Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra19G0114400 Salix brachista HOM05D007183 ORTHO05D008829 8.3e-102 373.6 179 100.0
Manes.13G149600 Manihot esculenta HOM05D007183 ORTHO05D008829 5.0e-38 161.8 221 44.3
TAR629G0430 Trochodendron aralioides HOM05D007183 ORTHO05D008829 9.1e-32 141.0 206 41.7
Dinv03840 Davidia involucrata HOM05D007183 ORTHO05D008829 2.5e-29 132.9 206 41.7
Manes.16G023400 Manihot esculenta HOM05D007183 ORTHO05D008829 6.7e-27 124.8 215 37.7
Ciclev10017704m.g Citrus clementina HOM05D007183 ORTHO05D008829 1.5e-26 123.6 205 36.6
TWI38G0385 Tripterygium wilfordii HOM05D007183 ORTHO05D008829 3.3e-26 122.5 205 38.0
Hma1.2p1_0191F.1_g083390 Hydrangea macrophylla HOM05D007183 ORTHO05D008829 4.4e-26 122.1 203 37.9
COL.COLO4_35412 Corchorus olitorius HOM05D007183 ORTHO05D008829 1.7e-25 120.2 205 38.0
TWI63G1715 Tripterygium wilfordii HOM05D007183 ORTHO05D008829 2.2e-25 119.8 205 37.1
GSVIVG01030561001 Vitis vinifera HOM05D007183 ORTHO05D008829 2.2e-25 119.8 206 38.3
ATR0693G416 Amborella trichopoda HOM05D007183 ORTHO05D008829 2.8e-25 119.4 223 35.0
Thecc.02G174600 Theobroma cacao HOM05D007183 ORTHO05D008829 2.8e-25 119.4 203 37.4
Thecc.06G194600 Theobroma cacao HOM05D007183 ORTHO05D008829 3.7e-25 119.0 202 38.1
Potri.011G046100 Populus trichocarpa HOM05D007183 ORTHO05D008829 8.2e-25 117.9 205 36.6
Cpa.g.sc34.121 Carica papaya HOM05D007183 ORTHO05D008829 5.3e-24 115.2 219 34.2
HanXRQChr05g0140521 Helianthus annuus HOM05D007183 ORTHO05D008829 9.1e-24 114.4 221 33.9
PGR004G0270 Punica granatum HOM05D007183 ORTHO05D008829 7.7e-23 111.3 208 34.6
Gohir.D02G181900 Gossypium hirsutum HOM05D007183 ORTHO05D008829 1.0e-22 110.9 203 36.5
Gorai.005G204400 Gossypium raimondii HOM05D007183 ORTHO05D008829 1.7e-22 110.2 203 36.5
Phvul.006G189500 Phaseolus vulgaris HOM05D007183 ORTHO05D008829 1.7e-22 110.2 201 32.8
Haze_13111 Corylus avellana HOM05D007183 ORTHO05D008829 2.2e-22 109.8 195 36.9
Glyma.13G243900 Glycine max HOM05D007183 ORTHO05D008829 2.2e-22 109.8 204 36.3
Potri.004G037400 Populus trichocarpa HOM05D007183 ORTHO05D008829 2.9e-22 109.4 205 35.1
CsaV3_7G004260 Cucumis sativus L. HOM05D007183 ORTHO05D008829 6.5e-22 108.2 185 35.1
PGR042G2243 Punica granatum HOM05D007183 ORTHO05D008829 6.5e-22 108.2 206 36.4
MD10G1300400 Malus domestica HOM05D007183 ORTHO05D008829 1.1e-21 107.5 199 35.2
Cc05_g06690 Coffea canephora HOM05D007183 ORTHO05D008829 1.5e-21 107.1 212 33.0
ClCG02G001190 Citrullus lanatus HOM05D007183 ORTHO05D008829 3.2e-21 105.9 185 35.1
Glyma.15G069800 Glycine max HOM05D007183 ORTHO05D008829 3.2e-21 105.9 204 34.3
