Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.1e-161 573.5 348 100.0
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.1e-161 573.5 348 100.0
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 4.1e-89 332.4 383 57.4
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.8e-84 317.0 367 61.0
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 4.4e-83 312.4 384 54.9
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 9.3e-73 278.1 378 52.4
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 1.1e-70 271.2 387 51.2
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 2.4e-68 263.5 379 52.2
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 2.0e-67 260.4 361 49.9
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 4.4e-67 259.2 377 48.5
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 3.8e-66 256.1 382 50.5
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 3.8e-66 256.1 382 51.0
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 6.4e-66 255.4 373 49.3
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 4.2e-65 252.7 372 48.1
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 4.2e-65 252.7 372 48.1
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 5.4e-65 252.3 382 50.5
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.2e-64 251.1 367 50.4
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.1e-64 250.4 368 44.8
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 3.0e-63 246.5 362 51.9
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 4.3e-62 242.7 364 53.0
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 1.3e-61 241.1 351 47.9
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 2.1e-61 240.4 372 47.8
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 2.8e-61 240.0 368 48.4
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 6.2e-61 238.8 368 46.2
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 8.1e-61 238.4 369 49.6
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 5.3e-60 235.7 357 44.8
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 1.2e-59 234.6 401 46.1
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 5.8e-59 232.3 373 49.1
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 3.8e-58 229.6 380 48.4
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 6.0e-56 222.2 392 46.7
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 6.7e-55 218.8 379 48.5
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 8.7e-55 218.4 397 42.3
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 2.5e-54 216.9 384 44.0
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 2.5e-54 216.9 384 44.0
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 5.6e-54 215.7 379 45.6
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 1.4e-52 211.1 380 44.2
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 3.1e-52 209.9 372 50.0
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 6.9e-52 208.8 389 41.9
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 6.9e-52 208.8 355 48.7
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 2.0e-51 207.2 382 44.2
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 2.0e-51 207.2 380 41.8
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 3.4e-51 206.5 387 43.4
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 4.5e-51 206.1 389 44.2
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 5.8e-51 205.7 365 39.7
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 7.6e-51 205.3 389 44.5
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 1.7e-50 204.1 387 41.6
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 3.8e-50 203.0 392 38.5
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 6.5e-50 202.2 387 44.2
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.1e-49 201.4 397 44.8
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 3.2e-49 199.9 397 43.6
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 3.2e-49 199.9 397 40.8
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 5.5e-49 199.1 368 40.2
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 5.5e-49 199.1 368 40.2
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 7.1e-49 198.7 393 44.8
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.2e-48 198.0 387 43.4
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.2e-48 198.0 401 41.1
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 2.1e-48 197.2 395 44.6
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 2.1e-48 197.2 394 40.4
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 3.5e-48 196.4 398 42.5
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 3.5e-48 196.4 387 43.2
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 4.6e-48 196.1 387 43.2
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 6.0e-48 195.7 386 44.6
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 6.0e-48 195.7 394 42.4
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 2.3e-47 193.7 385 43.4
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 3.9e-47 193.0 385 41.6
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 6.7e-47 192.2 385 37.4
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 8.7e-47 191.8 392 42.3
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 1.1e-46 191.4 384 43.5
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 1.5e-46 191.0 348 44.0
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 1.5e-46 191.0 383 41.5
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 1.9e-46 190.7 388 42.3
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 9.6e-46 188.3 390 39.5
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 9.6e-46 188.3 387 42.1
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 2.1e-45 187.2 381 43.3
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 2.1e-45 187.2 387 42.4
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 2.8e-45 186.8 327 45.6
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 3.1e-44 183.3 406 38.2
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 6.9e-44 182.2 393 40.5
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 1.5e-43 181.0 385 40.0
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 2.0e-43 180.6 388 41.8
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 3.4e-43 179.9 360 44.4
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 4.5e-43 179.5 367 43.1
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 7.6e-43 178.7 331 39.9
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 1.0e-42 178.3 369 36.9
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 1.7e-42 177.6 383 42.6
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 2.2e-42 177.2 298 41.3
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 3.8e-42 176.4 377 40.6
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 5.0e-42 176.0 403 39.7
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 6.5e-42 175.6 299 40.5
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 1.1e-41 174.9 386 42.5
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 1.4e-41 174.5 297 44.8
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 5.5e-41 172.6 346 41.6
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.6e-40 171.0 346 42.2
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 4.6e-40 169.5 385 41.3
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 6.1e-40 169.1 388 39.2
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 6.1e-40 169.1 373 38.9
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 1.3e-39 167.9 377 41.9
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.3e-39 167.9 346 41.9
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 1.1e-38 164.9 351 36.5
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 1.5e-38 164.5 369 41.5
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 2.5e-38 163.7 265 41.5
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 2.5e-38 163.7 358 40.8
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 9.7e-38 161.8 369 41.7
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 1.4e-36 157.9 278 49.6
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 2.2e-34 150.6 371 40.4
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 2.5e-33 147.1 369 36.6
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 7.2e-33 145.6 337 38.0
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 9.4e-33 145.2 340 39.4
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.6e-32 144.4 397 31.7
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.6e-32 143.3 315 40.3
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 1.4e-31 141.4 366 36.3
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 1.1e-30 138.3 307 42.3
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.3e-29 134.8 369 33.3
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.3e-29 134.8 371 35.3
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 4.8e-29 132.9 384 32.3
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 8.2e-29 132.1 383 37.6
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.8e-28 131.0 370 37.6
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 2.4e-28 130.6 367 31.3
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 7.7e-27 125.6 335 37.9
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 2.2e-26 124.0 202 50.0
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 3.8e-26 123.2 376 32.2
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 6.5e-26 122.5 324 36.1
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.1e-25 121.7 375 32.5
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.0e-23 115.2 372 31.7
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 1.4e-23 114.8 178 48.9
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 9.7e-22 108.6 134 61.9
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.1e-20 105.1 330 32.4
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 2.4e-20 104.0 164 55.5
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 3.1e-20 103.6 219 46.1
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 4.1e-20 103.2 375 30.1
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 7.0e-20 102.4 322 35.4
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 3.8e-18 96.7 369 28.7
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 4.2e-17 93.2 292 32.2
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 7.2e-17 92.4 297 37.0
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 1.6e-16 91.3 297 36.7
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 3.6e-16 90.1 383 30.0
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 4.7e-16 89.7 355 31.3
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 3.0e-15 87.0 285 30.5
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 1.2e-14 85.1 285 30.2
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 2.0e-14 84.3 366 28.1
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 4.4e-14 83.2 311 32.5
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 6.3e-13 79.3 291 34.0
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 8.2e-13 79.0 293 30.4
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 8.2e-13 79.0 354 28.2
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.4e-12 78.2 321 29.0
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 2.4e-12 77.4 290 33.8
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 2.5e-09 67.4 293 28.0
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 2.5e-09 67.4 293 28.0
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 8.0e-08 62.4 292 27.7
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 8.0e-08 62.4 303 25.4
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 7.5e-06 55.8 130 33.8


User provided reference genes

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