Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 3.9e-168 594.7 303 100.0
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 1.3e-142 510.0 263 98.1
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 1.1e-141 506.9 265 97.0
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 8.2e-134 480.7 265 93.6
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 2.7e-121 439.1 265 84.9
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 3.1e-117 425.6 286 77.6
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 8.5e-115 417.5 265 83.4
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 3.5e-108 395.6 265 76.6
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 1.8e-104 383.3 265 73.2
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 1.8e-104 383.3 265 73.2
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 5.2e-104 381.7 265 72.5
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 3.4e-103 379.0 265 72.5
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 1.7e-102 376.7 265 72.1
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 6.3e-102 374.8 265 71.7
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 1.2e-100 370.5 265 70.9
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 7.7e-100 367.9 265 70.6
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 7.7e-100 367.9 265 70.6
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 7.7e-100 367.9 265 70.6
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 1.0e-99 367.5 265 70.6
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 1.3e-99 367.1 265 70.2
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 2.9e-99 365.9 265 69.8
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 1.2e-97 360.5 265 69.1
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 2.1e-97 359.8 265 71.7
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 4.7e-97 358.6 265 67.5
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 4.7e-97 358.6 265 67.5
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 1.8e-96 356.7 309 66.3
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 2.3e-96 356.3 265 68.7
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 3.0e-96 355.9 265 67.9
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 6.8e-96 354.8 265 67.9
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 8.8e-96 354.4 265 67.5
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 1.2e-95 354.0 265 67.5
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 1.5e-95 353.6 265 69.4
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 2.0e-95 353.2 265 67.9
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 2.6e-95 352.8 265 66.4
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 2.6e-95 352.8 265 66.4
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 3.4e-95 352.4 265 69.1
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 4.4e-95 352.1 264 68.9
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 7.5e-95 351.3 266 68.8
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 9.8e-95 350.9 265 68.3
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 1.3e-94 350.5 265 67.9
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 1.7e-94 350.1 265 66.4
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 1.7e-94 350.1 264 70.1
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 2.2e-94 349.7 268 68.7
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 2.2e-94 349.7 265 65.3
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 3.7e-94 349.0 265 65.7
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 6.3e-94 348.2 265 66.0
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 8.3e-94 347.8 265 67.9
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 1.1e-93 347.4 268 68.3
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 2.4e-93 346.3 265 67.2
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 4.1e-93 345.5 266 67.7
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 4.1e-93 345.5 265 66.8
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 5.4e-93 345.1 265 64.9
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 9.2e-93 344.4 265 67.5
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 1.2e-92 344.0 265 65.7
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 1.6e-92 343.6 265 65.3
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.6e-92 343.6 265 66.0
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 2.0e-92 343.2 266 66.2
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 2.7e-92 342.8 265 65.3
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 2.7e-92 342.8 265 65.7
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 2.7e-92 342.8 265 66.0
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 3.5e-92 342.4 265 67.2
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 4.5e-92 342.0 265 66.4
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 1.0e-91 340.9 265 67.2
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 1.0e-91 340.9 265 66.0
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.3e-91 340.5 265 66.8
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 1.7e-91 340.1 265 64.2
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 2.3e-91 339.7 265 66.0
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 2.3e-91 339.7 265 66.8
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 3.8e-91 339.0 265 65.7
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 3.8e-91 339.0 265 63.8
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 5.0e-91 338.6 265 65.7
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 5.0e-91 338.6 265 65.7
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 6.6e-91 338.2 265 65.3
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 8.6e-91 337.8 265 65.3
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 1.9e-90 336.7 265 66.4
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 3.3e-90 335.9 265 64.9
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 3.3e-90 335.9 265 64.2
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 5.6e-90 335.1 265 64.9
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 5.6e-90 335.1 265 64.5
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 9.5e-90 334.3 265 65.7
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 1.6e-89 333.6 265 65.7
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 2.1e-89 333.2 265 64.2
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 2.1e-89 333.2 265 64.9
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.1e-89 333.2 265 64.9
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 2.8e-89 332.8 265 64.9
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 4.7e-89 332.0 265 64.5
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 6.1e-89 331.6 287 62.0
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 8.0e-89 331.3 287 62.0
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 8.0e-89 331.3 265 63.4
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 1.4e-88 330.5 265 64.2
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 1.8e-88 330.1 292 59.2
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 1.8e-88 330.1 266 62.0
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 3.0e-88 329.3 265 63.8
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 4.0e-88 328.9 265 65.7
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 2.0e-87 326.6 265 63.0
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 4.4e-87 325.5 265 63.8
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 9.8e-87 324.3 265 63.0
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 9.8e-87 324.3 265 62.3
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 2.2e-86 323.2 265 62.6
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 4.9e-86 322.0 264 63.3
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 4.9e-86 322.0 265 62.3
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 4.9e-86 322.0 264 62.5
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 1.1e-85 320.9 265 63.4
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 1.8e-85 320.1 265 61.9
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 7.0e-85 318.2 265 61.5
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 9.2e-85 317.8 265 62.6
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 2.7e-84 316.2 265 62.3
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 1.7e-83 313.5 283 59.4
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 1.6e-81 307.0 244 67.2
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 2.8e-81 306.2 265 61.1
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 1.8e-80 303.5 265 57.4
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 3.1e-80 302.8 265 58.5
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 4.4e-79 298.9 226 68.6
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 5.8e-79 298.5 265 57.7
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 6.4e-78 295.0 237 65.4
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 6.4e-78 295.0 148 98.6
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 3.2e-77 292.7 265 55.1
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 2.0e-76 290.0 287 56.8
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 3.9e-75 285.8 282 52.1
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 5.0e-75 285.4 265 54.3
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 1.1e-74 284.3 330 48.2
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 6.2e-73 278.5 287 55.4
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.1e-72 277.7 264 51.1
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 1.4e-72 277.3 263 52.9
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 1.9e-69 266.9 236 58.5
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 9.2e-69 264.6 257 51.4
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 3.3e-66 256.1 210 59.5
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 7.3e-66 255.0 265 49.4
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 1.7e-62 243.8 262 48.9
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 1.6e-60 237.3 204 56.9
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 3.6e-57 226.1 168 66.7
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 1.9e-42 177.2 240 47.1
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 1.4e-40 171.0 160 51.9
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 3.4e-39 166.4 132 65.2
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 2.7e-36 156.8 262 34.7
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 3.0e-35 153.3 110 69.1
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 4.8e-33 146.0 162 45.7
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 3.8e-30 136.3 206 41.7
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 2.3e-27 127.1 263 28.9
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 3.9e-27 126.3 263 29.3
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.5e-26 124.4 170 42.9
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 1.1e-24 118.2 94 62.8
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 1.8e-24 117.5 68 83.8
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 6.9e-24 115.5 150 44.0
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 1.3e-22 111.3 151 43.7
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 1.1e-21 108.2 78 69.2
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 1.6e-20 104.4 100 56.0
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.5e-18 97.8 132 45.5
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 2.5e-18 97.1 138 41.3
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 8.2e-17 92.0 69 65.2
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 9.1e-16 88.6 270 34.1
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 2.9e-14 83.6 59 71.2
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 2.6e-10 70.5 52 67.3
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 2.6e-10 70.5 42 76.2
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 2.6e-10 70.5 55 63.6


User provided reference genes

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