Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 4.2e-77 291.2 137 100.0
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 6.7e-51 204.1 125 80.8
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 8.7e-51 203.8 125 80.8
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 1.1e-50 203.4 124 80.6
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 2.5e-50 202.2 95 100.0
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 2.5e-50 202.2 95 100.0
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.5e-50 202.2 95 100.0
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.5e-50 202.2 95 100.0
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.5e-50 202.2 95 100.0
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 2.5e-50 202.2 95 100.0
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 4.3e-50 201.4 99 96.0
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.3e-49 199.9 125 80.0
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 2.4e-48 195.7 94 97.9
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 2.4e-48 195.7 95 97.9
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 2.4e-48 195.7 95 97.9
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 2.4e-48 195.7 95 97.9
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 2.4e-48 195.7 95 97.9
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 3.1e-48 195.3 125 79.2
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 4.1e-48 194.9 94 96.8
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 4.1e-48 194.9 95 97.9
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 9.0e-48 193.7 95 96.8
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 9.0e-48 193.7 95 96.8
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 9.0e-48 193.7 95 96.8
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 9.0e-48 193.7 95 96.8
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 9.0e-48 193.7 95 94.7
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 2.0e-47 192.6 95 96.8
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 2.6e-47 192.2 95 93.7
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 7.7e-47 190.7 95 95.8
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.0e-46 190.3 92 95.7
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 2.9e-46 188.7 95 93.7
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 2.9e-46 188.7 95 95.8
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 3.8e-46 188.3 94 95.7
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 6.5e-46 187.6 95 94.7
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 1.1e-45 186.8 95 94.7
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 2.5e-45 185.7 128 72.7
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.2e-45 185.3 125 73.6
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 7.2e-45 184.1 95 92.6
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 7.2e-45 184.1 95 92.6
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 7.2e-45 184.1 95 92.6
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 7.2e-45 184.1 95 92.6
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 7.2e-45 184.1 95 92.6
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 7.2e-45 184.1 95 92.6
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 7.2e-45 184.1 95 92.6
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 1.6e-44 183.0 94 93.6
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 1.6e-44 183.0 91 95.6
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 2.7e-44 182.2 95 91.6
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 2.7e-44 182.2 95 91.6
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 3.6e-44 181.8 91 94.5
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 4.6e-44 181.4 91 93.4
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 4.6e-44 181.4 91 93.4
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 6.1e-44 181.0 92 90.2
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.4e-43 179.9 91 92.3
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 3.9e-43 178.3 91 92.3
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 5.1e-43 177.9 91 92.3
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 6.7e-43 177.6 94 91.5
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 1.1e-42 176.8 91 92.3
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 7.4e-42 174.1 130 70.8
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 3.7e-41 171.8 95 89.5
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 3.7e-41 171.8 95 89.5
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 3.7e-41 171.8 95 89.5
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 3.7e-41 171.8 95 89.5
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 4.8e-41 171.4 94 89.4
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 8.2e-41 170.6 95 88.4
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 1.8e-40 169.5 273 39.2
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 3.1e-40 168.7 95 87.4
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 7.7e-39 164.1 95 84.2
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 1.1e-37 160.2 84 92.9
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 1.6e-36 156.4 89 84.3
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 2.1e-36 156.0 85 88.2
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 1.1e-34 150.2 91 82.4
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 5.7e-34 147.9 83 88.0
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 7.7e-31 137.5 80 80.0
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.3e-30 136.7 64 100.0
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 1.7e-30 136.3 71 88.7
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 2.5e-29 132.5 68 91.2
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 2.5e-29 132.5 89 75.3
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 4.2e-29 131.7 71 90.1
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 5.5e-29 131.3 105 66.7
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 3.6e-28 128.6 100 68.0
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 2.0e-26 122.9 78 79.5
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 3.7e-25 118.6 61 88.5
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.8e-24 116.3 80 71.2
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.8e-24 116.3 80 71.2
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 9.1e-24 114.0 128 51.6
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 1.5e-21 106.7 53 90.6
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 7.2e-21 104.4 92 58.7
SalBow8G0065 Salvia bowleyana HOM05D047022 ORTHO05D005492 7.2e-13 77.8 70 58.6
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 8.0e-12 74.3 69 53.6
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 1.0e-11 73.9 44 79.5
TPR.G9938 Trifolium pratense HOM05D004537 ORTHO05D005492 1.2e-10 70.5 46 76.1
SHI30018 Sapria himalayana HOM05D004537 ORTHO05D005492 7.5e-10 67.8 56 66.1
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 5.9e-07 58.2 70 48.6
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 7.7e-07 57.8 57 52.6
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 7.7e-07 57.8 27 85.2


User provided reference genes

Program Settings