Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.4e-166 589.7 328 100.0
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.4e-166 589.7 328 100.0
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 1.1e-112 410.6 330 69.1
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 3.7e-108 395.6 329 67.8
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 1.1e-104 384.0 335 64.5
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 7.1e-99 364.8 330 60.3
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 9.3e-99 364.4 330 61.8
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 2.7e-98 362.8 329 64.4
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 5.6e-96 355.1 330 59.1
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.8e-94 350.1 330 60.6
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 5.3e-94 348.6 333 58.9
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 9.0e-94 347.8 332 57.2
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 9.9e-93 344.4 333 63.7
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.9e-92 342.8 335 58.5
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 9.3e-91 337.8 333 61.3
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 2.3e-89 333.2 331 55.9
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 5.1e-89 332.0 333 61.6
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 1.5e-88 330.5 331 62.8
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 1.3e-87 327.4 333 61.3
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 2.8e-87 326.2 333 54.7
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 4.8e-87 325.5 345 55.4
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 6.2e-87 325.1 268 67.5
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 6.2e-87 325.1 332 56.0
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 1.4e-86 323.9 331 55.6
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 5.3e-86 322.0 332 58.1
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 6.9e-86 321.6 333 61.9
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 5.8e-85 318.5 331 61.3
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.2e-84 316.6 329 54.1
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.8e-84 315.8 326 56.4
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 4.9e-84 315.5 331 58.3
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 8.4e-84 314.7 331 58.3
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 8.4e-84 314.7 334 55.1
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 7.1e-83 311.6 327 55.7
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 6.7e-81 305.1 332 59.0
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.1e-80 304.3 325 53.2
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 1.5e-80 303.9 332 54.8
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 9.6e-80 301.2 332 58.7
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 2.1e-79 300.1 385 49.1
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 2.8e-79 299.7 325 52.9
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 8.1e-79 298.1 325 52.6
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 5.3e-78 295.4 332 56.9
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 9.0e-78 294.7 334 58.7
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 2.6e-77 293.1 327 54.4
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 7.6e-77 291.6 332 52.1
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.2e-76 290.0 331 59.5
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 6.5e-76 288.5 329 52.0
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 1.4e-75 287.3 332 50.6
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 1.4e-75 287.3 330 54.2
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 4.2e-75 285.8 337 57.6
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 2.7e-74 283.1 275 57.5
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 3.5e-74 282.7 334 56.0
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 7.9e-74 281.6 333 53.8
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.0e-73 281.2 334 50.6
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 3.0e-73 279.6 331 52.0
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 3.0e-73 279.6 339 50.1
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 5.7e-72 275.4 340 57.1
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 4.8e-71 272.3 333 55.6
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 4.1e-70 269.2 328 55.5
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 4.1e-70 269.2 334 53.6
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 9.0e-70 268.1 321 56.1
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 2.0e-69 266.9 334 47.9
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 7.6e-69 265.0 338 48.2
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.0e-68 264.6 333 49.8
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 1.3e-68 264.2 331 48.0
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 2.2e-68 263.5 392 43.1
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 3.8e-68 262.7 333 49.8
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 1.4e-67 260.8 338 47.9
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 4.2e-67 259.2 331 47.4
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 7.2e-67 258.5 318 49.1
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 9.3e-67 258.1 333 53.2
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 1.2e-66 257.7 329 49.2
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 1.3e-65 254.2 392 41.6
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.8e-65 253.8 325 47.7
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 3.9e-65 252.7 332 52.7
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 6.7e-65 251.9 331 50.8
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 6.7e-65 251.9 332 52.7
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 1.5e-64 250.8 403 41.9
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 1.6e-63 247.3 333 51.7
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 1.6e-63 247.3 306 50.0
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 2.4e-62 243.4 331 49.2
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 6.9e-62 241.9 329 53.2
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 1.5e-61 240.7 333 50.5
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 1.5e-61 240.7 324 46.0
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 1.5e-61 240.7 332 46.1
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 2.0e-61 240.4 390 47.2
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.6e-61 240.0 332 46.7
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 1.0e-60 238.0 332 50.0
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.7e-60 237.3 304 50.7
