Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G0078 Salvia bowleyana HOM05D006303 ORTHO05D008007 6.0e-104 381.3 268 100.0
MSTRG.24747 Avicennia marina HOM05D006303 ORTHO05D008007 7.4e-46 188.3 295 54.2
MSTRG.4016 Avicennia marina HOM05D006303 ORTHO05D008007 3.8e-42 176.0 344 46.5
Lsat_1_v5_gn_5_148441 Lactuca sativa HOM05D006303 ORTHO05D008007 6.5e-42 175.3 304 44.7
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 3.2e-41 172.9 290 45.2
DCAR_027185 Daucus carota HOM05D006303 ORTHO05D008007 9.4e-41 171.4 329 52.0
CiPaw.01G163800 Carya illinoinensis HOM05D006303 ORTHO05D008007 8.0e-40 168.3 338 44.7
Hma1.2p1_0517F.1_g171030 Hydrangea macrophylla HOM05D006303 ORTHO05D008007 1.4e-39 167.5 327 45.3
ECA234G3153 Erigeron canadensis HOM05D006303 ORTHO05D008007 3.9e-39 166.0 314 42.0
Oeu034363.1 Olea europaea HOM05D006303 ORTHO05D008007 3.9e-39 166.0 322 51.6
FAN07G1279 Fragaria x ananassa HOM05D006303 ORTHO05D008007 8.8e-39 164.9 359 40.9
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 1.1e-38 164.5 340 41.2
TWI09G0488 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 2.6e-38 163.3 329 49.5
FvH4_4g15080 Fragaria vesca HOM05D006303 ORTHO05D008007 3.3e-38 162.9 361 40.2
FAN12G1910 Fragaria x ananassa HOM05D006303 ORTHO05D008007 9.7e-38 161.4 361 39.9
Manes.15G026800 Manihot esculenta HOM05D006303 ORTHO05D008007 9.7e-38 161.4 344 41.9
FAN22G0434 Fragaria x ananassa HOM05D006303 ORTHO05D008007 1.3e-37 161.0 360 40.3
Medtr5g005960 Medicago truncatula HOM05D006303 ORTHO05D008007 2.2e-37 160.2 335 42.4
SalBow5G2627 Salvia bowleyana HOM05D006303 ORTHO05D008007 3.7e-37 159.5 323 49.2
SalBow5G4234 Salvia bowleyana HOM05D006303 ORTHO05D008007 1.1e-36 157.9 327 48.6
Haze_00877 Corylus avellana HOM05D006303 ORTHO05D008007 1.4e-36 157.5 325 47.4
FAN17G3084 Fragaria x ananassa HOM05D006303 ORTHO05D008007 1.4e-36 157.5 360 39.7
Nn1g02244 Nelumbo nucifera HOM05D006303 ORTHO05D008007 7.7e-35 151.8 340 47.6
Solyc09g075750.1 Solanum lycopersicum HOM05D006303 ORTHO05D008007 1.0e-34 151.4 328 42.7
Sopen09g030560 Solanum pennellii HOM05D006303 ORTHO05D008007 1.0e-34 151.4 327 42.8
Nitab4.5_0000260g0090 Nicotiana tabacum HOM05D006303 ORTHO05D008007 1.3e-34 151.0 348 44.0
Peaxi162Scf00437g00041 Petunia axillaris HOM05D006303 ORTHO05D008007 1.3e-34 151.0 349 40.7
Cc03_g03480 Coffea canephora HOM05D006303 ORTHO05D008007 2.9e-34 149.8 362 38.7
Lj1g0001361 Lotus japonicus HOM05D006303 ORTHO05D008007 2.9e-34 149.8 351 40.5
Nn4g26265 Nelumbo nucifera HOM05D006303 ORTHO05D008007 2.9e-34 149.8 321 48.9
PGSC0003DMG400031852 Solanum tuberosum HOM05D006303 ORTHO05D008007 6.5e-34 148.7 338 41.7
Ca_24387_v3 Cicer arietinum L. HOM05D006303 ORTHO05D008007 1.1e-33 147.9 303 48.8
QL06p003344 Quercus lobata HOM05D006303 ORTHO05D008007 1.1e-33 147.9 341 39.6
Cfa015618 Carpinus fangiana HOM05D006303 ORTHO05D008007 2.5e-33 146.7 325 46.2
TWI53G0528 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 2.5e-33 146.7 305 48.2
