Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 0.0e+00 1776.5 933 100.0
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 0.0e+00 1736.9 1013 91.8
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 0.0e+00 1104.7 945 65.3
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 3.8e-307 1058.1 949 63.4
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 7.2e-306 1053.9 941 62.3
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 7.3e-274 947.6 954 56.3
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 4.7e-273 944.9 950 56.0
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 9.2e-269 930.6 979 54.7
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 4.6e-268 928.3 964 55.2
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 3.6e-265 918.7 982 55.9
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 6.8e-264 914.4 850 58.9
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.2e-263 913.7 927 56.2
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 4.4e-263 911.8 952 56.1
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 7.6e-263 911.0 985 54.3
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 2.2e-262 909.4 952 55.1
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 2.1e-260 902.9 952 55.0
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 8.9e-256 887.5 955 53.9
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 2.9e-254 882.5 957 54.1
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 3.8e-254 882.1 928 55.0
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 5.1e-251 871.7 935 54.1
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 1.1e-248 864.0 933 53.4
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 2.4e-248 862.8 956 52.1
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 6.4e-246 854.7 956 52.9
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 8.4e-246 854.4 951 52.3
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 2.4e-245 852.8 955 52.4
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 5.4e-245 851.7 949 53.0
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 5.4e-245 851.7 1055 49.5
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 5.4e-245 851.7 949 52.2
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 7.9e-244 847.8 957 51.9
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.0e-243 847.4 960 50.5
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 1.5e-242 843.6 960 52.6
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 4.3e-242 842.0 949 51.8
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 7.3e-242 841.3 959 51.5
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 9.6e-242 840.9 934 52.6
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 2.1e-241 839.7 966 51.6
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 2.1e-241 839.7 915 52.9
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 6.2e-241 838.2 955 52.4
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 2.6e-239 832.8 837 56.3
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 9.9e-239 830.9 938 50.6
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 3.8e-238 828.9 951 51.9
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 5.4e-237 825.1 941 51.8
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 3.5e-236 822.4 947 50.7
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 7.9e-236 821.2 955 50.4
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.3e-235 819.7 932 51.7
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 3.0e-235 819.3 852 54.6
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 1.9e-234 816.6 932 51.6
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 4.3e-234 815.5 956 51.7
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.8e-233 812.8 942 51.6
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 8.1e-233 811.2 959 50.9
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 8.1e-233 811.2 958 50.8
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 1.4e-232 810.4 803 58.0
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 1.4e-232 810.4 949 51.9
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 4.0e-232 808.9 932 51.4
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 2.0e-231 806.6 960 50.4
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 7.6e-231 804.7 917 51.9
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 2.2e-230 803.1 964 49.1
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 2.9e-230 802.7 953 50.4
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.9e-229 800.0 928 51.2
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 2.5e-229 799.7 955 49.4
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 5.5e-229 798.5 962 50.3
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 9.3e-229 797.7 909 52.0
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 1.6e-228 797.0 948 50.0
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 1.6e-228 797.0 954 49.3
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 6.0e-228 795.0 951 50.1
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 2.3e-227 793.1 950 49.3
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 3.0e-227 792.7 955 49.0
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 8.7e-227 791.2 921 51.2
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 2.5e-226 789.6 961 49.1
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 9.6e-226 787.7 941 51.0
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 9.6e-226 787.7 955 49.7
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.6e-225 786.9 955 48.9
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 4.8e-225 785.4 952 50.3
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 6.2e-225 785.0 953 48.4
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 1.8e-224 783.5 941 48.8
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 1.5e-223 780.4 953 48.3
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 1.3e-222 777.3 958 49.6
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 1.9e-221 773.5 939 50.1
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 7.2e-221 771.5 955 49.2
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.7e-220 769.6 931 48.9
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 4.6e-220 768.8 964 49.4
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 1.3e-219 767.3 950 48.9
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 1.3e-219 767.3 914 50.1
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 3.9e-219 765.8 1004 47.2
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 4.8e-217 758.8 953 48.4
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 8.2e-217 758.1 958 49.3
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 4.1e-216 755.7 997 47.7
