Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 1.3e-224 782.7 399 100.0
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 2.2e-142 509.6 390 68.2
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 4.8e-142 508.4 391 69.1
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 6.8e-128 461.5 392 59.7
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 2.2e-126 456.4 390 59.2
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 9.1e-125 451.1 393 59.5
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 1.5e-122 443.7 392 60.7
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.2e-122 442.2 390 57.9
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 4.2e-122 442.2 392 58.4
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 9.5e-122 441.0 390 58.5
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.7e-121 438.7 387 57.9
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 6.1e-121 438.3 391 57.8
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 1.0e-120 437.6 391 57.5
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 4.0e-120 435.6 391 58.1
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 8.9e-120 434.5 390 57.4
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 8.9e-120 434.5 403 56.3
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 8.9e-120 434.5 391 57.5
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 1.2e-119 434.1 391 57.0
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 2.6e-119 433.0 391 57.5
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.8e-117 426.8 405 55.8
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.5e-114 417.2 392 55.4
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 1.9e-114 416.8 391 53.5
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.9e-114 416.8 392 55.4
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.5e-114 416.4 392 55.4
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 3.3e-114 416.0 392 55.9
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 1.4e-112 410.6 393 53.9
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 4.0e-112 409.1 410 54.6
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 3.4e-111 406.0 389 54.2
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 5.8e-111 405.2 389 53.2
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 1.7e-110 403.7 389 54.2
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 3.7e-110 402.5 387 53.0
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 1.1e-109 401.0 390 53.6
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 5.4e-109 398.7 500 48.4
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.6e-108 397.1 396 52.0
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 2.0e-108 396.7 390 51.0
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 2.0e-108 396.7 390 51.0
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 7.8e-108 394.8 389 53.2
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 3.0e-107 392.9 344 58.7
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 1.9e-106 390.2 391 51.4
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 3.3e-106 389.4 392 51.8
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 4.7e-105 385.6 399 51.4
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 4.7e-105 385.6 390 53.3
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 8.1e-105 384.8 392 50.5
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 2.0e-103 380.2 392 50.8
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 3.4e-103 379.4 394 51.5
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 5.8e-103 378.6 391 51.2
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 9.8e-103 377.9 398 50.5
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 1.7e-102 377.1 390 52.3
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 2.2e-102 376.7 391 50.9
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 2.4e-101 373.2 394 49.5
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 3.2e-101 372.9 392 49.7
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 3.2e-101 372.9 389 52.2
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 5.4e-101 372.1 391 50.1
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 1.2e-100 370.9 391 50.9
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 1.2e-100 370.9 392 50.5
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 4.6e-100 369.0 393 50.1
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 6.0e-100 368.6 391 50.9
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 7.8e-100 368.2 387 52.7
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 7.8e-100 368.2 389 52.4
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 7.8e-100 368.2 390 51.3
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 7.8e-100 368.2 394 49.2
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.3e-99 367.5 339 58.1
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 2.3e-99 366.7 390 51.0
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 3.9e-99 365.9 389 52.4
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 5.1e-99 365.5 393 49.1
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 7.3e-98 361.7 391 48.6
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.6e-97 360.5 387 51.7
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 3.6e-97 359.4 389 50.6
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 6.2e-97 358.6 354 52.3
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 6.2e-97 358.6 393 48.9
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 8.1e-97 358.2 394 48.2
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 4.4e-95 352.4 392 49.0
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 7.6e-95 351.7 397 47.1
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 6.4e-94 348.6 399 48.1
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 6.4e-94 348.6 340 53.5
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 2.4e-93 346.7 392 46.7
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 3.2e-93 346.3 395 46.8
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 3.2e-93 346.3 393 47.8
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 4.1e-93 345.9 340 53.8
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.6e-92 344.0 402 47.0
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 2.1e-92 343.6 392 46.9
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 6.0e-92 342.0 392 46.7
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 7.8e-92 341.7 392 45.7
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 3.0e-91 339.7 398 46.7
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 3.9e-91 339.3 430 43.7
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 3.9e-91 339.3 427 44.5
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 2.5e-90 336.7 392 45.2
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 3.3e-90 336.3 373 48.8
