Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G0478 Salvia bowleyana HOM05D008308 ORTHO05D008113 7.3e-90 334.0 178 100.0
SalBow2G0620 Salvia bowleyana HOM05D008308 ORTHO05D363388 1.6e-41 173.3 92 97.8
SalBow7G1810 Salvia bowleyana HOM05D008308 ORTHO05D363605 9.0e-40 167.5 92 94.6
SalBow1G5601 Salvia bowleyana HOM05D008308 ORTHO05D360563 1.5e-39 166.8 90 96.7
SalBow1G8291 Salvia bowleyana HOM05D008308 ORTHO05D352580 4.5e-39 165.2 90 95.6
SalBow6G5212 Salvia bowleyana HOM05D008308 ORTHO05D356245 4.5e-39 165.2 90 95.6
SalBow5G1544 Salvia bowleyana HOM05D008308 ORTHO05D352533 7.6e-39 164.5 92 93.5
SalBow8G4387 Salvia bowleyana HOM05D008308 ORTHO05D356253 7.6e-39 164.5 92 94.6
SalBow8G4064 Salvia bowleyana HOM05D008308 ORTHO05D358803 4.9e-38 161.8 91 93.4
SalBow7G0084 Salvia bowleyana HOM05D008308 ORTHO05D356941 1.9e-37 159.8 90 93.3
SalBow7G3785 Salvia bowleyana HOM05D008308 ORTHO05D352729 3.2e-37 159.1 90 93.3
SalBow7G2154 Salvia bowleyana HOM05D008308 ORTHO05D353046 1.2e-36 157.1 91 91.2
SalBow6G3560 Salvia bowleyana HOM05D008308 ORTHO05D359941 1.8e-35 153.3 90 90.0
SalBow1G4229 Salvia bowleyana HOM05D008308 ORTHO05D000377 7.6e-31 137.9 92 80.4
SalBow5G0230 Salvia bowleyana HOM05D008308 ORTHO05D352662 3.8e-30 135.6 79 88.6
SalBow8G1539 Salvia bowleyana HOM05D008308 ORTHO05D353359 1.2e-28 130.6 92 76.1
SalBow7G4836 Salvia bowleyana HOM05D008308 ORTHO05D357276 2.1e-28 129.8 92 76.1
SalBow8G0507 Salvia bowleyana HOM05D008308 ORTHO05D357709 8.8e-27 124.4 92 71.7
SalBow6G4506 Salvia bowleyana HOM05D008308 ORTHO05D355237 4.8e-25 118.6 85 75.3
SalBow7G0825 Salvia bowleyana HOM05D008308 ORTHO05D350642 1.1e-24 117.5 92 69.6
SalBow7G1012 Salvia bowleyana HOM05D008308 ORTHO05D362677 2.4e-24 116.3 90 71.1
SalBow3G4396 Salvia bowleyana HOM05D008308 ORTHO05D361931 7.7e-23 111.3 100 64.0
unitig_27.g25076 Utricularia gibba HOM05D006417 ORTHO05D008113 1.7e-17 93.6 58 89.7
SalBow2G2995 Salvia bowleyana HOM05D006417 ORTHO05D008113 2.8e-17 92.8 58 89.7
SGA_v2.0_scaffold37G14829 Striga asiatica HOM05D006417 ORTHO05D008113 4.8e-17 92.0 54 96.3
SalBow1G4690 Salvia bowleyana HOM05D008308 ORTHO05D351387 6.3e-17 91.7 92 56.5
TAR626G0232 Trochodendron aralioides HOM05D006417 ORTHO05D008113 6.3e-17 91.7 58 87.9
Ciclev10026914m.g Citrus clementina HOM05D006417 ORTHO05D008113 8.2e-17 91.3 58 87.9
Glyma.08G206000 Glycine max HOM05D006417 ORTHO05D008113 1.1e-16 90.9 58 86.2
Hma1.2p1_2039F.1_g312170 Hydrangea macrophylla HOM05D006417 ORTHO05D008113 1.1e-16 90.9 58 86.2
AL1G27360 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 1.4e-16 90.5 58 86.2
