Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G0593 Salvia bowleyana HOM05D001970 ORTHO05D004069 1.1e-26 122.5 59 100.0
SalBow2G2990 Salvia bowleyana HOM05D001970 ORTHO05D004069 2.6e-20 101.3 59 86.4
SalBow2G3109 Salvia bowleyana HOM05D001970 ORTHO05D004069 1.4e-13 79.0 54 66.7
CSS0034239 Camellia sinensis var. sinensis HOM05D001970 ORTHO05D004069 5.5e-10 67.0 55 45.5
CSS0036297 Camellia sinensis var. sinensis HOM05D001970 ORTHO05D004069 5.5e-10 67.0 57 43.9
CAN.G305.52 Capsicum annuum HOM05D001970 ORTHO05D004069 7.2e-10 66.6 53 50.9
Cfa015695 Carpinus fangiana HOM05D001970 ORTHO05D004069 7.2e-10 66.6 54 53.7
Lj4g0017975 Lotus japonicus HOM05D001970 ORTHO05D004069 7.2e-10 66.6 50 56.0
Sopen05g031820 Solanum pennellii HOM05D001970 ORTHO05D004069 7.2e-10 66.6 55 49.1
Haze_00827 Corylus avellana HOM05D001970 ORTHO05D004069 9.4e-10 66.2 54 53.7
Solyc05g053310.3 Solanum lycopersicum HOM05D001970 ORTHO05D004069 9.4e-10 66.2 55 47.3
Cpa.g.sc146.67 Carica papaya HOM05D001970 ORTHO05D004069 1.2e-09 65.9 54 50.0
Manes.11G051025 Manihot esculenta HOM05D001970 ORTHO05D004069 1.2e-09 65.9 54 53.7
Sabra10G0028300 Salix brachista HOM05D001970 ORTHO05D004069 1.6e-09 65.5 54 51.9
unitig_26.g10618 Utricularia gibba HOM05D001970 ORTHO05D004069 1.6e-09 65.5 54 48.1
arahy.Tifrunner.gnm1.ann1.WPV56H Arachis hypogaea HOM05D001970 ORTHO05D004069 2.7e-09 64.7 54 48.1
Lj4g0011707 Lotus japonicus HOM05D001970 ORTHO05D004069 2.7e-09 64.7 50 52.0
CSS0044499 Camellia sinensis var. sinensis HOM05D001970 ORTHO05D004069 3.6e-09 64.3 55 43.6
Migut.N00021 Erythranthe guttata HOM05D001970 ORTHO05D004069 4.7e-09 63.9 58 44.8
Nitab4.5_0000745g0210 Nicotiana tabacum HOM05D001970 ORTHO05D004069 4.7e-09 63.9 57 43.9
arahy.Tifrunner.gnm1.ann1.KB2WLH Arachis hypogaea HOM05D001970 ORTHO05D004069 7.9e-09 63.2 54 46.3
Hma1.2p1_2065F.1_g313010 Hydrangea macrophylla HOM05D001970 ORTHO05D004069 7.9e-09 63.2 54 46.3
Psat5g255320 Pisum sativum HOM05D001970 ORTHO05D004069 7.9e-09 63.2 50 48.0
Potri.010G037500 Populus trichocarpa HOM05D001970 ORTHO05D004069 7.9e-09 63.2 54 48.1
Sp3g15420 Schrenkiella parvula HOM05D001970 ORTHO05D004069 7.9e-09 63.2 54 51.9
PGSC0003DMG400027205 Solanum tuberosum HOM05D001970 ORTHO05D004069 7.9e-09 63.2 55 45.5
VMungo1309G1592 Vigna mungo HOM05D001970 ORTHO05D004069 1.0e-08 62.8 50 52.0
GSVIVG01034915001 Vitis vinifera HOM05D001970 ORTHO05D004069 1.0e-08 62.8 54 46.3
GSVIVG01034933001 Vitis vinifera HOM05D001970 ORTHO05D004069 1.0e-08 62.8 54 46.3
