Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G0248 Salvia bowleyana HOM05D007863 ORTHO05D009265 6.6e-79 297.4 155 100.0
SalBow8G1578 Salvia bowleyana HOM05D006207 ORTHO05D007868 8.4e-26 120.9 98 68.4
Migut.J00099 Erythranthe guttata HOM05D006207 ORTHO05D007868 2.9e-18 95.9 96 53.1
MSTRG.5544 Avicennia marina HOM05D006207 ORTHO05D007868 3.2e-17 92.4 78 60.3
Oeu057638.1 Olea europaea HOM05D006207 ORTHO05D007868 2.7e-16 89.4 97 50.5
Nitab4.5_0000230g0180 Nicotiana tabacum HOM05D006207 ORTHO05D007868 7.9e-16 87.8 79 55.7
Nitab4.5_0015157g0010 Nicotiana tabacum HOM05D006207 ORTHO05D007868 2.3e-15 86.3 79 54.4
CAN.G967.4 Capsicum annuum HOM05D006207 ORTHO05D007868 5.1e-15 85.1 78 55.1
Cc06_g00770 Coffea canephora HOM05D006207 ORTHO05D002478 1.9e-14 83.2 79 50.6
Oeu038722.1 Olea europaea HOM05D006207 ORTHO05D007868 1.9e-14 83.2 79 55.7
Peaxi162Scf00744g00339 Petunia axillaris HOM05D006207 ORTHO05D007868 7.4e-14 81.3 80 52.5
Sopen09g008460 Solanum pennellii HOM05D006207 ORTHO05D007868 7.4e-14 81.3 78 52.6
PGSC0003DMG400017108 Solanum tuberosum HOM05D006207 ORTHO05D007868 7.4e-14 81.3 78 52.6
TWI53G1221 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 2.0e-11 73.2 79 46.8
CSS0029336 Camellia sinensis var. sinensis HOM05D006207 ORTHO05D007868 3.4e-11 72.4 82 47.6
Nitab4.5_0001764g0040 Nicotiana tabacum HOM05D007863 ORTHO05D009265 7.7e-11 71.2 54 75.9
Nitab4.5_0010254g0050 Nicotiana tabacum HOM05D007863 ORTHO05D009265 7.7e-11 71.2 44 84.1
Migut.I00793 Erythranthe guttata HOM05D007863 ORTHO05D009265 1.7e-10 70.1 67 64.2
Lj3g0024527 Lotus japonicus HOM05D006207 ORTHO05D007868 1.7e-10 70.1 78 47.4
Solyc03g116510.1 Solanum lycopersicum HOM05D007863 ORTHO05D009265 1.7e-10 70.1 44 81.8
Sopen03g035400 Solanum pennellii HOM05D007863 ORTHO05D009265 1.7e-10 70.1 44 81.8
CAN.G407.102 Capsicum annuum HOM05D007863 ORTHO05D009265 2.2e-10 69.7 100 45.0
Lj2C67T4 Lonicera japonica HOM05D006207 ORTHO05D007868 2.2e-10 69.7 84 50.0
Dinv35401 Davidia involucrata HOM05D006207 ORTHO05D007868 6.5e-10 68.2 82 46.3
FAN05G0465 Fragaria x ananassa HOM05D007863 ORTHO05D009265 6.5e-10 68.2 69 59.4
FAN09G3905 Fragaria x ananassa HOM05D007863 ORTHO05D009265 8.5e-10 67.8 72 56.9
TPR.G5270 Trifolium pratense HOM05D006207 ORTHO05D007868 8.5e-10 67.8 78 44.9
FvH4_6g30170 Fragaria vesca HOM05D007863 ORTHO05D009265 1.1e-09 67.4 69 59.4
FAN14G0247 Fragaria x ananassa HOM05D007863 ORTHO05D009265 1.1e-09 67.4 69 59.4
arahy.Tifrunner.gnm1.ann1.S95MPE Arachis hypogaea HOM05D006207 ORTHO05D007868 1.4e-09 67.0 65 50.8
arahy.Tifrunner.gnm1.ann1.WBCD4G Arachis hypogaea HOM05D006207 ORTHO05D007868 1.4e-09 67.0 65 50.8
FAN02G1499 Fragaria x ananassa HOM05D007863 ORTHO05D009265 1.4e-09 67.0 69 58.0
Lj3g0006922 Lotus japonicus HOM05D007863 ORTHO05D009265 1.9e-09 66.6 42 78.6
