Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow1G8342 Salvia bowleyana HOM05D001461 ORTHO05D002801 2.2e-52 208.8 112 100.0
SalBow3G2208 Salvia bowleyana HOM05D001461 ORTHO05D002801 5.7e-16 87.8 47 95.7
Migut.B01817 Erythranthe guttata HOM05D001461 ORTHO05D002801 2.2e-12 75.9 47 80.9
MSTRG.20879 Avicennia marina HOM05D001461 ORTHO05D002801 1.2e-10 70.1 47 70.2
SGA_v2.0_scaffold4G02267 Striga asiatica HOM05D001461 ORTHO05D002801 1.0e-09 67.0 47 68.1
MSTRG.17310 Avicennia marina HOM05D001461 ORTHO05D002801 1.4e-09 66.6 47 68.1
DCAR_027744 Daucus carota HOM05D001461 ORTHO05D002801 8.8e-09 63.9 45 71.1
Peaxi162Scf00074g01418 Petunia axillaris HOM05D001461 ORTHO05D002801 8.8e-09 63.9 45 68.9
Cc08_g15570 Coffea canephora HOM05D001461 ORTHO05D002801 1.2e-08 63.5 42 71.4
Hund14248 Selenicereus undatus HOM05D001461 ORTHO05D002801 1.5e-08 63.2 45 68.9
Potri.003G135000 Populus trichocarpa HOM05D001461 ORTHO05D002801 2.0e-08 62.8 45 68.9
PGSC0003DMG400012313 Solanum tuberosum HOM05D001461 ORTHO05D002801 2.0e-08 62.8 45 66.7
CAN.G532.61 Capsicum annuum HOM05D001461 ORTHO05D002801 2.6e-08 62.4 45 66.7
Nitab4.5_0002564g0050 Nicotiana tabacum HOM05D001461 ORTHO05D002801 2.6e-08 62.4 45 66.7
Oeu063668.1 Olea europaea HOM05D001461 ORTHO05D002801 2.6e-08 62.4 42 71.4
Sc01g0003070 Simmondsia chinensis HOM05D001461 ORTHO05D002801 2.6e-08 62.4 42 71.4
Dinv37564 Davidia involucrata HOM05D001461 ORTHO05D002801 3.4e-08 62.0 45 68.9
Manes.02G014200 Manihot esculenta HOM05D001461 ORTHO05D002801 3.4e-08 62.0 45 66.7
Rhsim07G0008600 Rhododendron simsii HOM05D001461 ORTHO05D002801 3.4e-08 62.0 45 64.4
GSVIVG01027031001 Vitis vinifera HOM05D001461 ORTHO05D002801 4.4e-08 61.6 42 71.4
CSS0005587 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D002801 5.7e-08 61.2 42 71.4
CSS0041816 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D002801 5.7e-08 61.2 42 71.4
Cfa012280 Carpinus fangiana HOM05D001461 ORTHO05D002801 5.7e-08 61.2 45 66.7
Solyc08g081830.3 Solanum lycopersicum HOM05D001461 ORTHO05D002801 5.7e-08 61.2 45 64.4
Sopen08g030120 Solanum pennellii HOM05D001461 ORTHO05D002801 5.7e-08 61.2 45 64.4
TAR636G2610 Trochodendron aralioides HOM05D001461 ORTHO05D002801 5.7e-08 61.2 42 71.4
vmacro13210 Vaccinium macrocarpon HOM05D001461 ORTHO05D002801 5.7e-08 61.2 45 64.4
MSTRG.11943 Avicennia marina HOM05D001461 ORTHO05D002801 7.5e-08 60.8 47 59.6
Nitab4.5_0000223g0010 Nicotiana tabacum HOM05D001461 ORTHO05D002801 7.5e-08 60.8 45 64.4
SalBow1G7989 Salvia bowleyana HOM05D001461 ORTHO05D002801 7.5e-08 60.8 45 64.4
Sed0019429 Sechium edule HOM05D001461 ORTHO05D002801 7.5e-08 60.8 42 69.0
MSTRG.25649 Avicennia marina HOM05D001461 ORTHO05D002801 9.8e-08 60.5 45 66.7
Cpa.g.sc184.5 Carica papaya HOM05D001461 ORTHO05D002801 9.8e-08 60.5 45 66.7
