Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 5.2e-263 911.0 642 100.0
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 2.6e-145 520.0 655 49.9
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 1.3e-144 517.7 659 58.3
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 1.1e-143 514.6 658 56.4
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 7.0e-143 511.9 615 55.4
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 1.7e-141 507.3 644 53.1
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 2.3e-130 470.3 652 48.5
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 8.3e-128 461.8 648 47.2
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 9.2e-127 458.4 648 48.5
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 8.9e-122 441.8 659 46.4
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 1.7e-120 437.6 655 50.7
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.1e-119 434.9 661 53.4
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 6.0e-118 429.1 654 55.2
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.3e-117 427.9 659 52.8
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 1.7e-117 427.6 648 46.1
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 6.6e-117 425.6 673 47.8
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 9.6e-116 421.8 666 46.2
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 1.4e-114 417.9 699 46.8
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 9.0e-114 415.2 650 44.9
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 9.9e-113 411.8 655 46.7
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 1.2e-110 404.8 642 44.5
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 3.0e-109 400.2 647 43.0
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 4.3e-108 396.4 655 45.6
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 5.6e-108 396.0 699 42.8
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 1.6e-107 394.4 688 44.6
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 4.8e-107 392.9 671 41.3
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 6.2e-107 392.5 566 50.9
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 3.1e-106 390.2 675 43.3
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 3.1e-106 390.2 522 51.1
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 7.6e-105 385.6 697 46.1
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 9.9e-105 385.2 641 42.0
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 6.4e-104 382.5 646 51.1
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 1.1e-103 381.7 657 45.4
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 1.4e-103 381.3 645 47.1
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 2.4e-103 380.6 648 43.5
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 1.2e-102 378.3 646 44.9
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 6.0e-102 375.9 587 41.2
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 1.0e-101 375.2 687 43.4
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 1.0e-101 375.2 687 41.0
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 1.0e-101 375.2 679 45.9
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 3.0e-101 373.6 653 48.9
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 5.1e-101 372.9 661 40.4
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 5.1e-101 372.9 657 45.1
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 1.5e-100 371.3 670 42.1
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 4.3e-100 369.8 580 40.9
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 1.3e-99 368.2 673 43.1
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 1.6e-99 367.9 634 46.2
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 2.1e-99 367.5 440 52.5
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 2.8e-99 367.1 656 47.4
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 4.8e-99 366.3 686 40.2
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 8.1e-99 365.5 664 48.6
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 3.4e-97 360.1 676 42.2
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 4.9e-96 356.3 644 39.6
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 1.5e-92 344.7 679 41.2
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 3.3e-92 343.6 678 43.1
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.4e-90 338.2 650 42.2
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 4.0e-90 336.7 705 40.3
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 5.8e-89 332.8 660 41.8
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 1.7e-88 331.3 693 43.4
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.2e-88 330.9 638 45.8
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 1.1e-87 328.6 649 44.2
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 1.1e-87 328.6 677 47.0
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 7.1e-87 325.9 675 40.3
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 2.1e-86 324.3 576 40.1
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 1.0e-85 322.0 678 47.1
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 5.1e-85 319.7 657 38.7
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 4.3e-84 316.6 549 46.4
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 5.7e-84 316.2 657 43.2
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 5.7e-84 316.2 660 47.9
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 9.7e-84 315.5 724 38.7
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 4.8e-83 313.2 712 41.2
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 8.2e-83 312.4 672 47.2
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 1.1e-82 312.0 658 40.0
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 1.1e-82 312.0 653 47.6
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 2.6e-81 307.4 642 44.4
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 5.9e-81 306.2 699 37.9
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 7.9e-78 295.8 657 40.5
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 2.3e-77 294.3 703 36.7
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 5.1e-77 293.1 571 41.2
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 1.1e-76 292.0 675 37.9
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 4.3e-76 290.0 705 36.7
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.7e-75 288.1 563 43.7
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 1.7e-75 288.1 712 41.9
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 3.7e-75 287.0 682 38.6
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.1e-74 285.4 312 54.8
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 4.1e-74 283.5 593 40.0
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 1.5e-73 281.6 578 41.9
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 4.2e-71 273.5 598 40.1
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 5.5e-71 273.1 668 37.7
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 9.4e-71 272.3 431 47.6
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 1.4e-69 268.5 669 37.7
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 2.3e-69 267.7 668 37.6
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 6.7e-69 266.2 563 40.1
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 4.4e-68 263.5 653 40.4
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 1.3e-67 261.9 353 53.3
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 3.4e-65 253.8 651 35.8
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 4.5e-65 253.4 662 40.2
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 6.5e-64 249.6 414 47.3
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 9.4e-63 245.7 575 40.0
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 6.1e-62 243.0 470 38.5
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 3.3e-60 237.3 629 43.9
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 1.3e-59 235.3 563 37.7
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 2.0e-57 228.0 632 43.2
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 2.6e-57 227.6 632 43.4
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 3.8e-56 223.8 628 43.5
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 1.1e-55 222.2 632 43.4
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.5e-55 221.1 302 50.7
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 2.1e-54 218.0 635 40.9
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 3.6e-54 217.2 667 33.9
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 8.0e-54 216.1 639 36.0
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.9e-49 199.9 473 36.6
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 7.5e-44 183.0 251 45.8
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 5.4e-42 176.8 318 41.5
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 5.5e-39 166.8 661 38.1
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 9.5e-39 166.0 151 61.6
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 9.8e-36 156.0 566 36.6
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 3.7e-35 154.1 656 34.3
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 1.6e-33 148.7 365 40.3
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 3.8e-32 144.1 136 62.5
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 6.6e-24 116.7 149 50.3
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 2.5e-23 114.8 624 27.1
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 3.6e-22 110.9 138 48.6
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 4.7e-22 110.5 113 54.9
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 2.2e-19 101.7 434 30.6
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 1.1e-18 99.4 97 56.7
MELO3C017820.2 Cucumis melo HOM05D005724 ORTHO05D006636 2.4e-18 98.2 105 54.3
MELO3C003738.2 Cucumis melo HOM05D005724 ORTHO05D006636 7.0e-18 96.7 105 53.3
Cfa025790 Carpinus fangiana HOM05D005724 ORTHO05D006636 2.1e-17 95.1 593 29.8
PSO339G2657 Papaver somniferum HOM05D005724 ORTHO05D006636 3.0e-16 91.3 140 47.9
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 1.9e-15 88.6 149 40.9
Nitab4.5_0005621g0090 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.1e-14 85.1 104 50.0
MD04G1246500 Malus domestica HOM05D005724 ORTHO05D006636 3.2e-10 71.2 128 40.6
AagrBONN_evm.TU.Sc2ySwM_344.5238 Anthoceros agrestis HOM05D005724 ORTHO05D006636 1.2e-09 69.3 539 26.5


User provided reference genes

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