Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 0.0e+00 1928.7 936 100.0
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 0.0e+00 1087.4 612 88.4
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 0.0e+00 1087.4 612 88.4
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 0.0e+00 1082.0 627 86.1
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 0.0e+00 1078.9 580 92.1
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.1e-309 1065.1 578 91.5
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 5.4e-309 1064.3 580 90.3
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 5.4e-309 1064.3 580 90.3
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 2.7e-308 1062.0 580 91.2
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 7.7e-308 1060.4 579 91.4
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 1.3e-307 1059.7 577 91.3
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 1.3e-307 1059.7 577 91.3
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 2.6e-303 1045.4 576 90.1
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 8.6e-299 1030.4 578 89.1
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 9.5e-298 1026.9 577 89.1
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 4.7e-297 1024.6 556 91.2
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.4e-296 1023.1 593 86.8
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 2.0e-295 1019.2 580 88.4
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 2.2e-294 1015.8 573 88.8
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 2.2e-294 1015.8 573 88.8
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 2.2e-294 1015.8 573 88.8
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 2.2e-294 1015.8 573 88.8
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 1.4e-293 1013.1 565 89.2
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 5.0e-291 1004.6 576 87.3
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 1.5e-290 1003.0 572 88.3
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.5e-290 1002.3 576 87.0
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.3e-286 989.9 545 89.7
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 1.0e-283 980.3 595 84.7
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 1.0e-283 980.3 595 84.7
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 1.0e-283 980.3 595 84.7
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 1.0e-283 980.3 595 84.7
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 1.0e-283 980.3 595 84.7
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 1.0e-283 980.3 595 84.7
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 1.1e-280 970.3 564 85.8
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 6.2e-273 944.5 550 85.8
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 1.8e-272 943.0 574 82.8
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 4.1e-269 931.8 572 82.9
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.2e-268 930.2 583 81.5
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 6.6e-267 924.5 684 72.8
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 9.6e-258 894.0 507 88.2
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-251 873.2 573 78.2
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 1.1e-250 870.5 552 80.4
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 4.5e-231 805.4 476 85.9
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 1.1e-213 747.7 396 93.2
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 6.5e-206 721.8 396 90.9
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 1.4e-203 714.1 491 76.8
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 1.4e-192 677.6 382 88.2
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 1.4e-192 677.6 382 88.2
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 1.2e-191 674.5 396 86.1
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.9e-191 672.2 471 75.8
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 6.5e-190 668.7 382 87.4
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.9e-189 667.2 382 87.2
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 7.2e-189 665.2 382 86.9
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 7.5e-186 655.2 574 62.5
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 7.5e-178 628.6 360 87.2
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 8.6e-174 615.1 459 70.4
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 1.6e-172 610.9 382 82.5
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.2e-172 609.0 577 60.1
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 2.6e-170 603.6 398 78.1
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 3.2e-168 596.7 318 91.5
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 4.6e-167 592.8 361 83.7
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 1.0e-166 591.7 371 81.7
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 1.1e-163 581.6 318 90.3
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 1.1e-157 561.6 575 56.0
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 2.4e-155 553.9 575 55.5
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 9.3e-144 515.4 306 83.3
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 2.3e-142 510.8 293 88.1
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 9.0e-139 498.8 292 85.6
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 3.5e-135 486.9 374 69.5
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 8.4e-129 465.7 260 89.2
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 1.0e-126 458.8 296 79.1
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.6e-124 451.4 290 80.3
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 3.7e-124 450.3 394 63.2
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.2e-124 449.5 305 74.4
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.1e-123 448.7 285 80.0
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 5.3e-123 446.4 271 82.7
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 2.4e-115 421.0 243 86.4
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 9.4e-112 409.1 239 87.4
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 5.1e-110 403.3 265 77.0
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 2.0e-109 401.4 202 94.1
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 5.7e-109 399.8 202 94.1
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 5.7e-109 399.8 202 94.1
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 2.2e-108 397.9 202 93.6
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 3.7e-108 397.1 231 84.8
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 3.1e-107 394.0 231 84.4
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 4.1e-107 393.7 292 72.3
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 4.1e-107 393.7 292 72.3
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 5.3e-107 393.3 867 37.4
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 6.9e-107 392.9 218 89.9
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 2.7e-103 380.9 239 78.7
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 2.4e-99 367.9 408 55.6
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 3.5e-98 364.0 273 68.1