GSVIVG01034936001 Vitis vinifera HOM05D001970 ORTHO05D004069 1.0e-08 62.8 54 46.3
Actinidia31583 Actinidia chinensis HOM05D001970 ORTHO05D004069 1.4e-08 62.4 54 46.3
Duzib151G0565 Durio zibethinus HOM05D001970 ORTHO05D004069 1.4e-08 62.4 54 46.3
Eucgr.B02212 Eucalyptus grandis HOM05D001970 ORTHO05D004069 1.4e-08 62.4 54 46.3
Lalb_Chr07g0181871 Lupinus albus HOM05D001970 ORTHO05D004069 1.4e-08 62.4 54 46.3
Oeu052154.2 Olea europaea HOM05D001970 ORTHO05D004069 1.4e-08 62.4 54 44.4
SGA_v2.0_scaffold227G43218 Striga asiatica HOM05D001970 ORTHO05D004069 1.4e-08 62.4 54 46.3
ClCG05G006740 Citrullus lanatus HOM05D001970 ORTHO05D004069 1.8e-08 62.0 58 43.1
SGA_v2.0_scaffold19G08903 Striga asiatica HOM05D001970 ORTHO05D004069 1.8e-08 62.0 53 50.9
Zm00001eb357750 Zea mays HOM05D001970 ORTHO05D004069 1.8e-08 62.0 54 44.4
Ca_09315_v3 Cicer arietinum L. HOM05D001970 ORTHO05D004069 2.3e-08 61.6 50 48.0
Nitab4.5_0008312g0070 Nicotiana tabacum HOM05D001970 ORTHO05D004069 2.3e-08 61.6 57 42.1
PGR031G3476 Punica granatum HOM05D001970 ORTHO05D004069 2.3e-08 61.6 54 46.3
vmacro07978 Vaccinium macrocarpon HOM05D001970 ORTHO05D004069 2.3e-08 61.6 54 42.6
GSVIVG01017635001 Vitis vinifera HOM05D001970 ORTHO05D004069 2.3e-08 61.6 58 41.4
GSVIVG01034937001 Vitis vinifera HOM05D001970 ORTHO05D004069 2.3e-08 61.6 58 41.4
BcaB04g20854 Brassica carinata HOM05D001970 ORTHO05D004069 3.0e-08 61.2 54 48.1
BcaC09g48682 Brassica carinata HOM05D001970 ORTHO05D004069 3.0e-08 61.2 54 48.1
C01p46990 Brassica napus HOM05D001970 ORTHO05D004069 3.0e-08 61.2 54 48.1
BolC1t04667H Brassica oleracea HOM05D001970 ORTHO05D004069 3.0e-08 61.2 54 48.1
Cc03_g00440 Coffea canephora HOM05D001970 ORTHO05D004069 3.0e-08 61.2 54 48.1
Dinv44243 Davidia involucrata HOM05D001970 ORTHO05D004069 3.0e-08 61.2 54 46.3
Gohir.A10G069000 Gossypium hirsutum HOM05D001970 ORTHO05D004069 3.0e-08 61.2 54 44.4
Gohir.D10G082400 Gossypium hirsutum HOM05D001970 ORTHO05D004069 3.0e-08 61.2 54 44.4
Gorai.011G089300 Gossypium raimondii HOM05D001970 ORTHO05D004069 3.0e-08 61.2 54 44.4
MD13G1147600 Malus domestica HOM05D001970 ORTHO05D004069 3.0e-08 61.2 54 48.1
MSTRG.21751 Avicennia marina HOM05D001970 ORTHO05D004069 3.9e-08 60.8 57 42.1
A01p37060 Brassica napus HOM05D001970 ORTHO05D004069 3.9e-08 60.8 54 48.1
Ciclev10006242m.g Citrus clementina HOM05D001970 ORTHO05D004069 3.9e-08 60.8 54 50.0
Lalb_Chr13g0298751 Lupinus albus HOM05D001970 ORTHO05D004069 3.9e-08 60.8 50 50.0
Thecc.05G289900 Theobroma cacao HOM05D001970 ORTHO05D004069 3.9e-08 60.8 54 46.3