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 4.3e-90 335.9 390 44.6
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 4.3e-90 335.9 391 46.3
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 1.6e-89 334.0 391 45.8
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 8.1e-89 331.6 391 44.2
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 8.1e-89 331.6 393 44.5
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 2.4e-88 330.1 393 45.3
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 2.4e-88 330.1 394 45.4
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 6.8e-88 328.6 393 45.3
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 8.9e-88 328.2 392 45.2
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 1.5e-87 327.4 391 44.0
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 2.0e-87 327.0 407 44.7
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 7.6e-87 325.1 393 44.8
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 2.2e-86 323.6 393 44.8
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 3.8e-86 322.8 394 43.7
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 4.9e-86 322.4 336 50.9
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 6.4e-86 322.0 393 44.3
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 4.2e-85 319.3 392 45.2
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 5.4e-85 318.9 393 44.0
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 5.4e-85 318.9 391 44.0
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 5.4e-85 318.9 395 44.6
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 1.6e-84 317.4 392 44.1
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 6.0e-84 315.5 378 43.4
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 6.0e-84 315.5 389 44.0
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 3.0e-83 313.2 507 38.9
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 6.6e-83 312.0 403 43.2
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 8.7e-83 311.6 391 42.2
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 1.5e-82 310.8 430 41.6
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 7.3e-82 308.5 427 41.2
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 1.1e-80 304.7 385 42.9
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 1.1e-80 304.7 307 50.8
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 4.0e-80 302.8 389 44.0
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 1.2e-79 301.2 529 36.9
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 2.0e-79 300.4 379 43.0
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 2.0e-79 300.4 380 45.8
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 5.8e-79 298.9 316 50.3
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 7.6e-79 298.5 379 42.7
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 3.8e-78 296.2 393 42.7
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 3.8e-78 296.2 209 72.2
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.4e-77 294.3 335 48.4
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 2.5e-74 283.5 340 45.9
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 2.1e-73 280.4 391 40.2
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.4e-71 273.1 210 64.8
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 3.2e-69 266.5 588 33.5
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 6.7e-67 258.8 207 62.8
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 8.7e-67 258.5 207 62.8
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.3e-65 254.6 211 62.1
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 1.4e-64 251.1 341 41.1
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 2.6e-63 246.9 324 44.8
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 7.6e-63 245.4 326 41.7
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 7.9e-60 235.3 226 56.6
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 2.5e-58 230.3 410 35.9
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.3e-57 228.0 228 52.6
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.6e-57 227.6 164 69.5
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.8e-57 226.9 228 52.2
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 4.1e-56 223.0 174 65.5
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.4e-55 219.9 162 66.7
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.0e-54 218.4 174 64.4
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.3e-54 218.0 174 64.4
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 5.0e-54 216.1 165 64.2
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 8.4e-54 215.3 168 65.5
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.4e-53 214.5 335 38.2
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 3.9e-51 206.5 369 33.6
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.1e-50 204.9 154 66.2
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 5.7e-50 202.6 174 62.6
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 2.8e-49 200.3 403 32.3
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.8e-48 197.6 408 33.1
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 2.6e-47 193.7 407 32.7
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 3.4e-47 193.4 407 32.7
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.5e-46 188.7 214 50.9
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 2.5e-45 187.2 396 31.1
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 7.2e-45 185.7 160 57.5
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 9.4e-45 185.3 160 57.5
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 2.7e-44 183.7 226 44.7
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 2.8e-41 173.7 312 37.8
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 3.4e-39 166.8 132 63.6
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 4.5e-39 166.4 398 29.6
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 6.5e-38 162.5 285 35.4
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 2.1e-36 157.5 132 60.6
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.6e-36 156.8 152 54.6
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.0e-35 155.2 132 59.1
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.1e-35 152.9 110 70.0
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 1.5e-34 151.4 124 58.9
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 4.4e-34 149.8 159 49.1
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 4.8e-33 146.4 126 57.9
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 5.7e-26 122.9 161 39.1
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 1.7e-25 121.3 124 46.8
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 1.7e-17 94.7 203 30.5
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 2.7e-15 87.4 333 27.6


User provided reference genes

Program Settings