Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G0815 Salvia bowleyana HOM05D007418 ORTHO05D009419 5.8e-141 504.2 256 100.0
Migut.D02561 Erythranthe guttata HOM05D007418 ORTHO05D009419 4.7e-90 335.1 219 76.7
MSTRG.20939 Avicennia marina HOM05D007418 ORTHO05D009419 4.9e-87 325.1 250 68.0
Solyc01g044490.4 Solanum lycopersicum HOM05D007418 ORTHO05D009419 3.0e-76 289.3 241 61.8
Sopen01g018620 Solanum pennellii HOM05D007418 ORTHO05D009419 6.6e-76 288.1 241 61.8
CAN.G752.2 Capsicum annuum HOM05D007418 ORTHO05D009419 1.1e-75 287.3 243 61.7
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 8.0e-74 281.2 254 58.7
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 2.0e-72 276.6 234 60.7
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 2.2e-71 273.1 255 56.5
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 6.4e-71 271.6 205 62.9
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 1.2e-69 267.3 198 65.7
SGA_v2.0_scaffold6G03369 Striga asiatica HOM05D007418 ORTHO05D009419 8.6e-68 261.2 204 68.6
Oeu023704.1 Olea europaea HOM05D007418 ORTHO05D009419 4.0e-65 252.3 164 76.2
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 2.2e-63 246.5 254 53.1
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 2.4e-62 243.0 245 49.8
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 7.1e-62 241.5 245 52.7
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 1.6e-61 240.4 218 56.4
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 2.1e-61 240.0 218 56.0
Peaxi162Scf00005g00613 Petunia axillaris HOM05D007418 ORTHO05D009419 1.3e-60 237.3 164 70.1
TAR369G1115 Trochodendron aralioides HOM05D007418 ORTHO05D009419 1.7e-60 236.9 260 51.2
ATR0737G157 Amborella trichopoda HOM05D007418 ORTHO05D009419 6.6e-60 235.0 197 56.3
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 2.1e-58 229.9 247 50.6
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 2.8e-58 229.6 193 58.0
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 8.9e-57 224.6 248 49.6
CAN.G132.16 Capsicum annuum HOM05D007418 ORTHO05D009419 8.9e-57 224.6 219 52.5
Lsat_1_v5_gn_1_67260 Lactuca sativa HOM05D007418 ORTHO05D009419 1.5e-56 223.8 190 61.1
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 3.4e-56 222.6 229 50.7
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 9.9e-56 221.1 166 66.3
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 9.9e-56 221.1 198 54.5
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 9.9e-56 221.1 198 53.0
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 1.3e-55 220.7 200 54.5
unitig_899.g15026 Utricularia gibba HOM05D007418 ORTHO05D009419 1.3e-55 220.7 145 74.5
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 2.2e-55 219.9 164 67.1
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 2.9e-55 219.5 222 49.5
MELO3C029305.2 Cucumis melo HOM05D007418 ORTHO05D009419 3.8e-55 219.2 198 55.1
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 4.9e-55 218.8 225 50.7
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 4.9e-55 218.8 198 53.0
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 8.4e-55 218.0 178 60.1
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 1.1e-54 217.6 197 55.3
CsaV3_1G041690 Cucumis sativus L. HOM05D007418 ORTHO05D009419 1.4e-54 217.2 198 54.0
Lj6g0008878 Lotus japonicus HOM05D007418 ORTHO05D009419 1.4e-54 217.2 218 49.5
ClCG03G014480 Citrullus lanatus HOM05D007418 ORTHO05D009419 1.9e-54 216.9 198 53.0
CANSAT11G2630 Cannabis sativa HOM05D007418 ORTHO05D009419 9.2e-54 214.5 198 53.5
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 1.2e-53 214.2 246 49.6
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 1.2e-53 214.2 234 49.1
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 2.1e-53 213.4 198 54.0
Glyma.04G122600 Glycine max HOM05D007418 ORTHO05D009419 2.1e-53 213.4 197 53.3
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 2.7e-53 213.0 238 47.5
RcHm_v2.0_Chr5g0083721 Rosa chinensis HOM05D007418 ORTHO05D009419 2.7e-53 213.0 198 53.5
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 6.0e-53 211.8 238 47.1
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 1.7e-52 210.3 158 63.3
Phvul.001G269400 Phaseolus vulgaris HOM05D007418 ORTHO05D009419 3.0e-52 209.5 228 46.1
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 5.1e-52 208.8 198 55.6
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 6.6e-52 208.4 197 53.3
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 6.6e-52 208.4 197 53.3
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 6.6e-52 208.4 197 53.3