MD05G1322500 Malus domestica HOM05D007183 ORTHO05D008829 4.2e-21 105.5 199 35.2
MELO3C018752.2 Cucumis melo HOM05D007183 ORTHO05D008829 7.2e-21 104.8 185 34.1
ECA234G1429 Erigeron canadensis HOM05D007183 ORTHO05D000476 7.2e-21 104.8 228 31.6
Prupe.4G040300 Prunus persica HOM05D007183 ORTHO05D008829 7.2e-21 104.8 204 34.3
GSVIVG01006336001 Vitis vinifera HOM05D007183 ORTHO05D008829 7.2e-21 104.8 189 37.6
GSVIVG01006947001 Vitis vinifera HOM05D007183 ORTHO05D008829 9.4e-21 104.4 189 37.6
Lj2P283T62 Lonicera japonica HOM05D007183 ORTHO05D008829 1.6e-20 103.6 199 34.7
Gohir.A10G022800 Gossypium hirsutum HOM05D007183 ORTHO05D008829 2.1e-20 103.2 193 33.7
Medtr2g012790 Medicago truncatula HOM05D007183 ORTHO05D008829 3.6e-20 102.4 201 33.3
arahy.Tifrunner.gnm1.ann1.CVYZ1N Arachis hypogaea HOM05D007183 ORTHO05D008829 4.7e-20 102.1 198 34.3
arahy.Tifrunner.gnm1.ann1.R2A86L Arachis hypogaea HOM05D007183 ORTHO05D008829 4.7e-20 102.1 198 34.3
Gorai.011G024700 Gossypium raimondii HOM05D007183 ORTHO05D008829 4.7e-20 102.1 193 33.7
Gohir.D10G023600 Gossypium hirsutum HOM05D007183 ORTHO05D008829 1.0e-19 100.9 199 32.7
Solyc10g008530.1 Solanum lycopersicum HOM05D007183 ORTHO05D008829 1.4e-19 100.5 207 32.4
Sed0026806 Sechium edule HOM05D007183 ORTHO05D008829 1.8e-19 100.1 185 34.6
PGSC0003DMG400042494 Solanum tuberosum HOM05D007183 ORTHO05D008829 1.8e-19 100.1 206 33.0
Ca_00299_v3 Cicer arietinum L. HOM05D007183 ORTHO05D008829 3.0e-19 99.4 203 32.0
Cfa000386 Carpinus fangiana HOM05D007183 ORTHO05D008829 5.2e-19 98.6 178 36.0
Lj6g0020427 Lotus japonicus HOM05D007183 ORTHO05D008829 5.2e-19 98.6 197 34.5
CiPaw.09G053400 Carya illinoinensis HOM05D007183 ORTHO05D008829 6.8e-19 98.2 172 39.5
Cc00_g11490 Coffea canephora HOM05D007183 ORTHO05D008829 8.8e-19 97.8 151 37.7
Nitab4.5_0007319g0020 Nicotiana tabacum HOM05D007183 ORTHO05D008829 1.2e-18 97.4 224 31.2
arahy.Tifrunner.gnm1.ann1.EK8XNT Arachis hypogaea HOM05D007183 ORTHO05D008829 1.5e-18 97.1 212 32.1
VMungo0540G0277 Vigna mungo HOM05D007183 ORTHO05D008829 2.6e-18 96.3 201 32.8
arahy.Tifrunner.gnm1.ann1.B6W742 Arachis hypogaea HOM05D007183 ORTHO05D008829 3.4e-18 95.9 212 31.6
TPR.G36730 Trifolium pratense HOM05D007183 ORTHO05D008829 4.4e-18 95.5 210 31.0
Eucgr.L02005 Eucalyptus grandis HOM05D007183 ORTHO05D008829 1.7e-17 93.6 194 33.5
HanXRQChr16g0517841 Helianthus annuus HOM05D007183 ORTHO05D008829 1.7e-17 93.6 209 30.6
Psat1g207000 Pisum sativum HOM05D007183 ORTHO05D008829 1.7e-17 93.6 204 30.4
RcHm_v2.0_Chr5g0007471 Rosa chinensis HOM05D007183 ORTHO05D008829 1.7e-17 93.6 203 32.5
CANSAT35G0251 Cannabis sativa HOM05D007183 ORTHO05D008829 2.2e-17 93.2 204 33.3