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.2e-60 236.9 278 54.7
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 8.5e-60 235.0 320 50.3
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.9e-59 233.8 322 46.3
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 9.4e-59 231.5 332 42.8
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 1.2e-58 231.1 332 43.7
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 2.0e-56 223.8 328 44.8
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 5.7e-56 222.2 319 44.2
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.7e-55 220.7 303 50.5
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 2.2e-55 220.3 333 49.8
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 4.8e-55 219.2 324 44.4
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 1.5e-53 214.2 283 44.2
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 3.4e-53 213.0 373 39.9
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 5.9e-53 212.2 328 45.4
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.0e-52 211.5 264 45.8
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.7e-52 210.7 327 47.4
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 1.7e-52 210.7 185 60.5
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 6.5e-52 208.8 303 42.9
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 8.5e-52 208.4 329 46.8
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 3.2e-51 206.5 304 43.8
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 3.2e-51 206.5 303 42.9
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 1.6e-50 204.1 330 46.1
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 2.1e-50 203.8 329 47.1
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 3.6e-50 203.0 338 39.3
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 6.1e-50 202.2 333 45.9
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 6.1e-50 202.2 334 39.8
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.0e-49 201.4 264 53.8
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 1.4e-49 201.1 365 38.9
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 6.7e-49 198.7 390 37.2
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 8.8e-49 198.4 301 46.5
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 1.5e-48 197.6 362 43.6
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.6e-48 196.8 352 38.1
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 4.4e-48 196.1 297 42.1
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 4.4e-48 196.1 296 45.9
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 4.4e-48 196.1 306 48.0
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 7.4e-48 195.3 301 47.5
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.3e-47 194.5 308 43.2
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 6.3e-47 192.2 263 52.9
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 1.4e-46 191.0 365 37.5
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 1.2e-45 188.0 332 39.2
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 7.7e-45 185.3 329 40.1
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 5.0e-44 182.6 294 45.2
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 5.0e-44 182.6 150 64.7
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 1.9e-43 180.6 195 51.8
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 2.5e-43 180.3 325 40.0
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 2.5e-43 180.3 325 40.0
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 3.2e-43 179.9 295 39.7
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.4e-40 169.5 184 51.6
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 2.0e-37 160.6 121 67.8
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 3.2e-35 153.3 313 37.7
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 3.6e-34 149.8 209 42.1
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 8.8e-33 145.2 178 50.0
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 4.4e-32 142.9 125 62.4
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 4.8e-31 139.4 328 34.1
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 7.0e-30 135.6 243 43.6
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 2.2e-28 130.6 153 49.0
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.0e-28 129.4 356 30.3
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 1.9e-27 127.5 122 58.2
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 2.8e-26 123.6 123 49.6
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 1.4e-25 121.3 262 42.7
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 2.3e-25 120.6 123 52.8
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 5.2e-25 119.4 309 33.0
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 8.8e-25 118.6 123 53.7
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 8.8e-25 118.6 123 53.7
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 4.4e-24 116.3 226 37.6
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 1.3e-23 114.8 134 53.0
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 2.4e-22 110.5 135 51.9
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.0e-20 105.1 167 41.9
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 6.6e-20 102.4 246 37.0
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 1.5e-19 101.3 286 30.4
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.5e-19 100.5 359 26.7
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 6.1e-18 95.9 106 54.7
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 2.3e-17 94.0 294 29.9
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 4.9e-15 86.3 46 84.8
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 1.1e-14 85.1 123 40.7
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 1.1e-14 85.1 123 40.7
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 3.2e-14 83.6 65 66.2
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 9.2e-14 82.0 122 44.3
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 3.5e-13 80.1 84 57.1
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.3e-12 78.2 112 41.1
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 1.3e-12 78.2 282 28.4
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 3.9e-12 76.6 308 29.5
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 1.1e-11 75.1 330 26.1
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 2.5e-11 73.9 82 50.0
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 1.5e-08 64.7 53 60.4
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 4.4e-08 63.2 60 55.0
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 5.8e-08 62.8 115 37.4
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 5.8e-08 62.8 115 37.4
Mapoly0003s0015 Marchantia polymorpha HOM05D019185 ORTHO05D030113 1.4e-06 58.2 89 41.6


User provided reference genes

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