CiPaw.02G095400 Carya illinoinensis HOM05D006303 ORTHO05D008007 3.2e-33 146.4 346 39.9
Psat4g211440 Pisum sativum HOM05D006303 ORTHO05D008007 3.2e-33 146.4 338 39.3
Glyma.11G004400 Glycine max HOM05D006303 ORTHO05D008007 4.2e-33 146.0 363 40.2
VMungo1215G3149 Vigna mungo HOM05D006303 ORTHO05D008007 1.2e-32 144.4 346 42.5
Nitab4.5_0007531g0010 Nicotiana tabacum HOM05D006303 ORTHO05D008007 2.7e-32 143.3 349 42.7
Oeu004490.1 Olea europaea HOM05D006303 ORTHO05D008007 2.7e-32 143.3 335 41.8
Cpa.g.sc147.34 Carica papaya HOM05D006303 ORTHO05D008007 8.0e-32 141.7 319 44.5
TAR365G0083 Trochodendron aralioides HOM05D006303 ORTHO05D008007 1.0e-31 141.4 312 47.4
ClCG06G006020 Citrullus lanatus HOM05D006303 ORTHO05D008007 4.0e-31 139.4 342 41.2
PGR004G2192 Punica granatum HOM05D006303 ORTHO05D008007 4.0e-31 139.4 347 43.2
TPR.G37902 Trifolium pratense HOM05D006303 ORTHO05D008007 5.2e-31 139.0 351 43.3
Lsat_1_v5_gn_7_65920 Lactuca sativa HOM05D006303 ORTHO05D008007 1.2e-30 137.9 291 42.3
Aqoxy5G00502 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 1.5e-30 137.5 342 42.4
Dinv44508 Davidia involucrata HOM05D006303 ORTHO05D008007 1.5e-30 137.5 291 41.2
Gorai.006G237600 Gossypium raimondii HOM05D006303 ORTHO05D008007 1.5e-30 137.5 342 43.9
Ah.04g154500 Amaranthus hybridus HOM05D006303 ORTHO05D008007 4.4e-30 136.0 341 43.4
Ciclev10005353m.g Citrus clementina HOM05D006303 ORTHO05D008007 4.4e-30 136.0 309 50.5
Dinv38426 Davidia involucrata HOM05D006303 ORTHO05D008007 4.4e-30 136.0 319 47.0
Duzib052G1015 Durio zibethinus HOM05D006303 ORTHO05D008007 4.4e-30 136.0 359 37.0
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 5.7e-30 135.6 338 37.9
Gohir.D09G217100 Gossypium hirsutum HOM05D006303 ORTHO05D008007 1.3e-29 134.4 342 45.3
BolC9t53571H Brassica oleracea HOM05D006303 ORTHO05D008007 1.7e-29 134.0 295 49.2
COL.COLO4_06194 Corchorus olitorius HOM05D006303 ORTHO05D008007 1.7e-29 134.0 314 39.8
Gohir.A09G214600 Gossypium hirsutum HOM05D006303 ORTHO05D008007 1.7e-29 134.0 345 44.3
Thecc.04G227500 Theobroma cacao HOM05D006303 ORTHO05D008007 2.2e-29 133.7 367 38.4
Sabra10G0052900 Salix brachista HOM05D006303 ORTHO05D008007 2.8e-29 133.3 363 35.8
BcaC04g23610 Brassica carinata HOM05D006303 ORTHO05D008007 8.3e-29 131.7 293 49.1
C09p06490 Brassica napus HOM05D006303 ORTHO05D008007 8.3e-29 131.7 277 49.5
Migut.G00317 Erythranthe guttata HOM05D006303 ORTHO05D008007 1.4e-28 131.0 179 55.3
Phvul.002G047200 Phaseolus vulgaris HOM05D006303 ORTHO05D008007 1.8e-28 130.6 333 40.8
Duzib212G0816 Durio zibethinus HOM05D006303 ORTHO05D008007 4.1e-28 129.4 362 40.3
MBI17_g34761_MAGBIO Magnolia biondii HOM05D006303 ORTHO05D008007 4.1e-28 129.4 280 47.1
Atru.chr4.2516 Acer truncatum HOM05D006303 ORTHO05D008007 5.3e-28 129.0 345 42.3
MELO3C014489.2 Cucumis melo HOM05D006303 ORTHO05D008007 7.0e-28 128.6 340 38.2
CANSAT78G1152 Cannabis sativa HOM05D006303 ORTHO05D008007 1.6e-27 127.5 399 34.6