Dinv40521 Davidia involucrata HOM05D007183 ORTHO05D008829 2.8e-17 92.8 90 53.3
FvH4_3g27971 Fragaria vesca HOM05D007183 ORTHO05D008829 3.7e-17 92.4 209 32.1
TPR.G36795 Trifolium pratense HOM05D007183 ORTHO05D008829 1.1e-16 90.9 201 31.8
CAN.G996.14 Capsicum annuum HOM05D007183 ORTHO05D008829 3.1e-16 89.4 131 41.2
Duzib235G0436 Durio zibethinus HOM05D007183 ORTHO05D008829 3.1e-16 89.4 68 58.8
DCAR_021231 Daucus carota HOM05D007183 ORTHO05D008829 1.2e-15 87.4 137 36.5
Sopen02g023560 Solanum pennellii HOM05D007183 ORTHO05D008829 1.2e-15 87.4 196 31.1
PGSC0003DMG400045796 Solanum tuberosum HOM05D007183 ORTHO05D008829 4.5e-15 85.5 196 31.6
PSO675G2267 Papaver somniferum HOM05D007183 ORTHO05D008829 7.7e-15 84.7 203 30.5
Sed0021459 Sechium edule HOM05D007183 ORTHO05D008829 1.0e-14 84.3 185 31.9
Aqoxy1G02644 Aquilegia oxysepala HOM05D007183 ORTHO05D008829 1.3e-14 84.0 66 68.2
Gohir.A03G158800 Gossypium hirsutum HOM05D007183 ORTHO05D008829 1.3e-14 84.0 179 32.4
MBI02_g37921_MAGBIO Magnolia biondii HOM05D007183 ORTHO05D008829 2.2e-14 83.2 91 46.2
Solyc02g078710.1 Solanum lycopersicum HOM05D007183 ORTHO05D008829 3.8e-14 82.4 196 30.6
Nitab4.5_0002370g0040 Nicotiana tabacum HOM05D007183 ORTHO05D008829 5.0e-14 82.0 132 39.4
Nitab4.5_0001871g0020 Nicotiana tabacum HOM05D007183 ORTHO05D008829 8.5e-14 81.3 132 39.4
Gohir.A05G163250 Gossypium hirsutum HOM05D007183 ORTHO05D008829 1.9e-13 80.1 154 36.4
Solyc07g054570.1 Solanum lycopersicum HOM05D007183 ORTHO05D008829 1.9e-13 80.1 132 38.6
Solyc08g068470.1 Solanum lycopersicum HOM05D007183 ORTHO05D008829 3.2e-13 79.3 132 38.6
Actinidia09880 Actinidia chinensis HOM05D007183 ORTHO05D008829 4.2e-13 79.0 96 46.9
PSO541G4014 Papaver somniferum HOM05D007183 ORTHO05D008829 7.2e-13 78.2 203 29.1
Peaxi162Scf00007g00283 Petunia axillaris HOM05D007183 ORTHO05D008829 2.1e-12 76.6 131 38.9
CAN.G168.28 Capsicum annuum HOM05D007183 ORTHO05D008829 4.7e-12 75.5 51 62.7
Gorai.009G171300 Gossypium raimondii HOM05D007183 ORTHO05D008829 8.0e-12 74.7 70 50.0
Gohir.D05G166200 Gossypium hirsutum HOM05D007183 ORTHO05D008829 1.0e-11 74.3 70 48.6
Eucgr.D00687 Eucalyptus grandis HOM05D007183 ORTHO05D008829 1.8e-11 73.6 100 38.0
Migut.H01046 Erythranthe guttata HOM05D007183 ORTHO05D008829 6.8e-11 71.6 122 36.1
Eucgr.H04148 Eucalyptus grandis HOM05D000667 ORTHO05D003095 7.5e-10 68.2 61 41.0
FvH4_4g21831 Fragaria vesca HOM05D000667 ORTHO05D003095 7.5e-10 68.2 61 42.6
FAN17G1110 Fragaria x ananassa HOM05D000667 ORTHO05D003095 7.5e-10 68.2 61 42.6
Prupe.1G209000 Prunus persica HOM05D000667 ORTHO05D003095 7.5e-10 68.2 61 42.6
Nitab4.5_0001820g0090 Nicotiana tabacum HOM05D007183 ORTHO05D008829 9.8e-10 67.8 53 58.5
