 37.2
BcaC08g46416 Brassica carinata HOM05D000350 ORTHO05D000228 2.2e-07 59.7 120 38.3
Prupe.1G272500 Prunus persica HOM05D000350 ORTHO05D000228 2.2e-07 59.7 174 39.1
SGA_v2.0_scaffold7G04072 Striga asiatica HOM05D000350 ORTHO05D000228 2.2e-07 59.7 144 35.4
Gohir.A07G063900 Gossypium hirsutum HOM05D000350 ORTHO05D000228 2.8e-07 59.3 149 34.2
Gohir.D07G068700 Gossypium hirsutum HOM05D000350 ORTHO05D000228 2.8e-07 59.3 149 34.2
Gorai.001G072200 Gossypium raimondii HOM05D000350 ORTHO05D000228 2.8e-07 59.3 149 34.2
HanXRQChr08g0235581 Helianthus annuus HOM05D000350 ORTHO05D000228 2.8e-07 59.3 138 33.3
Rhsim08G0156400 Rhododendron simsii HOM05D000350 ORTHO05D000228 2.8e-07 59.3 186 31.7
TPR.G34731 Trifolium pratense HOM05D000350 ORTHO05D000228 2.8e-07 59.3 144 36.8
CAN.G628.26 Capsicum annuum HOM05D000350 ORTHO05D000228 3.7e-07 58.9 173 32.9
Lalb_Chr12g0196841 Lupinus albus HOM05D000350 ORTHO05D000228 3.7e-07 58.9 165 32.7
RcHm_v2.0_Chr7g0181021 Rosa chinensis HOM05D000350 ORTHO05D000228 3.7e-07 58.9 155 34.8
TWI81G0836 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 3.7e-07 58.9 107 42.1
CSS0049991 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 4.8e-07 58.5 164 33.5
Gohir.D12G168800 Gossypium hirsutum HOM05D000350 ORTHO05D000228 4.8e-07 58.5 155 33.5
Gorai.008G181600 Gossypium raimondii HOM05D000350 ORTHO05D000228 4.8e-07 58.5 155 33.5
Psat4g053160 Pisum sativum HOM05D000350 ORTHO05D000228 6.3e-07 58.2 194 31.4
ClCG05G024370 Citrullus lanatus HOM05D000350 ORTHO05D000228 8.2e-07 57.8 134 35.8
Dinv34166 Davidia involucrata HOM05D000189 ORTHO05D000474 8.2e-07 57.8 129 45.0
Lsat_1_v5_gn_5_19421 Lactuca sativa HOM05D000350 ORTHO05D000228 8.2e-07 57.8 160 35.6
Lalb_Chr17g0340581 Lupinus albus HOM05D000350 ORTHO05D000228 8.2e-07 57.8 176 35.2
DCAR_016540 Daucus carota HOM05D000350 ORTHO05D000228 1.1e-06 57.4 149 34.9
FvH4_4g31520 Fragaria vesca HOM05D000350 ORTHO05D000228 1.1e-06 57.4 194 31.4
PSO017G3276 Papaver somniferum HOM05D000350 ORTHO05D000228 1.1e-06 57.4 187 35.3
PSO478G4552 Papaver somniferum HOM05D000350 ORTHO05D000228 1.1e-06 57.4 187 35.3
Solyc03g116320.3 Solanum lycopersicum HOM05D000350 ORTHO05D000228 1.1e-06 57.4 178 33.7
Sopen03g035250 Solanum pennellii HOM05D000350 ORTHO05D000228 1.4e-06 57.0 178 33.7
TPR.G37105 Trifolium pratense HOM05D000350 ORTHO05D000228 1.4e-06 57.0 152 32.9
Medtr5g039600 Medicago truncatula HOM05D000350 ORTHO05D000228 2.4e-06 56.2 151 32.5
FAN12G1099 Fragaria x ananassa HOM05D000350 ORTHO05D000228 3.1e-06 55.8 194 30.9
Dinv19949 Davidia involucrata HOM05D000350 ORTHO05D000228 4.1e-06 55.5 163 33.1
Gohir.A12G165700 Gossypium hirsutum HOM05D000350 ORTHO05D000228 4.1e-06 55.5 158 34.8
Lsat_1_v5_gn_4_107781 Lactuca sativa HOM05D000350 ORTHO05D000228 4.1e-06 55.5 171 34.5
Migut.D01829 Erythranthe guttata HOM05D000350 ORTHO05D000228 6.9e-06 54.7 128 34.4
Lsat_1_v5_gn_8_51760 Lactuca sativa HOM05D000350 ORTHO05D000228 6.9e-06 54.7 165 33.9
Ca_04773_v3 Cicer arietinum L. HOM05D000350 ORTHO05D000228 9.1e-06 54.3 177 33.3
Cc04_g16910 Coffea canephora HOM05D000350 ORTHO05D000228 9.1e-06 54.3 155 31.6
ECA246G5143 Erigeron canadensis HOM05D000350 ORTHO05D000228 9.1e-06 54.3 171 33.3
Lj4g0017086 Lotus japonicus HOM05D000350 ORTHO05D000228 9.1e-06 54.3 160 31.2
Prupe.5G191200 Prunus persica HOM05D000350 ORTHO05D000228 9.1e-06 54.3 111 37.8


User provided reference genes

Program Settings