TPR.G12625 Trifolium pratense HOM05D001970 ORTHO05D004069 3.9e-08 60.8 50 50.0
ATR0693G141 Amborella trichopoda HOM05D001970 ORTHO05D004069 5.1e-08 60.5 54 46.3
CARHR092480 Cardamine hirsuta HOM05D001970 ORTHO05D004069 5.1e-08 60.5 54 48.1
Cfa015694 Carpinus fangiana HOM05D001970 ORTHO05D004069 5.1e-08 60.5 54 50.0
Potri.010G151000 Populus trichocarpa HOM05D001970 ORTHO05D004069 5.1e-08 60.5 55 47.3
RcHm_v2.0_Chr1g0339351 Rosa chinensis HOM05D001970 ORTHO05D004069 5.1e-08 60.5 54 48.1
A01p37110 Brassica napus HOM05D001970 ORTHO05D004069 6.7e-08 60.1 54 46.3
C01p47010 Brassica napus HOM05D001970 ORTHO05D004069 6.7e-08 60.1 54 46.3
BolC1t04669H Brassica oleracea HOM05D001970 ORTHO05D004069 6.7e-08 60.1 54 46.3
BraA01t03770Z Brassica rapa HOM05D001970 ORTHO05D004069 6.7e-08 60.1 54 46.3
Glyma.06G084000 Glycine max HOM05D001970 ORTHO05D004069 6.7e-08 60.1 50 48.0
HanXRQChr16g0519591 Helianthus annuus HOM05D001970 ORTHO05D004069 6.7e-08 60.1 54 44.4
Manes.04G118100 Manihot esculenta HOM05D001970 ORTHO05D004069 6.7e-08 60.1 50 52.0
Peaxi162Scf00164g00521 Petunia axillaris HOM05D001970 ORTHO05D004069 6.7e-08 60.1 57 40.4
Potri.010G037200 Populus trichocarpa HOM05D001970 ORTHO05D004069 6.7e-08 60.1 54 46.3
Sed0005247 Sechium edule HOM05D001970 ORTHO05D004069 6.7e-08 60.1 58 41.4
Actinidia18483 Actinidia chinensis HOM05D001970 ORTHO05D004069 8.8e-08 59.7 54 42.6
Ah.04g157230 Amaranthus hybridus HOM05D001970 ORTHO05D004069 8.8e-08 59.7 54 48.1
BcaC09g48679 Brassica carinata HOM05D001970 ORTHO05D004069 8.8e-08 59.7 54 46.3
Carub.0003s1697 Capsella rubella HOM05D001970 ORTHO05D004069 8.8e-08 59.7 54 46.3
Eucgr.B02218 Eucalyptus grandis HOM05D001970 ORTHO05D004069 8.8e-08 59.7 50 50.0
Glyma.04G082200 Glycine max HOM05D001970 ORTHO05D004069 8.8e-08 59.7 50 50.0
Nn3g21834 Nelumbo nucifera HOM05D001970 ORTHO05D004069 8.8e-08 59.7 50 50.0
Peaxi162Scf00164g00613 Petunia axillaris HOM05D001970 ORTHO05D004069 8.8e-08 59.7 57 43.9
QL04p008488 Quercus lobata HOM05D001970 ORTHO05D004069 8.8e-08 59.7 53 49.1
SalBow2G0974 Salvia bowleyana HOM05D001970 ORTHO05D004069 8.8e-08 59.7 57 43.9
Thecc.04G307800 Theobroma cacao HOM05D001970 ORTHO05D004069 8.8e-08 59.7 54 46.3
Migut.N00023 Erythranthe guttata HOM05D001970 ORTHO05D004069 1.1e-07 59.3 57 42.1
Eucgr.K03419 Eucalyptus grandis HOM05D001970 ORTHO05D004069 1.1e-07 59.3 56 44.6
Eucgr.L02572 Eucalyptus grandis HOM05D001970 ORTHO05D004069 1.1e-07 59.3 56 44.6
MD16G1147500 Malus domestica HOM05D001970 ORTHO05D004069 1.1e-07 59.3 50 52.0