RcHm_v2.0_Chr4g0428071 Rosa chinensis HOM05D000667 ORTHO05D003095 9.8e-10 67.8 61 42.6
FAN07G0487 Fragaria x ananassa HOM05D000667 ORTHO05D003095 1.3e-09 67.4 61 42.6
Duzib177G0493 Durio zibethinus HOM05D000667 ORTHO05D003095 1.7e-09 67.0 57 47.4
Oeu038241.1 Olea europaea HOM05D007183 ORTHO05D008829 2.2e-09 66.6 47 63.8
Oeu058749.1 Olea europaea HOM05D007183 ORTHO05D008829 2.2e-09 66.6 65 49.2
CiPaw.01G126800 Carya illinoinensis HOM05D000667 ORTHO05D003095 2.8e-09 66.2 61 39.3
FAN12G3400 Fragaria x ananassa HOM05D000667 ORTHO05D003095 2.8e-09 66.2 61 41.0
Gohir.D13G168200 Gossypium hirsutum HOM05D000667 ORTHO05D003095 2.8e-09 66.2 57 43.9
Gorai.013G193900 Gossypium raimondii HOM05D000667 ORTHO05D003095 2.8e-09 66.2 57 43.9
Actinidia24553 Actinidia chinensis HOM05D000667 ORTHO05D003095 3.7e-09 65.9 61 41.0
Gohir.A13G165200 Gossypium hirsutum HOM05D000667 ORTHO05D003095 3.7e-09 65.9 57 43.9
QL06p014826 Quercus lobata HOM05D000667 ORTHO05D003095 4.9e-09 65.5 81 37.0
Actinidia01436 Actinidia chinensis HOM05D007183 ORTHO05D008829 6.3e-09 65.1 78 50.0
AagrBONN_evm.TU.Sc2ySwM_117.2587 Anthoceros agrestis HOM05D006800 ORTHO05D008478 6.3e-09 65.1 55 52.7
Thecc.05G247000 Theobroma cacao HOM05D000667 ORTHO05D003095 6.3e-09 65.1 55 50.9
MD13G1136500 Malus domestica HOM05D003852 ORTHO05D003095 8.3e-09 64.7 61 39.3
COL.COLO4_31536 Corchorus olitorius HOM05D007183 ORTHO05D008829 1.1e-08 64.3 53 56.6
Migut.M01164 Erythranthe guttata HOM05D007183 ORTHO05D008829 1.1e-08 64.3 85 41.2
VMungo1383G1271 Vigna mungo HOM05D003852 ORTHO05D003095 1.1e-08 64.3 172 32.0
Manes.12G040400 Manihot esculenta HOM05D000667 ORTHO05D003095 1.4e-08 63.9 61 41.0
Potri.010G004500 Populus trichocarpa HOM05D000667 ORTHO05D003095 1.4e-08 63.9 57 42.1
Haze_06540 Corylus avellana HOM05D007183 ORTHO05D008829 1.8e-08 63.5 63 52.4
Peaxi162Scf00608g00919 Petunia axillaris HOM05D007183 ORTHO05D008829 1.8e-08 63.5 108 36.1
Phvul.001G153400 Phaseolus vulgaris HOM05D003852 ORTHO05D003095 1.8e-08 63.5 129 36.4
Duzib106G1028 Durio zibethinus HOM05D000667 ORTHO05D003095 2.4e-08 63.2 57 42.1
MD16G1131800 Malus domestica HOM05D000667 ORTHO05D003095 2.4e-08 63.2 61 39.3
COL.COLO4_32975 Corchorus olitorius HOM05D000667 ORTHO05D003095 3.1e-08 62.8 55 47.3
Glyma.03G156000 Glycine max HOM05D003852 ORTHO05D003095 4.1e-08 62.4 172 31.4
SMO343G0007 Selaginella moellendorffii HOM05D000667 ORTHO05D008829 4.1e-08 62.4 57 49.1
PGR004G1039 Punica granatum HOM05D000667 ORTHO05D003095 7.0e-08 61.6 59 45.8
SEGI_07341 Sequoiadendron giganteum HOM05D007183 ORTHO05D008829 9.1e-08 61.2 161 27.3