PGR102G1764 Punica granatum HOM05D007863 ORTHO05D009265 1.9e-09 66.6 42 78.6
Glyma.U032705 Glycine max HOM05D006207 ORTHO05D007868 3.2e-09 65.9 80 46.2
Manes.09G111300 Manihot esculenta HOM05D006207 ORTHO05D007868 3.2e-09 65.9 79 40.5
Sed0019485 Sechium edule HOM05D006207 ORTHO05D007868 3.2e-09 65.9 76 43.4
Ca_01070_v3 Cicer arietinum L. HOM05D007863 ORTHO05D009265 4.2e-09 65.5 42 73.8
Prupe.3G082000 Prunus persica HOM05D007863 ORTHO05D009265 4.2e-09 65.5 73 54.8
QL05p028236 Quercus lobata HOM05D007863 ORTHO05D009265 4.2e-09 65.5 45 71.1
Dinv12164 Davidia involucrata HOM05D006207 ORTHO05D007868 5.5e-09 65.1 83 45.8
Lj3g0003830 Lotus japonicus HOM05D007863 ORTHO05D009265 5.5e-09 65.1 56 58.9
Phvul.010G064400 Phaseolus vulgaris HOM05D006207 ORTHO05D007868 7.2e-09 64.7 78 46.2
RcHm_v2.0_Chr2g0136401 Rosa chinensis HOM05D007863 ORTHO05D009265 9.4e-09 64.3 78 53.8
CANSAT35G0048 Cannabis sativa HOM05D006207 ORTHO05D007868 1.2e-08 63.9 79 43.0
Cpa.g.sc10.233 Carica papaya HOM05D007863 ORTHO05D009265 1.2e-08 63.9 45 75.6
COL.COLO4_12919 Corchorus olitorius HOM05D007863 ORTHO05D009265 1.2e-08 63.9 51 70.6
Rhsim12G0192500 Rhododendron simsii HOM05D007863 ORTHO05D009265 1.2e-08 63.9 90 46.7
TWI74G1498 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 1.2e-08 63.9 79 40.5
Lalb_Chr14g0373721 Lupinus albus HOM05D007863 ORTHO05D009265 1.6e-08 63.5 42 73.8
Thecc.05G007100 Theobroma cacao HOM05D006207 ORTHO05D007868 1.6e-08 63.5 106 34.0
arahy.Tifrunner.gnm1.ann1.JQ3RYK Arachis hypogaea HOM05D007863 ORTHO05D009265 2.1e-08 63.2 61 57.4
MD17G1207500 Malus domestica HOM05D007863 ORTHO05D009265 2.1e-08 63.2 77 50.6
Duzib093G0843 Durio zibethinus HOM05D006207 ORTHO05D007868 2.7e-08 62.8 106 34.9
Thecc.06G070300 Theobroma cacao HOM05D007863 ORTHO05D009265 2.7e-08 62.8 50 70.0
TPR.G37228 Trifolium pratense HOM05D007863 ORTHO05D009265 2.7e-08 62.8 42 71.4
TAR633G0541 Trochodendron aralioides HOM05D006207 ORTHO05D007868 2.7e-08 62.8 78 43.6
Aqoxy1G01290 Aquilegia oxysepala HOM05D006207 ORTHO05D007868 3.6e-08 62.4 62 50.0
CSS0005162 Camellia sinensis var. sinensis HOM05D007863 ORTHO05D009265 3.6e-08 62.4 44 72.7
Lj3P946T49 Lonicera japonica HOM05D006207 ORTHO05D007868 3.6e-08 62.4 78 43.6
Psat5g301160 Pisum sativum HOM05D007863 ORTHO05D009265 3.6e-08 62.4 53 56.6
SalBow6G1507 Salvia bowleyana HOM05D000800 ORTHO05D000658 3.6e-08 62.4 38 78.9
Actinidia29070 Actinidia chinensis HOM05D006207 ORTHO05D007868 4.6e-08 62.0 81 39.5
Cfa001994 Carpinus fangiana HOM05D007863 ORTHO05D009265 4.6e-08 62.0 68 52.9
Manes.04G115800 Manihot esculenta HOM05D007863 ORTHO05D009265 4.6e-08 62.0 67 55.2
Atru.chr8.2331 Acer truncatum HOM05D006207 ORTHO05D007868 6.1e-08 61.6 61 52.5
Ca_20352_v3 Cicer arietinum L. HOM05D006207 ORTHO05D007868 6.1e-08 61.6 67 46.3