ECA246G2267 Erigeron canadensis HOM05D001461 ORTHO05D002801 9.8e-08 60.5 45 66.7
Potri.002G166600 Populus trichocarpa HOM05D001461 ORTHO05D002801 9.8e-08 60.5 45 68.9
arahy.Tifrunner.gnm1.ann1.2M8W8F Arachis hypogaea HOM05D001461 ORTHO05D002801 1.3e-07 60.1 42 69.0
arahy.Tifrunner.gnm1.ann1.CSBF71 Arachis hypogaea HOM05D001461 ORTHO05D002801 1.3e-07 60.1 42 69.0
CSS0021876 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D002801 1.3e-07 60.1 41 70.7
CANSAT21G2284 Cannabis sativa HOM05D001461 ORTHO05D002801 1.3e-07 60.1 45 64.4
COL.COLO4_06355 Corchorus olitorius HOM05D001461 ORTHO05D002801 1.3e-07 60.1 45 64.4
COL.COLO4_21751 Corchorus olitorius HOM05D001461 ORTHO05D002801 1.3e-07 60.1 42 69.0
Haze_08704 Corylus avellana HOM05D001461 ORTHO05D002801 1.3e-07 60.1 45 64.4
Dinv32541 Davidia involucrata HOM05D001461 ORTHO05D002801 1.3e-07 60.1 42 69.0
Duzib084G1414 Durio zibethinus HOM05D001461 ORTHO05D002801 1.3e-07 60.1 42 69.0
Lj2C174T8 Lonicera japonica HOM05D001461 ORTHO05D002801 1.3e-07 60.1 45 64.4
QL04p057867 Quercus lobata HOM05D001461 ORTHO05D002801 1.3e-07 60.1 41 68.3
Sabra01G0072200 Salix brachista HOM05D001461 ORTHO05D002801 1.3e-07 60.1 45 64.4
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 1.3e-07 60.1 42 71.4
ClCG01G002120 Citrullus lanatus HOM05D001461 ORTHO05D002801 1.7e-07 59.7 42 69.0
MELO3C005731.2 Cucumis melo HOM05D001461 ORTHO05D002801 1.7e-07 59.7 42 69.0
CsaV3_5G002240 Cucumis sativus L. HOM05D001461 ORTHO05D002801 1.7e-07 59.7 42 69.0
HanXRQChr10g0292751 Helianthus annuus HOM05D001461 ORTHO05D002801 1.7e-07 59.7 45 66.7
Nn7g37348 Nelumbo nucifera HOM05D001461 ORTHO05D002801 1.7e-07 59.7 42 66.7
Potri.001G096200 Populus trichocarpa HOM05D001461 ORTHO05D002801 1.7e-07 59.7 41 70.7
Thecc.03G290400 Theobroma cacao HOM05D001461 ORTHO05D002801 1.7e-07 59.7 42 69.0
TPR.G6700 Trifolium pratense HOM05D001461 ORTHO05D002801 1.7e-07 59.7 42 69.0
TWI15G0184 Tripterygium wilfordii HOM05D001461 ORTHO05D002801 1.7e-07 59.7 42 69.0
CiPaw.11G126200 Carya illinoinensis HOM05D001461 ORTHO05D002801 2.2e-07 59.3 45 64.4
CiPaw.12G086800 Carya illinoinensis HOM05D001461 ORTHO05D002801 2.2e-07 59.3 45 64.4
Ciclev10019168m.g Citrus clementina HOM05D001461 ORTHO05D002801 2.2e-07 59.3 42 69.0
Sabra02G0145000 Salix brachista HOM05D001461 ORTHO05D002801 2.2e-07 59.3 45 66.7
Sabra03G0097200 Salix brachista HOM05D001461 ORTHO05D002801 2.2e-07 59.3 45 66.7
Hund11423 Selenicereus undatus HOM05D001461 ORTHO05D002801 2.2e-07 59.3 45 62.2
Duzib068G0549 Durio zibethinus HOM05D001461 ORTHO05D002801 2.8e-07 58.9 42 69.0
Actinidia04222 Actinidia chinensis HOM05D001461 ORTHO05D002801 3.7e-07 58.5 45 62.2
Cfa003847 Carpinus fangiana HOM05D001461 ORTHO05D002801 3.7e-07 58.5 41 68.3
Haze_15603 Corylus avellana HOM05D001461 ORTHO05D002801 3.7e-07 58.5 41 68.3