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 5.7e-93 346.7 200 89.0
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 1.2e-90 339.0 181 93.9
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 1.1e-88 332.4 166 93.4
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 4.2e-88 330.5 191 88.5
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 1.4e-86 325.5 170 90.0
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 2.2e-84 318.2 179 84.9
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 1.4e-83 315.5 192 81.2
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 1.4e-83 315.5 192 81.2
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 1.4e-83 315.5 262 63.7
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 1.0e-81 309.3 261 63.6
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 6.5e-81 306.6 175 84.6
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 4.2e-80 303.9 262 61.8
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 2.8e-76 291.2 142 93.0
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 3.1e-75 287.7 222 69.4
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.7e-74 284.6 238 63.9
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 3.5e-74 284.3 171 84.8
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 8.0e-71 273.1 212 71.7
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 4.0e-70 270.8 136 97.1
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 1.7e-68 265.4 166 78.3
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 1.7e-68 265.4 166 78.3
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 2.2e-68 265.0 160 85.6
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 2.8e-68 264.6 163 79.8
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.4e-67 262.3 134 95.5
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 7.8e-66 256.5 346 45.4
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 2.5e-64 251.5 136 92.6
CAN.G1439.7 Capsicum annuum HOM05D003783 ORTHO05D004568 2.1e-63 248.4 161 75.8
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.5e-61 242.3 143 84.6
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 1.3e-60 239.2 124 96.8
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 6.4e-60 236.9 270 53.0
BolSC28t60383H Brassica oleracea HOM05D003783 ORTHO05D004568 3.2e-59 234.6 120 89.2
BraSC224t45815Z Brassica rapa HOM05D003783 ORTHO05D004568 3.2e-59 234.6 120 89.2
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 4.1e-59 234.2 122 95.1
BolC1t03458H Brassica oleracea HOM05D003783 ORTHO05D004568 2.3e-54 218.4 135 77.8
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 2.0e-53 215.3 118 92.4
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 2.6e-53 214.9 112 91.1
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.9e-52 211.5 123 88.6
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.4e-51 209.1 118 87.3
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 7.0e-51 206.8 108 96.3
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 5.1e-49 200.7 117 88.9
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 1.5e-48 199.1 104 96.2
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 4.3e-48 197.6 130 77.7
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 1.1e-43 183.0 122 78.7
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.6e-42 179.1 166 62.7
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 1.1e-40 172.9 123 74.0
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 1.5e-40 172.6 98 85.7
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.8e-39 168.3 331 40.5
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 8.1e-39 166.8 110 75.5
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 5.8e-37 160.6 91 87.9
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.4e-36 157.1 94 87.2
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 2.7e-34 151.8 75 96.0
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 3.3e-32 144.8 137 59.1
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 1.6e-31 142.5 77 84.4
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 9.9e-29 133.3 93 76.3
ATR1173G002 Amborella trichopoda HOM05D003783 ORTHO05D004568 3.8e-28 131.3 100 68.0
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 1.9e-27 129.0 65 92.3
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 2.4e-27 128.6 66 92.4
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 4.2e-27 127.9 177 45.2
SHI26670 Sapria himalayana HOM05D003783 ORTHO05D004568 1.4e-22 112.8 70 74.3
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.3e-22 110.9 62 88.7
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.7e-20 105.9 74 75.7
Lalb_Chr22g0357831 Lupinus albus HOM05D003783 ORTHO05D004568 1.9e-19 102.4 71 69.0
Solyc10g048130.3 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.1e-19 100.5 167 40.7
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 9.3e-19 100.1 64 68.8
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 2.1e-18 99.0 60 78.3
Lalb_Chr00c24g0406641 Lupinus albus HOM05D003043 ORTHO05D036527 1.3e-17 96.3 65 76.9
Peaxi162Scf00649g00054 Petunia axillaris HOM05D003043 ORTHO05D036527 1.8e-17 95.9 55 83.6
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 6.7e-17 94.0 60 80.0
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 8.7e-17 93.6 60 80.0
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 1.1e-16 93.2 189 34.4
Solyc01g058550.1 Solanum lycopersicum HOM05D003043 ORTHO05D036527 2.1e-15 89.0 54 77.8
Aqoxy1G02245 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 3.7e-15 88.2 53 90.6
TPR.G13188 Trifolium pratense HOM05D003783 ORTHO05D004568 3.7e-15 88.2 51 68.6
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 2.4e-14 85.5 84 52.4
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 2.6e-13 82.0 48 83.3
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 5.8e-13 80.9 104 47.1
Solyc12g035895.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.3e-12 79.7 142 38.0
Nitab4.5_0002739g0140 Nicotiana tabacum HOM05D003783 ORTHO05D015637 8.4e-12 77.0 49 77.6
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 3.2e-11 75.1 47 76.6
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 5.5e-11 74.3 63 60.3
BcaC01g03561 Brassica carinata HOM05D025145 ORTHO05D016019 9.3e-11 73.6 43 83.7
Solyc06g065880.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.1e-10 72.4 113 41.6
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 1.0e-09 70.1 53 66.0
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.3e-09 69.7 49 71.4
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 2.3e-09 68.9 88 45.5
Solyc03g013380.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.9e-09 68.2 45 77.8
DCAR_004797 Daucus carota HOM05D003783 ORTHO05D004568 1.1e-08 66.6 29 96.6
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.5e-08 65.5 38 84.2
SHI26672 Sapria himalayana HOM05D003783 ORTHO05D004568 1.6e-07 62.8 65 56.9
BolSC28t60417H Brassica oleracea HOM05D000216 ORTHO05D001131 8.2e-07 60.5 27 88.9
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 1.4e-06 59.7 83 41.0
CAN.G60.11 Capsicum annuum HOM05D001322 ORTHO05D001301 3.1e-06 58.5 35 82.9


User provided reference genes

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