Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 0.0e+00 1215.3 611 100.0
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 8.6e-183 644.4 368 88.6
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 5.1e-135 485.7 238 100.0
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 7.4e-134 481.9 238 98.3
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 5.9e-131 472.2 240 96.7
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 4.2e-129 466.1 238 96.2
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 1.6e-128 464.2 238 95.8
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 2.7e-128 463.4 240 95.8
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 1.8e-127 460.7 238 96.2
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 3.0e-127 459.9 240 95.4
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 5.1e-127 459.1 238 95.0
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 5.1e-127 459.1 238 95.0
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 5.1e-127 459.1 238 95.0
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 5.1e-127 459.1 238 95.0
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 5.1e-127 459.1 238 95.0
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 5.1e-127 459.1 238 95.0
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 5.1e-127 459.1 238 95.0
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 5.1e-127 459.1 238 95.0
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 2.6e-126 456.8 238 95.0
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 2.6e-126 456.8 238 95.0
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 5.7e-126 455.7 240 93.8
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 5.7e-126 455.7 240 93.8
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 9.7e-126 454.9 240 93.8
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 9.7e-126 454.9 240 95.0
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 9.7e-126 454.9 241 94.2
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 1.3e-125 454.5 240 94.6
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 1.3e-125 454.5 240 94.6
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 4.8e-125 452.6 240 92.9
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 4.8e-125 452.6 240 92.9
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 1.1e-124 451.4 240 94.2
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 1.8e-124 450.7 240 93.3
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 3.1e-124 449.9 240 94.6
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 3.1e-124 449.9 240 94.6
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 3.1e-124 449.9 238 94.5
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 1.2e-123 448.0 240 93.8
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 1.5e-123 447.6 240 94.2
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 1.5e-123 447.6 240 94.2
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 3.5e-123 446.4 240 93.8
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 7.7e-123 445.3 240 92.9
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 2.5e-121 440.3 240 92.1
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 3.2e-121 439.9 231 94.4
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 3.2e-121 439.9 231 94.4
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 2.3e-119 433.7 232 94.8
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 1.5e-118 431.0 240 91.2
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 1.1e-116 424.9 240 88.8
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 5.3e-116 422.5 240 89.2
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 7.7e-115 418.7 238 86.1
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 6.5e-114 415.6 241 86.7
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 3.2e-113 413.3 240 87.9
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 9.4e-113 411.8 238 87.0
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 7.0e-108 395.6 207 95.7
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 7.0e-108 395.6 240 85.4
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 4.5e-107 392.9 240 85.0
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 2.5e-105 387.1 212 92.5
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 3.0e-103 380.2 240 81.2
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 4.0e-103 379.8 194 95.9
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 4.1e-100 369.8 196 93.4
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 5.4e-100 369.4 199 93.0
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 5.4e-100 369.4 199 93.0
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 6.6e-98 362.5 201 92.0
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 9.5e-97 358.6 240 79.2
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.3e-93 348.2 240 77.1
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 2.4e-92 344.0 188 92.0
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 6.6e-90 335.9 196 85.2
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.6e-78 297.4 172 87.2
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 4.4e-78 296.6 159 93.7
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 7.5e-78 295.8 148 98.0
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 9.5e-73 278.9 153 92.2
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 1.6e-72 278.1 156 89.7
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 3.4e-70 270.4 150 91.3
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 3.4e-70 270.4 255 62.0
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 9.2e-68 262.3 195 73.8
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 3.5e-67 260.4 209 68.4
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.1e-63 248.8 132 91.7
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.4e-63 248.4 133 92.5
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 4.0e-63 246.9 136 89.7
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 1.3e-61 241.9 257 50.2
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 2.1e-56 224.6 114 95.6
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 1.5e-54 218.4 120 93.3
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.9e-50 203.8 116 86.2
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 8.7e-50 202.6 148 73.6
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 1.9e-49 201.4 107 92.5
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 2.5e-49 201.1 110 90.9
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 4.8e-48 196.8 101 96.0
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 9.0e-47 192.6 117 86.3
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 1.2e-43 182.2 105 89.5
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 1.1e-41 175.6 96 91.7
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 3.3e-41 174.1 165 60.0
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 1.5e-38 165.2 92 91.3
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 3.2e-36 157.5 89 85.4
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 9.3e-36 156.0 89 85.4
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 1.0e-34 152.5 197 45.7
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 3.9e-34 150.6 69 100.0
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 9.6e-33 146.0 123 62.6
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 2.1e-32 144.8 240 35.4
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.3e-31 140.2 172 49.4
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 3.4e-30 137.5 84 83.3
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 1.3e-29 135.6 82 85.4
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.2e-29 134.8 149 54.4
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 8.4e-29 132.9 88 75.0
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 1.1e-28 132.5 83 78.3
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 3.0e-26 124.4 91 75.8
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 3.3e-25 120.9 70 81.4
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.7e-25 120.2 79 78.5
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 6.9e-23 113.2 68 79.4
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 1.3e-21 109.0 154 46.8
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.9e-20 105.1 63 81.0
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 1.2e-19 102.4 53 90.6
SHI54766 Sapria himalayana HOM05D005794 ORTHO05D006814 5.1e-18 97.1 48 93.8
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 8.8e-18 96.3 183 39.9
SabraMtG0001800 Salix brachista HOM05D001325 ORTHO05D001540 4.3e-17 94.0 68 70.6
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 7.4e-17 93.2 65 73.8
Gohir.D04G096432 Gossypium hirsutum HOM05D005794 ORTHO05D006814 8.2e-16 89.7 93 57.0
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.4e-15 89.0 67 70.1
SHI14272 Sapria himalayana HOM05D005794 ORTHO05D006814 1.8e-15 88.6 61 67.2
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 2.4e-15 88.2 119 46.2
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 3.4e-14 84.3 47 78.7
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.9e-14 83.6 53 83.0
Duzib116G0892 Durio zibethinus HOM05D005794 ORTHO05D006814 8.5e-13 79.7 59 72.9
TPR.G25412 Trifolium pratense HOM05D005794 ORTHO05D006814 8.5e-13 79.7 53 83.0
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.5e-12 77.0 56 75.0
SHI16155 Sapria himalayana HOM05D005794 ORTHO05D006814 1.2e-11 75.9 84 50.0
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 3.3e-09 67.8 49 73.5
Solyc03g013460.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 3.3e-09 67.8 56 55.4
Nitab4.5_0002418g0170 Nicotiana tabacum HOM05D009000 ORTHO05D010659 9.7e-09 66.2 31 93.5
Aa31csc549G50 Aethionema arabicum HOM05D005794 ORTHO05D006814 1.1e-07 62.8 29 96.6
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 1.1e-07 62.8 49 69.4
Nitab4.5_0004100g0120 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.4e-07 62.4 30 90.0
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 5.3e-07 60.5 53 58.5
CSS0006210 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 7.0e-07 60.1 32 84.4
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 7.0e-07 60.1 30 83.3
CSS0015180 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 2.0e-06 58.5 31 83.9
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.0e-06 58.5 68 48.5


User provided reference genes

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