Os01g0516600 Oryza sativa ssp. japonica HOM05D001970 ORTHO05D004069 1.1e-07 59.3 54 44.4
Psat4g019000 Pisum sativum HOM05D001970 ORTHO05D004069 1.1e-07 59.3 50 46.0
Rhsim04G0243300 Rhododendron simsii HOM05D001970 ORTHO05D004069 1.1e-07 59.3 54 40.7
THA.LOC104820283 Tarenaya hassleriana HOM05D001970 ORTHO05D004069 1.1e-07 59.3 58 43.1
Atru.chr4.3101 Acer truncatum HOM05D001970 ORTHO05D004069 1.5e-07 58.9 57 45.6
C01p46960 Brassica napus HOM05D001970 ORTHO05D004069 1.5e-07 58.9 54 46.3
ClCG01G008350 Citrullus lanatus HOM05D001970 ORTHO05D004069 1.5e-07 58.9 57 43.9
FAN07G1061 Fragaria x ananassa HOM05D001970 ORTHO05D004069 1.5e-07 58.9 54 46.3
Prupe.1G111200 Prunus persica HOM05D001970 ORTHO05D004069 1.5e-07 58.9 54 48.1
SalBow5G5314 Salvia bowleyana HOM05D001970 ORTHO05D004069 1.5e-07 58.9 57 42.1
Atru.chr4.3100 Acer truncatum HOM05D001970 ORTHO05D004069 2.0e-07 58.5 57 43.9
Aqoxy5G02736 Aquilegia oxysepala HOM05D001970 ORTHO05D004069 2.0e-07 58.5 54 46.3
AT3G17210 Arabidopsis thaliana HOM05D001970 ORTHO05D004069 2.0e-07 58.5 54 46.3
AUR62005910 Chenopodium quinoa HOM05D001970 ORTHO05D004069 2.0e-07 58.5 54 48.1
ClCG05G006690 Citrullus lanatus HOM05D001970 ORTHO05D004069 2.0e-07 58.5 57 43.9
Eucgr.B02215 Eucalyptus grandis HOM05D001970 ORTHO05D004069 2.0e-07 58.5 54 46.3
HPP92_015244 Vanilla planifolia HOM05D001970 ORTHO05D004069 2.0e-07 58.5 54 44.4
BraA01t03767Z Brassica rapa HOM05D001970 ORTHO05D004069 2.6e-07 58.2 54 46.3
CiPaw.02G071900 Carya illinoinensis HOM05D001970 ORTHO05D004069 2.6e-07 58.2 54 46.3
FvH4_4g20800 Fragaria vesca HOM05D001970 ORTHO05D004069 2.6e-07 58.2 54 46.3
Peaxi162Scf00164g00522 Petunia axillaris HOM05D001970 ORTHO05D004069 2.6e-07 58.2 57 43.9
Phvul.009G108000 Phaseolus vulgaris HOM05D001970 ORTHO05D004069 2.6e-07 58.2 50 50.0
RcHm_v2.0_Chr4g0426271 Rosa chinensis HOM05D001970 ORTHO05D004069 2.6e-07 58.2 54 46.3
Glyma.06G083900 Glycine max HOM05D001970 ORTHO05D004069 3.3e-07 57.8 50 44.0
Peaxi162Scf00164g00612 Petunia axillaris HOM05D001970 ORTHO05D004069 3.3e-07 57.8 57 42.1
Peaxi162Scf00164g00711 Petunia axillaris HOM05D001970 ORTHO05D004069 3.3e-07 57.8 57 42.1
EL10Ac3g05094 Beta vulgaris HOM05D001970 ORTHO05D004069 4.4e-07 57.4 54 46.3
MELO3C006735.2 Cucumis melo HOM05D001970 ORTHO05D004069 4.4e-07 57.4 54 42.6
CsaV3_3G015370 Cucumis sativus L. HOM05D001970 ORTHO05D004069 4.4e-07 57.4 54 42.6
Eucgr.B02214 Eucalyptus grandis HOM05D001970 ORTHO05D004069 4.4e-07 57.4 58 37.9