Potri.010G090500 Populus trichocarpa HOM05D006303 ORTHO05D008007 1.6e-27 127.5 333 35.1
MD16G1188900 Malus domestica HOM05D006303 ORTHO05D008007 1.0e-26 124.8 340 48.2
Prupe.1G155600 Prunus persica HOM05D006303 ORTHO05D008007 1.3e-26 124.4 341 46.3
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 1.7e-26 124.0 306 40.2
CsaV3_6G038260 Cucumis sativus L. HOM05D006303 ORTHO05D008007 2.2e-26 123.6 361 37.4
A09p05910 Brassica napus HOM05D006303 ORTHO05D008007 5.0e-26 122.5 305 50.2
arahy.Tifrunner.gnm1.ann1.RSQ2PF Arachis hypogaea HOM05D006303 ORTHO05D008007 1.9e-25 120.6 317 37.5
THA.LOC104802760 Tarenaya hassleriana HOM05D006303 ORTHO05D008007 3.2e-25 119.8 306 44.4
PSO717G0040 Papaver somniferum HOM05D006303 ORTHO05D008007 4.2e-25 119.4 319 44.8
PSO675G0548 Papaver somniferum HOM05D006303 ORTHO05D008007 1.6e-24 117.5 317 44.5
A06p36730 Brassica napus HOM05D006303 ORTHO05D008007 3.6e-24 116.3 290 44.1
BraA06t26595Z Brassica rapa HOM05D006303 ORTHO05D008007 3.6e-24 116.3 290 44.1
MD13G1188500 Malus domestica HOM05D006303 ORTHO05D008007 4.7e-24 115.9 349 42.1
Aqoxy2G03353 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 6.1e-24 115.5 271 45.4
C07p41810 Brassica napus HOM05D006303 ORTHO05D008007 6.1e-24 115.5 295 43.7
BraA09t36233Z Brassica rapa HOM05D006303 ORTHO05D008007 2.3e-23 113.6 301 49.2
BcaNung03972 Brassica carinata HOM05D006303 ORTHO05D008007 3.0e-23 113.2 297 48.1
SGA_v2.0_scaffold10G05105 Striga asiatica HOM05D006303 ORTHO05D008007 6.8e-23 112.1 194 48.5
BcaNung02811 Brassica carinata HOM05D006303 ORTHO05D008007 8.8e-23 111.7 295 43.1
BolC7t44712H Brassica oleracea HOM05D006303 ORTHO05D008007 8.8e-23 111.7 295 43.1
EL10As3g23363 Beta vulgaris HOM05D006303 ORTHO05D008007 9.8e-22 108.2 355 41.7
AL6G38240 Arabidopsis lyrata HOM05D006303 ORTHO05D008007 1.7e-21 107.5 329 46.8
ClCG05G005270 Citrullus lanatus HOM05D006303 ORTHO05D008007 1.7e-21 107.5 306 45.8
AT5G26230 Arabidopsis thaliana HOM05D006303 ORTHO05D008007 6.3e-21 105.5 328 46.3
MELO3C006546.2 Cucumis melo HOM05D006303 ORTHO05D008007 8.3e-21 105.1 300 46.0
Nn2g13850 Nelumbo nucifera HOM05D006303 ORTHO05D008007 1.8e-20 104.0 275 44.0
CsaV3_3G013490 Cucumis sativus L. HOM05D006303 ORTHO05D008007 7.0e-20 102.1 307 45.6
Sc13g0004270 Simmondsia chinensis HOM05D006303 ORTHO05D008007 9.1e-20 101.7 321 41.1
Thhalv10004558m.g Eutrema salsugineum HOM05D006303 ORTHO05D008007 2.0e-19 100.5 325 44.9
Sp2g21520 Schrenkiella parvula HOM05D006303 ORTHO05D008007 7.7e-19 98.6 296 46.3
SGA_v2.0_scaffold257G45734 Striga asiatica HOM05D006303 ORTHO05D008007 7.7e-19 98.6 199 40.2
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 7.7e-19 98.6 268 45.9
CARHR187140 Cardamine hirsuta HOM05D006303 ORTHO05D008007 2.9e-18 96.7 337 42.1
Carub.0006s2405 Capsella rubella HOM05D006303 ORTHO05D008007 1.9e-17 94.0 341 41.1
AUR62038095 Chenopodium quinoa HOM05D006303 ORTHO05D008007 1.9e-17 94.0 176 48.3