Duzib205G0346 Durio zibethinus HOM05D001461 ORTHO05D002801 3.7e-07 58.5 42 69.0
Gohir.A12G232520 Gossypium hirsutum HOM05D001461 ORTHO05D002801 3.7e-07 58.5 41 68.3
Gohir.D12G235200 Gossypium hirsutum HOM05D001461 ORTHO05D002801 3.7e-07 58.5 41 68.3
Gorai.008G251400 Gossypium raimondii HOM05D001461 ORTHO05D002801 3.7e-07 58.5 41 68.3
Medtr5g009750 Medicago truncatula HOM05D001461 ORTHO05D002801 3.7e-07 58.5 42 66.7
PSO384G2039 Papaver somniferum HOM05D001461 ORTHO05D002801 3.7e-07 58.5 40 70.0
FvH4_5g03740 Fragaria vesca HOM05D001461 ORTHO05D002801 4.8e-07 58.2 41 68.3
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 4.8e-07 58.2 41 68.3
FAN08G1711 Fragaria x ananassa HOM05D001461 ORTHO05D002801 4.8e-07 58.2 41 68.3
FAN13G0022 Fragaria x ananassa HOM05D001461 ORTHO05D002801 4.8e-07 58.2 41 68.3
FAN13G0326 Fragaria x ananassa HOM05D001461 ORTHO05D002801 4.8e-07 58.2 41 68.3
FAN18G4162 Fragaria x ananassa HOM05D001461 ORTHO05D002801 4.8e-07 58.2 41 68.3
Glyma.07G061300 Glycine max HOM05D001461 ORTHO05D002801 4.8e-07 58.2 44 65.9
Oeu063050.1 Olea europaea HOM05D001461 ORTHO05D002801 4.8e-07 58.2 45 62.2
PSO135G0588 Papaver somniferum HOM05D001461 ORTHO05D002801 4.8e-07 58.2 43 65.1
RcHm_v2.0_Chr7g0195911 Rosa chinensis HOM05D001461 ORTHO05D002801 4.8e-07 58.2 41 68.3
Ca_24528_v3 Cicer arietinum L. HOM05D001461 ORTHO05D002801 6.3e-07 57.8 42 66.7
Ciclev10019237m.g Citrus clementina HOM05D001461 ORTHO05D002801 6.3e-07 57.8 45 62.2
HanXRQChr17g0535511 Helianthus annuus HOM05D001461 ORTHO05D002801 6.3e-07 57.8 45 64.4
Lj3A338T40 Lonicera japonica HOM05D001461 ORTHO05D002801 6.3e-07 57.8 41 68.3
Lj7A505T29 Lonicera japonica HOM05D001461 ORTHO05D002801 6.3e-07 57.8 41 68.3
LjContig00312_ERROPOS870357g0013551 Lotus japonicus HOM05D001461 ORTHO05D002801 6.3e-07 57.8 42 69.0
Nitab4.5_0000305g0310 Nicotiana tabacum HOM05D001461 ORTHO05D002801 6.3e-07 57.8 40 70.0
QL02p032149 Quercus lobata HOM05D001461 ORTHO05D002801 6.3e-07 57.8 42 66.7
QL10p040340 Quercus lobata HOM05D001461 ORTHO05D002801 6.3e-07 57.8 42 66.7
Sc01g0010010 Simmondsia chinensis HOM05D001461 ORTHO05D002801 6.3e-07 57.8 42 64.3
Gohir.A08G091500 Gossypium hirsutum HOM05D001461 ORTHO05D002801 8.3e-07 57.4 41 68.3
MD00G1094600 Malus domestica HOM05D001461 ORTHO05D002801 8.3e-07 57.4 42 64.3
TAR629G2645 Trochodendron aralioides HOM05D001461 ORTHO05D002801 8.3e-07 57.4 37 73.0
Ah.12g052170 Amaranthus hybridus HOM05D001461 ORTHO05D002801 1.1e-06 57.0 42 61.9
MD06G1098100 Malus domestica HOM05D001461 ORTHO05D002801 1.1e-06 57.0 41 65.9
VMungo1215G2718 Vigna mungo HOM05D001461 ORTHO05D002801 1.1e-06 57.0 38 71.1
Cpa.g.sc122.17 Carica papaya HOM05D001461 ORTHO05D002801 1.4e-06 56.6 42 64.3
Glyma.11G019800 Glycine max HOM05D001461 ORTHO05D002801 1.4e-06 56.6 37 73.0
Ah.05g179980 Amaranthus hybridus HOM05D001461 ORTHO05D002801 1.8e-06 56.2 41 63.4
