Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 4.6e-272 940.6 486 100.0
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 6.9e-175 617.8 456 73.9
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 5.5e-172 608.2 475 71.4
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 1.1e-151 540.8 453 67.1
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 2.6e-150 536.2 478 64.2
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 2.7e-147 526.2 476 62.6
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 3.9e-146 522.3 554 58.5
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 2.0e-142 510.0 473 60.0
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 2.2e-141 506.5 510 59.2
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 3.6e-139 499.2 468 61.3
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 7.9e-139 498.0 481 60.1
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 1.0e-138 497.7 475 60.2
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 3.9e-138 495.7 475 60.2
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 6.3e-136 488.4 475 60.8
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 1.4e-135 487.3 475 60.8
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 1.2e-134 484.2 478 60.7
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 1.5e-132 477.2 521 57.4
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 2.1e-131 473.4 488 57.4
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 2.2e-125 453.4 523 57.0
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 8.5e-125 451.4 482 56.8
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 6.8e-122 441.8 497 56.3
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 6.8e-122 441.8 497 55.3
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.3e-120 437.6 486 55.3
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 2.2e-120 436.8 493 55.2
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 4.1e-119 432.6 495 55.6
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 5.4e-119 432.2 488 54.3
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 9.1e-119 431.4 495 54.7
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 1.6e-118 430.6 461 57.3
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 3.5e-118 429.5 419 59.9
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 1.0e-117 427.9 491 54.0
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 1.3e-117 427.6 466 54.9
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 2.3e-117 426.8 451 56.8
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 2.9e-117 426.4 514 52.7
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 6.5e-117 425.2 489 54.4
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.1e-116 424.5 503 53.5
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 1.2e-115 421.0 477 52.8
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 1.2e-115 421.0 468 54.9
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 1.6e-115 420.6 479 55.9
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 3.6e-115 419.5 490 54.1
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 8.0e-115 418.3 479 55.3
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 8.0e-115 418.3 502 52.6
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 8.0e-115 418.3 496 53.0
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 1.4e-114 417.5 489 53.8
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 1.4e-114 417.5 458 53.3
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 5.2e-114 415.6 570 48.8
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 6.8e-114 415.2 487 55.0
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 8.8e-114 414.8 492 53.7
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 1.2e-113 414.5 448 55.6
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 1.2e-113 414.5 471 52.9
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 1.5e-113 414.1 489 54.6
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 1.5e-113 414.1 563 48.7
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 4.4e-113 412.5 421 58.7
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 1.7e-112 410.6 467 54.0
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.8e-112 409.8 505 51.9
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 3.7e-112 409.5 438 55.7
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 3.7e-112 409.5 464 53.0
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 1.1e-111 407.9 477 53.7
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 5.4e-111 405.6 547 48.6
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 9.2e-111 404.8 439 55.6
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 1.2e-110 404.4 492 53.5
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 1.2e-110 404.4 485 53.2
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 1.2e-110 404.4 466 53.6
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 7.8e-110 401.7 480 52.7
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 8.6e-109 398.3 325 67.7
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 1.1e-108 397.9 542 49.6
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 1.2e-107 394.4 501 48.9
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 1.6e-107 394.0 463 53.3
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 2.1e-107 393.7 521 49.9
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 4.7e-107 392.5 464 53.0
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 4.7e-107 392.5 464 53.0
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 8.0e-107 391.7 476 50.8
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 8.9e-106 388.3 461 52.5
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 4.4e-105 386.0 517 49.1
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 7.5e-105 385.2 482 50.6
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 1.7e-104 384.0 467 51.0
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 1.7e-104 384.0 467 51.2
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 1.7e-104 384.0 467 51.2
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 2.9e-104 383.3 367 59.9
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 8.3e-104 381.7 507 49.1
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 1.1e-103 381.3 468 51.3
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 1.4e-103 380.9 477 51.2
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 3.2e-103 379.8 481 51.6
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 9.2e-103 378.3 473 49.9
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 3.9e-101 372.9 474 52.3
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 1.1e-100 371.3 537 46.9
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 3.6e-99 366.3 582 44.8
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 6.2e-99 365.5 559 46.3
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 1.1e-98 364.8 548 46.5
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 5.2e-98 362.5 518 46.5
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 6.8e-98 362.1 539 44.9
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 1.5e-97 360.9 540 45.2
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 1.4e-95 354.4 495 48.1
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 8.1e-91 338.6 420 50.7
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 5.8e-89 332.4 373 53.4
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 1.2e-83 314.7 614 39.7
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 5.1e-77 292.7 283 57.6
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 5.2e-74 282.7 301 54.2
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 2.6e-73 280.4 620 35.5
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 8.4e-72 275.4 246 62.6
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 2.4e-71 273.9 241 63.5
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 5.1e-69 266.2 245 62.9
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 1.7e-64 251.1 314 47.5
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.8e-58 231.1 255 55.3
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 2.4e-58 230.7 250 56.0
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 6.4e-56 222.6 288 50.3
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.0e-48 198.7 243 50.6
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 1.3e-48 198.4 504 34.1
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 3.8e-48 196.8 178 61.2
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 4.3e-44 183.3 233 53.2
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 6.9e-42 176.0 242 48.8
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 5.9e-41 172.9 233 50.2
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 3.0e-37 160.6 188 53.2
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 8.2e-35 152.5 248 44.8
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 1.3e-32 145.2 129 61.2
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 1.4e-31 141.7 117 67.5
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 1.4e-29 135.2 137 51.8
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 3.9e-29 133.7 185 44.3
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 1.1e-28 132.1 107 69.2
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 7.4e-20 102.8 355 27.9
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 5.3e-18 96.7 206 37.9
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 1.5e-12 78.6 70 61.4
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 9.7e-12 75.9 124 46.8
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 8.2e-11 72.8 65 53.8
HPP92_007750 Vanilla planifolia HOM05D006007 ORTHO05D007518 4.1e-10 70.5 75 56.0
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 9.1e-10 69.3 127 44.1
Cpa.g.sc14.174 Carica papaya HOM05D006007 ORTHO05D007518 1.9e-07 61.6 107 38.3
Actinidia06683 Actinidia chinensis HOM05D000032 ORTHO05D005217 2.1e-06 58.2 148 33.1
Actinidia03820 Actinidia chinensis HOM05D000032 ORTHO05D005217 4.7e-06 57.0 148 33.1
THA.LOC104806094 Tarenaya hassleriana HOM05D000032 ORTHO05D005217 6.1e-06 56.6 159 30.8


User provided reference genes

Program Settings