Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.2e-72 275.4 129 100.0
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.2e-67 258.8 129 95.3
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.4e-66 256.1 129 95.3
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 6.1e-46 187.6 129 67.4
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 4.0e-37 158.3 125 58.4
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 3.4e-36 155.2 124 61.3
SalBow1G3820 Salvia bowleyana HOM05D004542 ORTHO05D005380 6.3e-35 151.0 80 92.5
SalBow1G0857 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.1e-34 150.2 80 90.0
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 4.1e-34 148.3 133 56.4
SalBow1G4992 Salvia bowleyana HOM05D004542 ORTHO05D005380 9.1e-34 147.1 80 90.0
SalBow1G6948 Salvia bowleyana HOM05D004542 ORTHO05D005380 9.1e-34 147.1 80 90.0
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 2.7e-33 145.6 130 57.7
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 5.9e-33 144.4 113 61.1
SalBow1G6351 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.0e-32 143.7 79 87.3
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 1.7e-32 142.9 130 57.7
SalBow1G0501 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.9e-32 142.1 80 87.5
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 1.9e-31 139.4 130 56.2
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 1.9e-31 139.4 128 57.0
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 3.2e-31 138.7 110 61.8
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 3.2e-31 138.7 130 56.9
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 4.2e-31 138.3 130 56.9
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 9.5e-31 137.1 118 57.6
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.0e-29 133.7 61 98.4
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 2.3e-29 132.5 127 58.3
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 5.2e-29 131.3 133 54.1
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 5.2e-29 131.3 133 54.1
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 1.2e-28 130.2 127 50.4
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 1.7e-27 126.3 132 53.0
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 2.8e-27 125.6 126 48.4
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 3.7e-27 125.2 126 49.2
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 8.3e-27 124.0 126 54.0
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 1.1e-26 123.6 128 53.9
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 3.1e-26 122.1 122 54.1
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 3.1e-26 122.1 116 56.0
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 4.1e-26 121.7 119 51.3
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 4.1e-26 121.7 119 51.3
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 9.2e-26 120.6 132 51.5
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 9.2e-26 120.6 127 51.2
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 9.2e-26 120.6 110 56.4
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 1.2e-25 120.2 120 53.3
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 2.0e-25 119.4 108 55.6
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 2.0e-25 119.4 121 51.2
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 2.0e-25 119.4 117 53.0
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 2.0e-25 119.4 134 53.0
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 2.7e-25 119.0 136 48.5
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 2.7e-25 119.0 123 52.8
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 3.5e-25 118.6 122 51.6
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 3.5e-25 118.6 130 47.7
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 3.5e-25 118.6 120 55.0
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 4.5e-25 118.2 142 47.2
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 7.8e-25 117.5 127 52.0
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 7.8e-25 117.5 114 54.4
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 7.8e-25 117.5 89 61.8
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 7.8e-25 117.5 119 53.8
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 7.8e-25 117.5 133 47.4
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 7.8e-25 117.5 133 47.4
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 7.8e-25 117.5 117 51.3
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 1.0e-24 117.1 120 52.5
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 1.0e-24 117.1 114 56.1
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 1.3e-24 116.7 119 50.4
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 1.3e-24 116.7 119 52.1
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 1.7e-24 116.3 114 50.0
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 1.7e-24 116.3 114 54.4
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 2.3e-24 115.9 96 57.3
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 2.3e-24 115.9 96 57.3
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 2.3e-24 115.9 133 48.9
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 2.3e-24 115.9 119 55.5
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 2.9e-24 115.5 116 53.4
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 2.9e-24 115.5 135 48.9
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 2.9e-24 115.5 129 51.2
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 3.8e-24 115.2 93 59.1
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 3.8e-24 115.2 135 49.6
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 3.8e-24 115.2 125 50.4
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 6.6e-24 114.4 97 57.7
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 6.6e-24 114.4 138 45.7
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 8.6e-24 114.0 84 63.1
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 8.6e-24 114.0 84 63.1
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 8.6e-24 114.0 89 61.8
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 1.1e-23 113.6 100 56.0
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.1e-23 113.6 86 61.6
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.9e-23 112.8 84 63.1
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 1.9e-23 112.8 121 48.8
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 1.9e-23 112.8 123 52.0
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 2.5e-23 112.5 112 54.5
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 2.5e-23 112.5 120 47.5
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 2.5e-23 112.5 135 48.1
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 3.3e-23 112.1 114 50.9
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 3.3e-23 112.1 120 46.7
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 3.3e-23 112.1 124 48.4
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 3.3e-23 112.1 90 58.9
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 7.3e-23 110.9 103 52.4
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 7.3e-23 110.9 78 64.1
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 7.3e-23 110.9 126 49.2
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 9.5e-23 110.5 119 50.4
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 1.2e-22 110.2 117 51.3
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 1.6e-22 109.8 136 43.4
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 2.1e-22 109.4 121 47.1
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 2.1e-22 109.4 121 47.1
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 2.1e-22 109.4 136 42.6
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 2.1e-22 109.4 62 75.8
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 2.1e-22 109.4 145 43.4
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 2.8e-22 109.0 138 42.8
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 2.8e-22 109.0 84 61.9
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 3.6e-22 108.6 95 55.8
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 6.1e-22 107.8 92 59.8
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 1.0e-21 107.1 122 44.3
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 1.0e-21 107.1 63 73.0
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 1.8e-21 106.3 104 51.0
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 1.8e-21 106.3 85 55.3
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 1.8e-21 106.3 136 42.6
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 2.3e-21 105.9 149 43.0
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 3.0e-21 105.5 88 56.8
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 3.0e-21 105.5 121 43.8
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 3.0e-21 105.5 69 66.7
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 5.2e-21 104.8 94 53.2
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 1.2e-20 103.6 77 64.9
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 2.6e-20 102.4 129 44.2
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 4.4e-20 101.7 63 66.7
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 5.7e-20 101.3 90 50.0
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 5.7e-20 101.3 64 67.2
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 9.8e-20 100.5 60 68.3
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 9.8e-20 100.5 62 67.7
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 2.9e-19 99.0 60 71.7
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 4.9e-19 98.2 58 72.4
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 1.4e-18 96.7 161 37.3
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 2.4e-18 95.9 107 52.3
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 2.4e-18 95.9 107 52.3
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 3.2e-18 95.5 109 52.3
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 5.4e-18 94.7 108 49.1
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 5.0e-16 88.2 102 49.0
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 1.1e-15 87.0 52 73.1
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 1.5e-15 86.7 60 63.3
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 4.3e-15 85.1 52 67.3
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 4.3e-15 85.1 81 54.3
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 5.6e-15 84.7 50 70.0
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 5.6e-15 84.7 121 41.3
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 2.8e-14 82.4 108 47.2
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 1.8e-13 79.7 103 45.6
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 3.1e-13 79.0 104 48.1
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 5.2e-13 78.2 54 64.8
Nitab4.5_0000014g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.3e-11 73.6 145 35.9
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 1.3e-11 73.6 105 46.7
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 2.2e-11 72.8 97 44.3
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 2.2e-11 72.8 48 58.3
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 3.7e-11 72.0 111 42.3
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 7.0e-10 67.8 38 76.3
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 9.2e-10 67.4 40 70.0
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 1.6e-09 66.6 87 44.8
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 3.9e-08 62.0 59 50.8
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 3.3e-07 58.9 50 52.0
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 1.6e-06 56.6 37 67.6
SEGI_34151 Sequoiadendron giganteum HOM05D004542 ORTHO05D005380 8.1e-06 54.3 36 66.7


User provided reference genes

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