MELO3C026025.2 Cucumis melo HOM05D006207 ORTHO05D007868 6.1e-08 61.6 78 39.7
Glyma.01G125600 Glycine max HOM05D006207 ORTHO05D007868 7.9e-08 61.2 78 43.6
PGR031G0899 Punica granatum HOM05D006207 ORTHO05D007868 7.9e-08 61.2 79 40.5
Sabra03G0036200 Salix brachista HOM05D007863 ORTHO05D009265 7.9e-08 61.2 60 55.0
TAR623G0507 Trochodendron aralioides HOM05D006207 ORTHO05D007868 7.9e-08 61.2 78 41.0
CsaV3_4G026760 Cucumis sativus L. HOM05D006207 ORTHO05D007868 1.0e-07 60.8 76 40.8
Medtr2g103440 Medicago truncatula HOM05D007863 ORTHO05D009265 1.0e-07 60.8 42 69.0
Psat7g249160 Pisum sativum HOM05D006207 ORTHO05D007868 1.0e-07 60.8 78 42.3
Sed0003544 Sechium edule HOM05D006207 ORTHO05D007868 1.0e-07 60.8 66 47.0
Potri.001G171701 Populus trichocarpa HOM05D007863 ORTHO05D009265 1.4e-07 60.5 55 58.2
Rhsim08G0215300 Rhododendron simsii HOM05D007863 ORTHO05D009265 1.4e-07 60.5 54 61.1
SalBow1G6530 Salvia bowleyana HOM05D006207 ORTHO05D007868 1.4e-07 60.5 102 43.1
Ciclev10012309m.g Citrus clementina HOM05D006207 ORTHO05D007868 1.8e-07 60.1 105 34.3
Duzib106G1231 Durio zibethinus HOM05D006207 ORTHO05D007868 1.8e-07 60.1 78 38.5
TWI12G0528 Tripterygium wilfordii HOM05D007863 ORTHO05D009265 1.8e-07 60.1 42 73.8
unitig_27.g24873 Utricularia gibba HOM05D006207 ORTHO05D007868 1.8e-07 60.1 65 44.6
VMungo0331G1865 Vigna mungo HOM05D006207 ORTHO05D007868 1.8e-07 60.1 79 44.3
EL10Ac9g21922 Beta vulgaris HOM05D007863 ORTHO05D009265 2.3e-07 59.7 42 73.8
AUR62011544 Chenopodium quinoa HOM05D007863 ORTHO05D009265 2.3e-07 59.7 42 73.8
Haze_16524 Corylus avellana HOM05D007863 ORTHO05D009265 2.3e-07 59.7 44 68.2
THA.LOC104808229 Tarenaya hassleriana HOM05D007863 ORTHO05D009265 2.3e-07 59.7 48 62.5
Potri.003G062300 Populus trichocarpa HOM05D007863 ORTHO05D009265 3.0e-07 59.3 65 53.8
Actinidia11552 Actinidia chinensis HOM05D006207 ORTHO05D007868 3.9e-07 58.9 81 39.5
Cpa.g.sc5.234 Carica papaya HOM05D006207 ORTHO05D007868 3.9e-07 58.9 103 32.0
DCAR_025492 Daucus carota HOM05D007863 ORTHO05D009265 3.9e-07 58.9 74 50.0
Gohir.A09G167800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 3.9e-07 58.9 106 33.0
Gohir.A10G075500 Gossypium hirsutum HOM05D007863 ORTHO05D009265 3.9e-07 58.9 62 56.5
Gohir.D09G163700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 3.9e-07 58.9 106 33.0
Gohir.D10G076000 Gossypium hirsutum HOM05D007863 ORTHO05D009265 3.9e-07 58.9 62 56.5
Gorai.006G185200 Gossypium raimondii HOM05D006207 ORTHO05D007868 3.9e-07 58.9 106 33.0
Gorai.011G081800 Gossypium raimondii HOM05D007863 ORTHO05D009265 3.9e-07 58.9 62 56.5
GSVIVG01030275001 Vitis vinifera HOM05D006207 ORTHO05D002478 3.9e-07 58.9 76 44.7
CiPaw.09G215000 Carya illinoinensis HOM05D006207 ORTHO05D007868 5.1e-07 58.5 104 41.3