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 6.6e-52 208.4 240 47.9
FvH4_3g45540 Fragaria vesca HOM05D007418 ORTHO05D009419 8.7e-52 208.0 239 48.1
Prupe.6G003800 Prunus persica HOM05D007418 ORTHO05D009419 1.1e-51 207.6 201 53.7
arahy.Tifrunner.gnm1.ann1.ZH41ZF Arachis hypogaea HOM05D007418 ORTHO05D009419 2.5e-51 206.5 197 50.3
Ca_16377_v3 Cicer arietinum L. HOM05D007418 ORTHO05D009419 2.5e-51 206.5 194 51.0
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 3.3e-51 206.1 201 50.2
Cfa019012 Carpinus fangiana HOM05D000059 ORTHO05D000528 4.3e-51 205.7 203 51.2
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 4.3e-51 205.7 206 51.5
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 7.3e-51 204.9 235 46.8
Gohir.D05G110400 Gossypium hirsutum HOM05D007418 ORTHO05D009419 9.6e-51 204.5 231 46.8
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 1.2e-50 204.1 238 47.1
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 6.2e-50 201.8 240 47.9
vmacro04241 Vaccinium macrocarpon HOM05D007418 ORTHO05D009419 6.2e-50 201.8 342 38.9
Lalb_Chr11g0075981 Lupinus albus HOM05D007418 ORTHO05D009419 1.1e-49 201.1 187 53.5
Psat5g101120 Pisum sativum HOM05D007418 ORTHO05D009419 1.8e-49 200.3 194 51.5
VMungo0464G0510 Vigna mungo HOM05D007418 ORTHO05D009419 3.1e-49 199.5 233 45.1
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 4.0e-49 199.1 198 50.0
TPR.G19319 Trifolium pratense HOM05D007418 ORTHO05D009419 6.9e-49 198.4 232 46.1
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 1.2e-48 197.6 241 43.6
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 2.6e-48 196.4 198 50.0
Medtr3g083530 Medicago truncatula HOM05D007418 ORTHO05D009419 2.6e-48 196.4 216 46.3
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 4.4e-48 195.7 187 50.8
arahy.Tifrunner.gnm1.ann1.WR82LC Arachis hypogaea HOM05D007418 ORTHO05D009419 1.7e-47 193.7 261 41.8
Nitab4.5_0004630g0080 Nicotiana tabacum HOM05D007418 ORTHO05D009419 2.9e-47 193.0 180 59.4
FAN11G0209 Fragaria x ananassa HOM05D007418 ORTHO05D009419 4.9e-47 192.2 239 46.4
FAN25G3222 Fragaria x ananassa HOM05D007418 ORTHO05D009419 8.4e-47 191.4 268 42.9
FAN21G2280 Fragaria x ananassa HOM05D007418 ORTHO05D009419 1.9e-46 190.3 239 46.4
Atru.chr3.2092 Acer truncatum HOM05D007418 ORTHO05D009419 2.4e-46 189.9 226 47.8
MBI04_g37007_MAGBIO Magnolia biondii HOM05D007418 ORTHO05D009419 1.9e-43 180.3 238 42.9
CiPaw.13G176700 Carya illinoinensis HOM05D007418 ORTHO05D009419 4.3e-43 179.1 200 48.5
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 1.6e-42 177.2 163 54.0
Sed0010168 Sechium edule HOM05D007418 ORTHO05D009419 3.6e-42 176.0 166 53.6
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 3.6e-42 176.0 201 43.8
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 8.1e-42 174.9 195 45.1
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 9.9e-40 167.9 242 39.3
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 6.4e-39 165.2 164 52.4
Haze_07392 Corylus avellana HOM05D007418 ORTHO05D009419 2.4e-38 163.3 321 33.0
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 4.2e-38 162.5 135 58.5
Nitab4.5_0002351g0010 Nicotiana tabacum HOM05D007418 ORTHO05D009419 9.3e-38 161.4 181 53.0
Sc06g0004180 Simmondsia chinensis HOM05D007418 ORTHO05D009419 1.9e-35 153.7 123 57.7
Cre06.g263050 Chlamydomonas reinhardtii HOM05D007418 ORTHO05D009419 1.1e-22 111.3 195 31.8
Nitab4.5_0004630g0090 Nicotiana tabacum HOM05D007418 ORTHO05D009419 9.3e-22 108.2 77 67.5
Rhsim13G0232600 Rhododendron simsii HOM05D007418 ORTHO05D009419 1.9e-19 100.5 75 62.7
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 4.3e-19 99.4 187 32.1
QL04p006930 Quercus lobata HOM05D007418 ORTHO05D009419 5.7e-19 99.0 92 54.3
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 2.8e-18 96.7 183 29.5
MD03G1004200 Malus domestica HOM05D007418 ORTHO05D009419 1.1e-17 94.7 235 29.4
RcHm_v2.0_Chr3g0460491 Rosa chinensis HOM05D005727 ORTHO05D007324 1.1e-17 94.7 189 31.7
MD12G1188200 Malus domestica HOM05D005727 ORTHO05D007324 6.9e-17 92.0 217 27.6
FAN05G4930 Fragaria x ananassa HOM05D005727 ORTHO05D007324 9.0e-17 91.7 205 31.2
FAN09G3145 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.2e-16 91.3 190 31.1
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 1.5e-16 90.9 183 27.9
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 2.0e-16 90.5 185 30.3
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 2.0e-16 90.5 214 27.1
FAN05G2146 Fragaria x ananassa HOM05D005727 ORTHO05D007324 2.0e-16 90.5 190 31.6
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 2.6e-16 90.1 183 28.4