Peaxi162Scf01012g00235 Petunia axillaris HOM05D001461 ORTHO05D002801 1.8e-06 56.2 40 67.5
AUR62019784 Chenopodium quinoa HOM05D001461 ORTHO05D002801 2.4e-06 55.8 42 59.5
Lj3g0014894 Lotus japonicus HOM05D001461 ORTHO05D002801 2.4e-06 55.8 42 66.7
MBI06_g04296_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D002801 2.4e-06 55.8 41 63.4
Nitab4.5_0004613g0060 Nicotiana tabacum HOM05D001461 ORTHO05D002801 2.4e-06 55.8 91 39.6
Os02g0260500 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D002801 2.4e-06 55.8 45 60.0
Phvul.002G161700 Phaseolus vulgaris HOM05D001461 ORTHO05D002801 2.4e-06 55.8 38 68.4
EL10Ac5g12861 Beta vulgaris HOM05D001461 ORTHO05D002801 3.1e-06 55.5 42 59.5
AUR62010788 Chenopodium quinoa HOM05D001461 ORTHO05D002801 3.1e-06 55.5 42 59.5
Glyma.01G223700 Glycine max HOM05D001461 ORTHO05D002801 3.1e-06 55.5 37 70.3
Lsat_1_v5_gn_3_9661 Lactuca sativa HOM05D001461 ORTHO05D002801 3.1e-06 55.5 45 57.8
MBI07_g06329_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D002801 3.1e-06 55.5 42 61.9
Sc23g0002410 Simmondsia chinensis HOM05D001461 ORTHO05D002801 3.1e-06 55.5 42 61.9
SGA_v2.0_scaffold173G39117 Striga asiatica HOM05D001461 ORTHO05D002801 3.1e-06 55.5 41 63.4
EL10Ac1g00328 Beta vulgaris HOM05D001461 ORTHO05D002801 4.1e-06 55.1 41 63.4
Glyma.16G029900 Glycine max HOM05D001461 ORTHO05D002801 4.1e-06 55.1 44 61.4
Lalb_Chr05g0211671 Lupinus albus HOM05D001461 ORTHO05D002801 4.1e-06 55.1 42 64.3
Rhsim02G0238800 Rhododendron simsii HOM05D001461 ORTHO05D002801 4.1e-06 55.1 41 63.4
Thecc.01G349200 Theobroma cacao HOM05D001461 ORTHO05D002801 4.1e-06 55.1 41 61.0
Gohir.D08G133400 Gossypium hirsutum HOM05D001461 ORTHO05D002801 5.4e-06 54.7 41 65.9
Gorai.004G136500 Gossypium raimondii HOM05D001461 ORTHO05D002801 5.4e-06 54.7 41 65.9
Gohir.A11G093500 Gossypium hirsutum HOM05D001461 ORTHO05D002801 7.0e-06 54.3 45 57.8
Gohir.D11G098500 Gossypium hirsutum HOM05D001461 ORTHO05D002801 7.0e-06 54.3 45 57.8
Gorai.007G104700 Gossypium raimondii HOM05D001461 ORTHO05D002801 7.0e-06 54.3 45 57.8
PGR031G2389 Punica granatum HOM05D001461 ORTHO05D002801 7.0e-06 54.3 44 61.4
vmacro11422 Vaccinium macrocarpon HOM05D001461 ORTHO05D002801 7.0e-06 54.3 45 57.8
VMungo0331G0912 Vigna mungo HOM05D001461 ORTHO05D002801 7.0e-06 54.3 45 64.4
CAN.G78.150 Capsicum annuum HOM05D001461 ORTHO05D002801 9.1e-06 53.9 40 67.5
Duzib133G1464 Durio zibethinus HOM05D001461 ORTHO05D002801 9.1e-06 53.9 45 57.8
Duzib138G1087 Durio zibethinus HOM05D001461 ORTHO05D002801 9.1e-06 53.9 44 56.8
Prupe.5G111800 Prunus persica HOM05D001461 ORTHO05D002801 9.1e-06 53.9 41 63.4
TWI81G1025 Tripterygium wilfordii HOM05D001461 ORTHO05D002801 9.1e-06 53.9 41 63.4


User provided reference genes

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