AT1G15270 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 1.4e-16 90.5 58 86.2
Carub.0001s1503 Capsella rubella HOM05D006417 ORTHO05D008113 1.4e-16 90.5 58 86.2
Hund06616 Selenicereus undatus HOM05D006417 ORTHO05D008113 1.4e-16 90.5 58 86.2
C08p17070 Brassica napus HOM05D006417 ORTHO05D008113 1.8e-16 90.1 87 63.2
BolC8t49333H Brassica oleracea HOM05D006417 ORTHO05D008113 1.8e-16 90.1 87 63.2
CANSAT56G0242 Cannabis sativa HOM05D006417 ORTHO05D008113 1.8e-16 90.1 58 86.2
Migut.D01026 Erythranthe guttata HOM05D006417 ORTHO05D008113 1.8e-16 90.1 58 87.9
Glyma.07G005600 Glycine max HOM05D006417 ORTHO05D008113 1.8e-16 90.1 58 86.2
Prupe.3G069900 Prunus persica HOM05D006417 ORTHO05D008113 2.4e-16 89.7 58 84.5
ATR0724G030 Amborella trichopoda HOM05D006417 ORTHO05D008113 3.1e-16 89.4 58 86.2
BcaC05g25455 Brassica carinata HOM05D006417 ORTHO05D008113 3.1e-16 89.4 58 86.2
BcaC05g25459 Brassica carinata HOM05D006417 ORTHO05D008113 3.1e-16 89.4 58 86.2
Sed0004760 Sechium edule HOM05D006417 ORTHO05D008113 3.1e-16 89.4 58 84.5
Gohir.A09G082600 Gossypium hirsutum HOM05D006417 ORTHO05D008113 4.1e-16 89.0 58 86.2
MD17G1194100 Malus domestica HOM05D006417 ORTHO05D008113 4.1e-16 89.0 58 84.5
Phvul.010G150000 Phaseolus vulgaris HOM05D006417 ORTHO05D008113 4.1e-16 89.0 58 82.8
Sed0026778 Sechium edule HOM05D006417 ORTHO05D008113 4.1e-16 89.0 58 84.5
BcaB03g13069 Brassica carinata HOM05D006417 ORTHO05D008113 6.9e-16 88.2 58 84.5
Thecc.06G089800 Theobroma cacao HOM05D006417 ORTHO05D008113 6.9e-16 88.2 58 84.5
Gohir.D09G082500 Gossypium hirsutum HOM05D006417 ORTHO05D008113 9.1e-16 87.8 58 84.5
Medtr4g012800 Medicago truncatula HOM05D006417 ORTHO05D008113 9.1e-16 87.8 58 82.8
Psat7g250440 Pisum sativum HOM05D006417 ORTHO05D008113 9.1e-16 87.8 58 82.8
Aqoxy7G01686 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 1.2e-15 87.4 58 82.8
BcaC07g38776 Brassica carinata HOM05D006417 ORTHO05D008113 1.2e-15 87.4 58 82.8
BcaC07g41515 Brassica carinata HOM05D006417 ORTHO05D008113 1.2e-15 87.4 58 82.8
A08p31670 Brassica napus HOM05D006417 ORTHO05D008113 1.2e-15 87.4 58 82.8
A09p61510 Brassica napus HOM05D006417 ORTHO05D008113 1.2e-15 87.4 58 82.8
CARHR015790 Cardamine hirsuta HOM05D006417 ORTHO05D008113 1.2e-15 87.4 58 82.8
Migut.I00879 Erythranthe guttata HOM05D006417 ORTHO05D008113 1.2e-15 87.4 54 88.9
Lj3g0004039 Lotus japonicus HOM05D006417 ORTHO05D008113 1.2e-15 87.4 58 82.8
Lalb_Chr01g0012721 Lupinus albus HOM05D006417 ORTHO05D008113 1.2e-15 87.4 58 82.8