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 4.6e-212 742.3 966 47.9
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 5.1e-211 738.8 918 48.6
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 6.7e-211 738.4 957 48.1
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 1.1e-210 737.6 918 48.5
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 1.3e-209 734.2 958 48.4
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.3e-209 734.2 899 48.8
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 8.2e-209 731.5 947 47.2
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 1.8e-208 730.3 952 47.4
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 4.5e-207 725.7 830 52.3
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 2.9e-206 723.0 684 58.9
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 1.1e-205 721.1 951 47.8
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 1.4e-205 720.7 946 47.0
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 4.7e-204 715.7 948 46.9
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 2.0e-202 710.3 901 47.9
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 7.4e-202 708.4 956 45.1
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 9.7e-202 708.0 894 48.3
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 1.7e-201 707.2 912 47.0
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 5.0e-198 695.7 812 50.1
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 4.2e-197 692.6 936 46.8
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 1.5e-194 684.1 954 45.7
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 1.7e-190 670.6 946 47.0
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 2.9e-190 669.8 945 45.4
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 1.2e-188 664.5 862 47.6
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 3.0e-187 659.8 826 48.3
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 4.0e-187 659.4 950 44.5
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 5.0e-182 642.5 892 45.1
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 2.1e-180 637.1 970 42.9
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 2.1e-180 637.1 817 47.6
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 3.6e-180 636.3 567 60.7
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 1.8e-179 634.0 888 44.8
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 8.3e-177 625.2 923 43.1
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 2.9e-174 616.7 952 42.3
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 8.6e-174 615.1 933 42.6
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 8.0e-164 582.0 909 39.8
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 6.0e-159 565.8 914 42.3
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 8.6e-158 562.0 933 40.3
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 9.8e-154 548.5 569 54.7
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 3.2e-152 543.5 957 39.7
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 1.1e-149 535.0 921 40.1
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 2.1e-143 514.2 452 62.2
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 9.6e-141 505.4 838 39.5
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 1.7e-137 494.6 1002 35.8
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 2.4e-128 464.2 550 49.1
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 1.7e-126 458.0 824 37.1
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 6.2e-124 449.5 634 45.3
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 5.5e-120 436.4 585 45.1
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 3.3e-117 427.2 940 34.0
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 1.2e-114 418.7 619 43.8
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 6.5e-97 359.8 886 32.5
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 8.2e-84 316.2 725 32.7
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 1.4e-83 315.5 802 32.4
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 2.4e-83 314.7 440 44.8
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 8.5e-81 306.2 441 44.2
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 2.4e-67 261.5 316 48.4
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.6e-63 248.8 280 53.2
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 6.6e-57 226.9 253 52.6
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 2.1e-47 195.3 169 66.9
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 6.2e-47 193.7 342 39.8
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 5.4e-43 180.6 195 56.4
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 5.1e-33 147.5 194 45.4
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 6.6e-33 147.1 138 57.2
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 8.9e-30 136.7 202 42.1
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 8.9e-30 136.7 202 42.1
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 2.7e-26 125.2 173 43.9
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 2.5e-24 118.6 179 41.9
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 2.5e-24 118.6 179 41.9
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 5.8e-21 107.5 175 42.9
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 1.3e-17 96.3 114 46.5
Oeu011694.1 Olea europaea HOM05D004054 ORTHO05D049449 2.3e-17 95.5 97 57.7
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 8.7e-17 93.6 133 46.6
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 1.4e-14 86.3 177 34.5
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 1.4e-14 86.3 60 68.3
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 3.1e-14 85.1 348 26.4
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 1.5e-13 82.8 197 33.0
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 7.6e-13 80.5 101 48.5
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 2.9e-12 78.6 178 33.1
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 6.4e-12 77.4 69 56.5
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 1.6e-10 72.8 62 59.7
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 6.0e-10 70.9 69 56.5
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-07 63.2 206 22.8
Lsat_1_v5_gn_5_60100 Lactuca sativa HOM05D004054 ORTHO05D036438 2.8e-07 62.0 93 44.1
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 6.2e-07 60.8 37 75.7
Dinv34201 Davidia involucrata HOM05D004054 ORTHO05D004945 3.1e-06 58.5 42 66.7
MBI09_g47007_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 3.1e-06 58.5 94 40.4
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 4.0e-06 58.2 47 53.2


User provided reference genes

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