Actinidia40170 Actinidia chinensis HOM05D006303 ORTHO05D008007 9.5e-17 91.7 75 70.7
arahy.Tifrunner.gnm1.ann1.KMTU0V Arachis hypogaea HOM05D006303 ORTHO05D008007 8.0e-16 88.6 303 38.3
arahy.Tifrunner.gnm1.ann1.S8XWMG Arachis hypogaea HOM05D006303 ORTHO05D008007 4.0e-15 86.3 309 35.9
Nn3g18018 Nelumbo nucifera HOM05D006303 ORTHO05D008007 3.4e-14 83.2 145 42.8
Zm00001eb350820 Zea mays HOM05D006303 ORTHO05D008007 3.4e-14 83.2 341 35.5
Sed0019333 Sechium edule HOM05D006303 ORTHO05D008007 7.5e-14 82.0 279 40.1
PSO135G0705 Papaver somniferum HOM05D006303 ORTHO05D008007 8.3e-13 78.6 327 30.6
Rhsim04G0205200 Rhododendron simsii HOM05D006303 ORTHO05D008007 2.4e-12 77.0 153 41.2
Lj6C598T9 Lonicera japonica HOM05D006303 ORTHO05D008007 9.2e-12 75.1 82 63.4
AUR62038636 Chenopodium quinoa HOM05D006303 ORTHO05D008007 1.2e-11 74.7 254 35.8
Os05g0390600 Oryza sativa ssp. japonica HOM05D006303 ORTHO05D008007 7.8e-11 72.0 332 41.9
HPP92_003595 Vanilla planifolia HOM05D006303 ORTHO05D008007 2.3e-10 70.5 328 38.7
Aa31LG11G10320 Aethionema arabicum HOM05D006303 ORTHO05D008007 2.9e-10 70.1 221 45.2
PSO384G0046 Papaver somniferum HOM05D006303 ORTHO05D008007 1.2e-08 64.7 382 28.8
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 4.0e-07 59.7 285 30.2
Dinv35665 Davidia involucrata HOM05D002337 ORTHO05D002412 5.2e-07 59.3 57 54.4
ATR0626G102 Amborella trichopoda HOM05D006303 ORTHO05D008007 1.2e-06 58.2 150 38.7
SalBow6G5667 Salvia bowleyana HOM05D002337 ORTHO05D002412 1.2e-06 58.2 64 51.6
SEGI_38862 Sequoiadendron giganteum HOM05D006303 ORTHO05D008007 1.2e-06 58.2 146 35.6
Carub.0004s1928 Capsella rubella HOM05D002337 ORTHO05D002412 1.5e-06 57.8 77 48.1
Aqoxy2G01952 Aquilegia oxysepala HOM05D002337 ORTHO05D002412 2.6e-06 57.0 42 64.3
ClCG04G008580 Citrullus lanatus HOM05D002337 ORTHO05D002412 4.4e-06 56.2 52 53.8
Sabra06G0165700 Salix brachista HOM05D002337 ORTHO05D002412 4.4e-06 56.2 67 50.7
TAR623G1231 Trochodendron aralioides HOM05D002337 ORTHO05D002412 4.4e-06 56.2 46 63.0
Lj2C103T3 Lonicera japonica HOM05D002337 ORTHO05D002412 5.8e-06 55.8 56 58.9
CANSAT80G1900 Cannabis sativa HOM05D002337 ORTHO05D002412 7.5e-06 55.5 61 52.5
Manes.08G072701 Manihot esculenta HOM05D002337 ORTHO05D002412 7.5e-06 55.5 59 52.5
Manes.08G072800 Manihot esculenta HOM05D002337 ORTHO05D002412 7.5e-06 55.5 59 52.5
RhsimUnG0167900 Rhododendron simsii HOM05D002337 ORTHO05D002412 7.5e-06 55.5 299 25.8
C04p10660 Brassica napus HOM05D002337 ORTHO05D002412 9.8e-06 55.1 66 53.0
Eucgr.A01216 Eucalyptus grandis HOM05D002337 ORTHO05D002412 9.8e-06 55.1 42 64.3
Oeu016497.1 Olea europaea HOM05D002337 ORTHO05D002412 9.8e-06 55.1 57 54.4
Rhsim05G0185600 Rhododendron simsii HOM05D002337 ORTHO05D002412 9.8e-06 55.1 52 57.7
Thecc.05G047800 Theobroma cacao HOM05D002337 ORTHO05D002412 9.8e-06 55.1 67 52.2
TWI38G1175 Tripterygium wilfordii HOM05D002337 ORTHO05D002412 9.8e-06 55.1 63 49.2


User provided reference genes

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