Nn2g11755 Nelumbo nucifera HOM05D006417 ORTHO05D008113 1.2e-15 87.4 56 85.7
SalBow8G2769 Salvia bowleyana HOM05D008308 ORTHO05D362757 1.2e-15 87.4 92 57.6
Sp1g13580 Schrenkiella parvula HOM05D006417 ORTHO05D008113 1.2e-15 87.4 58 82.8
Lj5A59T64 Lonicera japonica HOM05D006417 ORTHO05D008113 1.5e-15 87.0 58 82.8
MBI06_g06678_MAGBIO Magnolia biondii HOM05D006417 ORTHO05D008113 1.5e-15 87.0 58 81.0
Aqoxy7G03790 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 2.6e-15 86.3 58 81.0
HanXRQChr12g0376701 Helianthus annuus HOM05D006417 ORTHO05D008113 2.6e-15 86.3 58 87.9
Potri.001G181800 Populus trichocarpa HOM05D006417 ORTHO05D008113 2.6e-15 86.3 58 82.8
Aa31LG4G200 Aethionema arabicum HOM05D006417 ORTHO05D008113 4.5e-15 85.5 58 81.0
ClCG05G003220 Citrullus lanatus HOM05D006417 ORTHO05D008113 4.5e-15 85.5 58 79.3
CsaV3_3G010850 Cucumis sativus L. HOM05D006417 ORTHO05D008113 4.5e-15 85.5 58 79.3
HanXRQChr04g0096081 Helianthus annuus HOM05D006417 ORTHO05D008113 4.5e-15 85.5 58 86.2
RcHm_v2.0_Chr2g0106421 Rosa chinensis HOM05D006417 ORTHO05D008113 4.5e-15 85.5 58 82.8
ClCG02G009660 Citrullus lanatus HOM05D006417 ORTHO05D008113 5.9e-15 85.1 58 79.3
Cc04_g03270 Coffea canephora HOM05D006417 ORTHO05D008113 5.9e-15 85.1 63 81.0
COL.COLO4_30395 Corchorus olitorius HOM05D006417 ORTHO05D008113 5.9e-15 85.1 58 82.8
DCAR_023056 Daucus carota HOM05D006417 ORTHO05D008113 5.9e-15 85.1 55 87.3
FAN02G0035 Fragaria x ananassa HOM05D006417 ORTHO05D008113 5.9e-15 85.1 58 81.0
RcHm_v2.0_Chr2g0138111 Rosa chinensis HOM05D006417 ORTHO05D008113 5.9e-15 85.1 58 81.0
SalBow2G3177 Salvia bowleyana HOM05D008308 ORTHO05D358398 5.9e-15 85.1 91 56.0
Glyma.20G047300 Glycine max HOM05D006417 ORTHO05D008113 7.7e-15 84.7 58 81.0
Lsat_1_v5_gn_5_130340 Lactuca sativa HOM05D006417 ORTHO05D008113 1.0e-14 84.3 58 84.5
FAN05G1876 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.3e-14 84.0 58 79.3
FAN14G4157 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.3e-14 84.0 58 79.3
FAN09G4522 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.7e-14 83.6 58 79.3
Manes.04G124600 Manihot esculenta HOM05D006417 ORTHO05D008113 1.7e-14 83.6 67 76.1
Atru.chr1.3302 Acer truncatum HOM05D006417 ORTHO05D008113 2.2e-14 83.2 58 79.3
BcaNung06587 Brassica carinata HOM05D006417 ORTHO05D008113 2.2e-14 83.2 66 71.2
BolC5t30076H Brassica oleracea HOM05D006417 ORTHO05D008113 2.9e-14 82.8 55 85.5
Oeu063955.1 Olea europaea HOM05D006417 ORTHO05D008113 2.9e-14 82.8 58 86.2
CSS0028003 Camellia sinensis var. sinensis HOM05D006417 ORTHO05D008113 3.8e-14 82.4 56 82.1