Atru.chr4.3194 Acer truncatum HOM05D003852 ORTHO05D003095 1.2e-07 60.8 59 44.1
Aqoxy5G02870 Aquilegia oxysepala HOM05D000667 ORTHO05D003095 1.2e-07 60.8 55 45.5
arahy.Tifrunner.gnm1.ann1.0NU1GV Arachis hypogaea HOM05D003852 ORTHO05D003095 1.2e-07 60.8 172 30.8
Glyma.19G158300 Glycine max HOM05D003852 ORTHO05D003095 1.6e-07 60.5 172 30.8
Sabra10G0003900 Salix brachista HOM05D000667 ORTHO05D003095 1.6e-07 60.5 60 41.7
Zm00001eb258250 Zea mays HOM05D007183 ORTHO05D008829 1.6e-07 60.5 113 33.6
Migut.D00321 Erythranthe guttata HOM05D003852 ORTHO05D003095 4.5e-07 58.9 111 29.7
Eucgr.E03363 Eucalyptus grandis HOM05D007183 ORTHO05D008829 4.5e-07 58.9 127 33.1
Glyma.10G028000 Glycine max HOM05D003852 ORTHO05D003095 7.7e-07 58.2 127 35.4
Hma1.2p1_0822F.1_g224280 Hydrangea macrophylla HOM05D003852 ORTHO05D003095 7.7e-07 58.2 123 34.1
SMO358G0266 Selaginella moellendorffii HOM05D007183 ORTHO05D008829 1.0e-06 57.8 53 52.8
Aa31LG7G770 Aethionema arabicum HOM05D000667 ORTHO05D003095 1.7e-06 57.0 57 43.9
Glyma.02G146000 Glycine max HOM05D003852 ORTHO05D003095 1.7e-06 57.0 127 35.4
Prupe.8G238100 Prunus persica HOM05D003852 ORTHO05D003095 1.7e-06 57.0 174 29.3
MSTRG.18249 Avicennia marina HOM05D003852 ORTHO05D003095 2.3e-06 56.6 134 31.3
C08p17400 Brassica napus HOM05D001040 ORTHO05D002795 2.3e-06 56.6 57 40.4
BolC8t49366H Brassica oleracea HOM05D001040 ORTHO05D002795 2.3e-06 56.6 57 40.4
Eucgr.H04146 Eucalyptus grandis HOM05D000667 ORTHO05D003095 2.3e-06 56.6 54 38.9
THA.LOC104812401 Tarenaya hassleriana HOM05D000667 ORTHO05D003095 2.3e-06 56.6 57 40.4
A08p31390 Brassica napus HOM05D001040 ORTHO05D002795 3.8e-06 55.8 57 40.4
BraA08t35062Z Brassica rapa HOM05D001040 ORTHO05D002795 3.8e-06 55.8 57 40.4
PSO357G0139 Papaver somniferum HOM05D000667 ORTHO05D003095 3.8e-06 55.8 61 37.7
PGR119G0242 Punica granatum HOM05D003852 ORTHO05D003095 3.8e-06 55.8 69 44.9
Medtr7g095220 Medicago truncatula HOM05D003852 ORTHO05D003095 5.0e-06 55.5 110 32.7
TAR636G3298 Trochodendron aralioides HOM05D000667 ORTHO05D003095 5.0e-06 55.5 59 39.0
GSVIVG01001176001 Vitis vinifera HOM05D003852 ORTHO05D003095 6.6e-06 55.1 61 42.6
Actinidia24909 Actinidia chinensis HOM05D003852 ORTHO05D003095 8.6e-06 54.7 62 43.5
CSS0008120 Camellia sinensis var. sinensis HOM05D003852 ORTHO05D003095 8.6e-06 54.7 62 43.5
CSS0030773 Camellia sinensis var. sinensis HOM05D003852 ORTHO05D003095 8.6e-06 54.7 62 43.5
Lalb_Chr25g0290201 Lupinus albus HOM05D003852 ORTHO05D003095 8.6e-06 54.7 69 44.9
PSO170G0139 Papaver somniferum HOM05D000667 ORTHO05D003095 8.6e-06 54.7 61 36.1


User provided reference genes

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