Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 5.9e-311 1070.5 721 100.0
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 4.5e-98 363.2 671 46.8
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 7.3e-88 329.3 683 40.4
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 1.3e-84 318.5 660 35.9
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.4e-83 315.1 722 39.5
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.3e-81 308.5 693 43.4
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 3.0e-81 307.4 706 42.4
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 1.6e-79 301.6 476 46.0
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.6e-79 301.6 476 47.3
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 4.0e-78 297.0 714 41.2
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 1.5e-77 295.0 527 37.6
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 1.7e-76 291.6 465 46.9
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 3.7e-76 290.4 460 41.1
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 7.8e-74 282.7 688 48.1
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 5.6e-72 276.6 655 41.8
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.2e-71 275.4 465 45.6
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 8.1e-71 272.7 584 49.0
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 9.9e-69 265.8 663 41.3
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 1.7e-68 265.0 464 44.4
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 3.7e-68 263.8 685 42.2
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 1.1e-67 262.3 467 43.9
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 2.1e-66 258.1 665 46.0
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 2.7e-66 257.7 634 37.2
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 7.8e-66 256.1 670 38.5
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 3.9e-65 253.8 568 46.3
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 1.9e-64 251.5 717 38.4
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 3.3e-64 250.8 531 39.0
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 3.3e-64 250.8 704 41.1
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 5.6e-64 250.0 511 41.7
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 2.6e-61 241.1 726 40.5
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 5.8e-61 240.0 565 46.7
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 5.8e-61 240.0 503 34.0
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 7.6e-61 239.6 428 36.7
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 1.1e-59 235.7 711 43.7
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 5.4e-59 233.4 495 32.9
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 9.2e-59 232.6 452 35.4
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 2.1e-58 231.5 512 39.5
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 2.7e-58 231.1 659 38.2
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 2.7e-58 231.1 709 44.1
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 7.8e-58 229.6 506 40.3
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 3.0e-57 227.6 495 33.3
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 6.6e-57 226.5 495 40.2
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.9e-56 224.9 650 32.3
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 7.3e-56 223.0 633 43.3
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 1.2e-55 222.2 521 36.1
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 1.2e-55 222.2 464 39.2
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 2.8e-55 221.1 659 41.6
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 9.0e-54 216.1 669 44.4
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 1.7e-52 211.8 507 40.4
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 2.2e-52 211.5 495 36.8
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 2.9e-52 211.1 683 44.1
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 2.7e-50 204.5 334 39.5
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 4.6e-50 203.8 427 40.5
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 6.0e-50 203.4 721 44.7
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 1.3e-49 202.2 694 33.6
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 3.0e-49 201.1 757 32.6
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 5.1e-49 200.3 643 44.2
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.9e-48 198.4 676 32.7
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 7.3e-48 196.4 460 40.0
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 9.6e-48 196.1 663 39.8
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 2.8e-47 194.5 668 44.3
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 4.8e-47 193.7 582 36.4
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 8.1e-47 193.0 667 44.4
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 8.1e-47 193.0 667 44.4
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 1.1e-46 192.6 644 34.2
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 1.8e-46 191.8 528 36.0
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 1.8e-46 191.8 668 43.4
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 3.1e-46 191.0 515 32.2
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 5.3e-46 190.3 688 43.5
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.5e-45 188.7 720 37.4
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 4.5e-45 187.2 659 40.8
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 2.2e-44 184.9 489 31.7
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 2.9e-44 184.5 412 42.7
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 3.8e-44 184.1 581 34.4
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 8.4e-44 183.0 587 46.2
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 1.4e-43 182.2 467 37.0
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 2.4e-43 181.4 511 32.9
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 5.4e-43 180.3 474 38.0
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 1.9e-40 171.8 470 35.7
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 3.3e-40 171.0 516 34.7
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 1.3e-39 169.1 694 34.6
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 1.6e-39 168.7 470 29.8
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 1.6e-39 168.7 499 33.5
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 3.7e-39 167.5 510 28.8
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 1.1e-38 166.0 662 38.5
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 3.1e-38 164.5 470 28.5
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 4.0e-38 164.1 665 35.9
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 9.0e-38 162.9 679 30.3
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 5.8e-37 160.2 515 31.8
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 9.9e-37 159.5 427 29.3
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 2.2e-36 158.3 523 32.5
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 2.2e-36 158.3 523 32.5
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 2.2e-36 158.3 691 30.8
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 3.8e-36 157.5 636 39.5
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 2.4e-35 154.8 580 27.8
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 3.2e-35 154.5 452 30.5
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 4.2e-35 154.1 409 31.3
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 4.6e-34 150.6 640 41.7
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 1.8e-33 148.7 666 40.4
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.8e-33 148.7 666 40.2
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 3.0e-33 147.9 512 28.5
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 5.6e-32 143.7 625 28.6
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.3e-31 142.5 226 38.9
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 1.6e-31 142.1 662 41.2
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 1.6e-31 142.1 428 28.5
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 3.7e-31 141.0 327 43.7
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 1.4e-30 139.0 532 26.3
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 3.4e-29 134.4 730 41.2
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 7.6e-29 133.3 378 37.3
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 1.7e-28 132.1 636 35.5
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 3.8e-28 131.0 665 37.6
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 4.9e-28 130.6 487 31.2
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 6.5e-28 130.2 527 31.1
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 2.5e-27 128.3 368 29.9
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 3.2e-27 127.9 427 31.9
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 5.5e-27 127.1 640 39.8
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 1.2e-26 125.9 454 36.6
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 1.3e-25 122.5 717 35.4
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 2.3e-25 121.7 535 31.8
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 2.5e-24 118.2 696 34.9
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 1.3e-23 115.9 431 34.8
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 1.3e-23 115.9 738 24.0
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 4.1e-22 110.9 465 33.3
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 3.4e-21 107.8 507 29.2
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 3.8e-20 104.4 115 49.6
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.1e-19 102.8 152 38.8
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 1.4e-19 102.4 456 32.0
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 5.5e-19 100.5 719 34.9
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 9.3e-19 99.8 257 32.3
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 2.3e-17 95.1 384 31.8
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 3.9e-17 94.4 158 36.7
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 5.1e-17 94.0 528 28.0
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 5.1e-17 94.0 464 25.0
Cpa.g.sc1188.1 Carica papaya HOM05D004642 ORTHO05D005466 6.7e-17 93.6 309 50.2
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 1.5e-16 92.4 142 38.7
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 4.3e-16 90.9 403 33.0
BolC1t04793H Brassica oleracea HOM05D004642 ORTHO05D005466 3.7e-15 87.8 346 27.7
MD09G1213400 Malus domestica HOM05D004642 ORTHO05D005466 3.7e-15 87.8 127 43.3
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 3.7e-15 87.8 418 24.2
Thhalv10023042m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 5.3e-14 84.0 239 27.2
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 6.9e-14 83.6 543 22.8
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 1.2e-13 82.8 129 41.9
BraA01t03868Z Brassica rapa HOM05D004642 ORTHO05D005466 5.9e-13 80.5 352 25.3
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 5.9e-13 80.5 303 36.0
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.3e-12 79.3 530 29.6
COL.COLO4_36913 Corchorus olitorius HOM05D004642 ORTHO05D005466 7.9e-10 70.1 81 42.0
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.4e-09 69.3 437 24.0
BolC1t04796H Brassica oleracea HOM05D004642 ORTHO05D005466 1.8e-09 68.9 165 33.9
Oeu063962.1 Olea europaea HOM05D004642 ORTHO05D005466 8.2e-07 60.1 198 30.3


User provided reference genes

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