CiPaw.02G150500 Carya illinoinensis HOM05D006417 ORTHO05D008113 3.8e-14 82.4 58 82.8
ECA247G1523 Erigeron canadensis HOM05D001142 ORTHO05D004628 3.8e-14 82.4 63 81.0
HPP92_003724 Vanilla planifolia HOM05D002497 ORTHO05D002697 3.8e-14 82.4 63 73.0
SalBow4G1546 Salvia bowleyana HOM05D008308 ORTHO05D362807 5.0e-14 82.0 85 54.1
FAN19G1924 Fragaria x ananassa HOM05D006417 ORTHO05D008113 6.5e-14 81.6 54 85.2
Glyma.14G136351 Glycine max HOM05D006417 ORTHO05D008113 6.5e-14 81.6 53 84.9
Haze_16401 Corylus avellana HOM05D006417 ORTHO05D008113 8.5e-14 81.3 58 82.8
FvH4_1g16510 Fragaria vesca HOM05D006417 ORTHO05D008113 8.5e-14 81.3 54 85.2
A06p11260 Brassica napus HOM05D006417 ORTHO05D008113 1.1e-13 80.9 55 81.8
C08p45090 Brassica napus HOM05D006417 ORTHO05D008113 1.1e-13 80.9 55 81.8
BolC8t52055H Brassica oleracea HOM05D006417 ORTHO05D008113 1.1e-13 80.9 55 81.8
BraA06t24306Z Brassica rapa HOM05D006417 ORTHO05D008113 1.1e-13 80.9 55 81.8
BraA09t41524Z Brassica rapa HOM05D006417 ORTHO05D008113 1.1e-13 80.9 55 81.8
Sc12g0009320 Simmondsia chinensis HOM05D006417 ORTHO05D008113 1.1e-13 80.9 58 79.3
EL10Ac9g22008 Beta vulgaris HOM05D006417 ORTHO05D008113 1.4e-13 80.5 58 77.6
Pp3c23_11500 Physcomitrium patens HOM05D006417 ORTHO05D008113 1.4e-13 80.5 63 73.0
Dinv38039 Davidia involucrata HOM05D006417 ORTHO05D008113 1.9e-13 80.1 58 79.3
Gorai.006G098200 Gossypium raimondii HOM05D006417 ORTHO05D008113 1.9e-13 80.1 68 72.1
FAN26G3442 Fragaria x ananassa HOM05D006417 ORTHO05D008113 3.2e-13 79.3 58 81.0
Cpa.g.sc41.8 Carica papaya HOM05D006417 ORTHO05D008113 5.5e-13 78.6 64 71.9
CiPaw.01G238100 Carya illinoinensis HOM05D006417 ORTHO05D008113 5.5e-13 78.6 58 79.3
C05p50430 Brassica napus HOM05D006417 ORTHO05D008113 7.2e-13 78.2 58 75.9
Lj3g0012949 Lotus japonicus HOM05D006417 ORTHO05D008113 7.2e-13 78.2 59 78.0
Pp3c24_10010 Physcomitrium patens HOM05D006417 ORTHO05D008113 9.4e-13 77.8 63 71.4
SalBow4G3156 Salvia bowleyana HOM05D008308 ORTHO05D354739 9.4e-13 77.8 39 97.4
SalBow7G0131 Salvia bowleyana HOM05D000195 ORTHO05D000248 9.4e-13 77.8 39 97.4
Eucgr.J02983 Eucalyptus grandis HOM05D006417 ORTHO05D008113 1.2e-12 77.4 53 83.0
Peaxi162Scf00034g00611 Petunia axillaris HOM05D006417 ORTHO05D008113 1.2e-12 77.4 58 79.3
AT3G16040 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 1.6e-12 77.0 58 75.9
arahy.Tifrunner.gnm1.ann1.6441EL Arachis hypogaea HOM05D006417 ORTHO05D008113 1.6e-12 77.0 83 60.2
PGSC0003DMG400007579 Solanum tuberosum HOM05D006417 ORTHO05D008113 2.1e-12 76.6 58 79.3
Solyc12g043160.3 Solanum lycopersicum HOM05D006417 ORTHO05D008113 2.7e-12 76.3 58 79.3