ClCG04G006690 Citrullus lanatus HOM05D006207 ORTHO05D007868 5.1e-07 58.5 78 41.0
Glyma.07G031800 Glycine max HOM05D007863 ORTHO05D009265 5.1e-07 58.5 42 69.0
Medtr4g014250 Medicago truncatula HOM05D006207 ORTHO05D007868 5.1e-07 58.5 79 41.8
Cfa017117 Carpinus fangiana HOM05D006207 ORTHO05D007868 6.7e-07 58.2 72 44.4
CiPaw.01G245400 Carya illinoinensis HOM05D007863 ORTHO05D009265 6.7e-07 58.2 41 68.3
Gorai.002G266400 Gossypium raimondii HOM05D006207 ORTHO05D007868 6.7e-07 58.2 78 38.5
Sc01g0005970 Simmondsia chinensis HOM05D006207 ORTHO05D007868 6.7e-07 58.2 79 41.8
TPR.G38680 Trifolium pratense HOM05D007863 ORTHO05D009265 6.7e-07 58.2 50 62.0
Medtr4g011030 Medicago truncatula HOM05D007863 ORTHO05D009265 8.8e-07 57.8 43 69.8
Prupe.6G284500 Prunus persica HOM05D006207 ORTHO05D007868 8.8e-07 57.8 65 46.2
Hma1.2p1_0515F.1_g170180 Hydrangea macrophylla HOM05D007863 ORTHO05D009265 1.1e-06 57.4 43 69.8
Nn2g11009 Nelumbo nucifera HOM05D006207 ORTHO05D007868 1.1e-06 57.4 60 50.0
Ciclev10027122m.g Citrus clementina HOM05D007863 ORTHO05D009265 1.5e-06 57.0 42 64.3
COL.COLO4_14454 Corchorus olitorius HOM05D006207 ORTHO05D007868 1.5e-06 57.0 106 33.0
Lalb_Chr04g0262451 Lupinus albus HOM05D007863 ORTHO05D009265 1.5e-06 57.0 51 60.8
Lalb_Chr12g0207271 Lupinus albus HOM05D006207 ORTHO05D007868 1.5e-06 57.0 84 40.5
Rhsim04G0125000 Rhododendron simsii HOM05D006207 ORTHO05D007868 1.5e-06 57.0 79 39.2
RcHm_v2.0_Chr3g0461671 Rosa chinensis HOM05D006207 ORTHO05D007868 1.5e-06 57.0 78 41.0
THA.LOC104823306 Tarenaya hassleriana HOM05D006207 ORTHO05D007868 1.5e-06 57.0 99 33.3
Lalb_Chr25g0279481 Lupinus albus HOM05D007863 ORTHO05D009265 2.0e-06 56.6 46 60.9
Manes.11G054000 Manihot esculenta HOM05D007863 ORTHO05D009265 2.0e-06 56.6 69 50.7
QL07p033964 Quercus lobata HOM05D006207 ORTHO05D007868 2.0e-06 56.6 68 50.0
Psat7g256040 Pisum sativum HOM05D007863 ORTHO05D009265 2.5e-06 56.2 50 60.0
Gohir.A01G229800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 3.3e-06 55.8 106 33.0
DCAR_023998 Daucus carota HOM05D006207 ORTHO05D007868 5.7e-06 55.1 78 38.5
Glyma.13G364100 Glycine max HOM05D007863 ORTHO05D009265 5.7e-06 55.1 36 72.2
DCAR_016255 Daucus carota HOM05D007863 ORTHO05D009265 7.4e-06 54.7 43 62.8
FAN05G3975 Fragaria x ananassa HOM05D006207 ORTHO05D007868 7.4e-06 54.7 105 34.3
FAN05G5543 Fragaria x ananassa HOM05D006207 ORTHO05D007868 7.4e-06 54.7 105 34.3
Glyma.08G211000 Glycine max HOM05D007863 ORTHO05D009265 7.4e-06 54.7 41 68.3
Glyma.15G009600 Glycine max HOM05D007863 ORTHO05D009265 7.4e-06 54.7 46 60.9
vmacro08907 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 7.4e-06 54.7 64 45.3
CANSAT56G0457 Cannabis sativa HOM05D007863 ORTHO05D009265 9.7e-06 54.3 42 61.9


User provided reference genes

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