FvH4_6g09890 Fragaria vesca HOM05D005727 ORTHO05D007324 2.6e-16 90.1 205 30.7
FAN14G2915 Fragaria x ananassa HOM05D005727 ORTHO05D007324 2.6e-16 90.1 205 30.7
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 3.4e-16 89.7 220 30.0
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 3.4e-16 89.7 182 26.9
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 3.4e-16 89.7 183 28.4
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 4.5e-16 89.4 198 27.8
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 7.7e-16 88.6 213 27.2
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 7.7e-16 88.6 187 28.9
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 7.7e-16 88.6 237 27.0
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 1.0e-15 88.2 217 26.7
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 1.0e-15 88.2 185 27.6
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 1.3e-15 87.8 216 28.2
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 1.3e-15 87.8 188 27.7
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 1.7e-15 87.4 213 27.7
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 2.2e-15 87.0 211 26.1
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 2.9e-15 86.7 214 26.6
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 2.9e-15 86.7 183 28.4
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 2.9e-15 86.7 182 26.9
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 2.9e-15 86.7 213 25.4
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 2.9e-15 86.7 213 25.4
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 3.8e-15 86.3 213 25.4
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 3.8e-15 86.3 185 27.6
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 3.8e-15 86.3 182 27.5
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 5.0e-15 85.9 205 27.3
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 6.5e-15 85.5 191 26.2
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 6.5e-15 85.5 185 27.0
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 8.5e-15 85.1 184 28.8
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 1.4e-14 84.3 203 25.6
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 1.9e-14 84.0 186 26.9
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 1.9e-14 84.0 182 27.5
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 1.9e-14 84.0 182 27.5
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 1.9e-14 84.0 215 25.6
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 1.9e-14 84.0 183 26.8
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 1.9e-14 84.0 184 27.7
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 3.2e-14 83.2 182 26.4
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 3.2e-14 83.2 199 26.6
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 3.2e-14 83.2 185 30.8
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 4.2e-14 82.8 213 25.8
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 5.5e-14 82.4 200 25.0
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 2.1e-13 80.5 195 26.7
FAN05G2443 Fragaria x ananassa HOM05D005727 ORTHO05D007324 2.1e-13 80.5 223 28.7
FAN16G1782 Fragaria x ananassa HOM05D007418 ORTHO05D009419 2.1e-13 80.5 119 43.7
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 3.6e-13 79.7 213 27.7
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 3.0e-12 76.6 182 24.7
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 8.8e-12 75.1 206 24.3
arahy.Tifrunner.gnm1.ann1.CT9SCB Arachis hypogaea HOM05D005727 ORTHO05D007324 1.5e-11 74.3 211 23.7
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 1.5e-11 74.3 208 24.5
SHI31291 Sapria himalayana HOM05D007418 ORTHO05D009419 1.3e-10 71.2 121 32.2
TPR.G6905 Trifolium pratense HOM05D009845 ORTHO05D010624 2.4e-09 67.0 60 55.0
Ca_16215_v3 Cicer arietinum L. HOM05D009845 ORTHO05D010624 1.2e-08 64.7 76 46.1
Medtr3g078610 Medicago truncatula HOM05D009845 ORTHO05D010624 7.7e-08 62.0 54 55.6
Psat5g113560 Pisum sativum HOM05D009845 ORTHO05D010624 1.3e-07 61.2 53 52.8
Phvul.009G182700 Phaseolus vulgaris HOM05D009845 ORTHO05D010624 1.7e-07 60.8 58 48.3
Lj1g0026374 Lotus japonicus HOM05D009845 ORTHO05D010624 2.2e-07 60.5 53 52.8
Glyma.04G178200 Glycine max HOM05D009845 ORTHO05D010624 1.9e-06 57.4 58 46.6
MD04G1174600 Malus domestica HOM05D005727 ORTHO05D007324 1.9e-06 57.4 119 25.2
Glyma.04G178000 Glycine max HOM05D009845 ORTHO05D010624 2.5e-06 57.0 58 44.8
Lalb_Chr23g0273071 Lupinus albus HOM05D009845 ORTHO05D010624 5.5e-06 55.8 45 53.3


User provided reference genes

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