Potri.010G150900 Populus trichocarpa HOM05D001970 ORTHO05D004069 4.4e-07 57.4 54 46.3
TPR.G12678 Trifolium pratense HOM05D001970 ORTHO05D004069 4.4e-07 57.4 50 46.0
Atru.chr4.3099 Acer truncatum HOM05D001970 ORTHO05D004069 5.7e-07 57.0 57 42.1
AL3G30240 Arabidopsis lyrata HOM05D001970 ORTHO05D004069 5.7e-07 57.0 54 44.4
CANSAT78G2049 Cannabis sativa HOM05D001970 ORTHO05D004069 5.7e-07 57.0 54 44.4
Medtr4g124920 Medicago truncatula HOM05D001970 ORTHO05D004069 5.7e-07 57.0 50 46.0
PGR031G1418 Punica granatum HOM05D001970 ORTHO05D004069 5.7e-07 57.0 54 44.4
Hund21091 Selenicereus undatus HOM05D001970 ORTHO05D004069 5.7e-07 57.0 58 43.1
Sc19g0000220 Simmondsia chinensis HOM05D001970 ORTHO05D004069 5.7e-07 57.0 54 42.6
Aa31LG8G4180 Aethionema arabicum HOM05D000747 ORTHO05D004807 7.4e-07 56.6 54 44.4
COL.COLO4_34553 Corchorus olitorius HOM05D001970 ORTHO05D004069 7.4e-07 56.6 54 40.7
Eucgr.B02219 Eucalyptus grandis HOM05D001970 ORTHO05D004069 7.4e-07 56.6 54 42.6
Sed0006681 Sechium edule HOM05D001970 ORTHO05D004069 7.4e-07 56.6 54 42.6
SEGI_08307 Sequoiadendron giganteum HOM05D001970 ORTHO05D004069 7.4e-07 56.6 56 39.3
VMungo1309G0293 Vigna mungo HOM05D001970 ORTHO05D004069 7.4e-07 56.6 50 50.0
AUR62028155 Chenopodium quinoa HOM05D001970 ORTHO05D004069 9.7e-07 56.2 54 46.3
Migut.N00022 Erythranthe guttata HOM05D001970 ORTHO05D004069 9.7e-07 56.2 50 44.0
MBI19_g32692_MAGBIO Magnolia biondii HOM05D003039 ORTHO05D009478 9.7e-07 56.2 57 35.1
TAR362G0012 Trochodendron aralioides HOM05D001970 ORTHO05D004069 9.7e-07 56.2 50 44.0
CiPaw.01G133200 Carya illinoinensis HOM05D001970 ORTHO05D004069 1.7e-06 55.5 54 40.7
Eucgr.K03413 Eucalyptus grandis HOM05D001970 ORTHO05D004069 1.7e-06 55.5 56 41.1
AUR62005911 Chenopodium quinoa HOM05D001970 ORTHO05D004069 2.2e-06 55.1 53 45.3
ECA234G1379 Erigeron canadensis HOM05D001970 ORTHO05D004069 2.2e-06 55.1 54 40.7
SalBow5G1240 Salvia bowleyana HOM05D001970 ORTHO05D004069 2.8e-06 54.7 54 38.9
SEGI_17677 Sequoiadendron giganteum HOM05D001970 ORTHO05D004069 2.8e-06 54.7 56 39.3
Eucgr.K03418 Eucalyptus grandis HOM05D001970 ORTHO05D004069 3.7e-06 54.3 58 39.7
Lsat_1_v5_gn_4_46140 Lactuca sativa HOM05D001970 ORTHO05D004069 3.7e-06 54.3 54 37.0
TWI73G0733 Tripterygium wilfordii HOM05D001970 ORTHO05D004069 4.8e-06 53.9 50 46.0
Eucgr.B03989 Eucalyptus grandis HOM05D001970 ORTHO05D004069 8.2e-06 53.1 48 45.8
QL06p013371 Quercus lobata HOM05D001970 ORTHO05D004069 8.2e-06 53.1 54 38.9


User provided reference genes

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