Zm00001eb225700 Zea mays HOM05D006417 ORTHO05D008113 2.7e-12 76.3 56 82.1
Aa31LG8G3190 Aethionema arabicum HOM05D006417 ORTHO05D008113 3.6e-12 75.9 58 74.1
AL3G28690 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 3.6e-12 75.9 58 74.1
AL810U10020 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 3.6e-12 75.9 58 74.1
Thhalv10022282m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 3.6e-12 75.9 58 74.1
SalBow5G3868 Salvia bowleyana HOM05D008308 ORTHO05D350234 8.0e-12 74.7 87 50.6
Carub.0003s1577 Capsella rubella HOM05D006417 ORTHO05D008113 1.0e-11 74.3 58 72.4
Thhalv10009202m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 1.0e-11 74.3 86 58.1
CARHR091200 Cardamine hirsuta HOM05D006417 ORTHO05D008113 1.8e-11 73.6 58 74.1
Lsat_1_v5_gn_1_35180 Lactuca sativa HOM05D006417 ORTHO05D008113 2.3e-11 73.2 49 87.8
SalBow7G3236 Salvia bowleyana HOM05D008308 ORTHO05D363126 2.3e-11 73.2 89 51.7
Sp3g14390 Schrenkiella parvula HOM05D006417 ORTHO05D008113 3.0e-11 72.8 58 70.7
GSVIVG01017091001 Vitis vinifera HOM05D006417 ORTHO05D008113 3.9e-11 72.4 58 74.1
AagrBONN_evm.TU.Sc2ySwM_117.2290 Anthoceros agrestis HOM05D006417 ORTHO05D008113 8.8e-11 71.2 58 70.7
DCAR_007563 Daucus carota HOM05D006417 ORTHO05D008113 1.1e-10 70.9 58 74.1
DCAR_026325 Daucus carota HOM05D006417 ORTHO05D008113 1.1e-10 70.9 58 74.1
A05p33430 Brassica napus HOM05D006417 ORTHO05D008113 2.0e-10 70.1 53 73.6
Mapoly0091s0070 Marchantia polymorpha HOM05D006417 ORTHO05D008113 2.0e-10 70.1 58 70.7
BcaC05g28917 Brassica carinata HOM05D006417 ORTHO05D008113 7.4e-10 68.2 67 64.2
CAN.G144.3 Capsicum annuum HOM05D006417 ORTHO05D008113 7.4e-10 68.2 53 79.2
SalBow5G4803 Salvia bowleyana HOM05D008308 ORTHO05D359851 2.2e-09 66.6 82 46.3
DCAR_002649 Daucus carota HOM05D006417 ORTHO05D008113 2.8e-09 66.2 53 75.5
SalBow5G3823 Salvia bowleyana HOM05D008308 ORTHO05D358754 2.8e-09 66.2 37 94.6
SalBow8G2070 Salvia bowleyana HOM05D002722 ORTHO05D003076 2.4e-08 63.2 31 96.8
ClCG11G012700 Citrullus lanatus HOM05D006417 ORTHO05D008113 3.1e-08 62.8 51 72.5
SalBow1G0851 Salvia bowleyana HOM05D050555 ORTHO05D360635 2.0e-07 60.1 30 100.0
CAN.G710.59 Capsicum annuum HOM05D006417 ORTHO05D115303 2.9e-06 56.2 43 74.4
SalBow2G3563 Salvia bowleyana HOM05D008308 ORTHO05D357151 2.9e-06 56.2 44 54.5
SalBow3G0959 Salvia bowleyana HOM05D008308 ORTHO05D359098 3.8e-06 55.8 39 69.2
SalBow7G2588 Salvia bowleyana HOM05D008308 ORTHO05D353391 5.0e-06 55.5 72 43.1


User provided reference genes

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