Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 1.7e-154 549.3 282 100.0
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 1.7e-154 549.3 282 100.0
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 3.0e-146 521.9 282 94.0
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 4.0e-127 458.4 270 87.0
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 2.2e-120 436.0 265 84.9
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 8.5e-117 424.1 292 80.1
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 1.4e-98 363.6 281 70.1
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 1.5e-97 360.1 287 69.3
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 2.4e-95 352.8 284 70.1
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 1.2e-94 350.5 287 70.0
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 1.6e-94 350.1 285 68.1
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 4.5e-94 348.6 283 68.2
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 5.9e-94 348.2 283 68.2
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 1.7e-93 346.7 283 68.9
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 2.9e-93 345.9 287 68.3
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 5.0e-93 345.1 283 68.2
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 8.5e-93 344.4 284 68.3
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 2.5e-92 342.8 286 66.1
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 3.2e-92 342.4 275 67.6
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 5.5e-92 341.7 261 69.7
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 2.7e-91 339.3 244 72.5
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 4.7e-91 338.6 286 65.7
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 6.1e-91 338.2 271 68.6
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 1.8e-90 336.7 239 74.1
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 2.6e-89 332.8 288 63.9
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 7.5e-89 331.3 267 67.8
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 7.5e-89 331.3 243 72.8
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 9.8e-89 330.9 295 63.1
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.7e-88 330.1 286 64.3
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 2.2e-88 329.7 253 69.6
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 6.3e-88 328.2 284 63.7
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 6.3e-88 328.2 284 64.1
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 6.3e-88 328.2 217 76.0
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 6.3e-88 328.2 211 79.6
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 3.1e-87 325.9 281 65.5
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 4.1e-87 325.5 289 63.3
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 5.4e-87 325.1 279 64.5
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 7.0e-87 324.7 253 68.8
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 9.1e-87 324.3 248 69.8
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.2e-86 323.9 291 61.5
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 1.6e-86 323.6 259 66.8
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 1.6e-86 323.6 265 66.4
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 4.5e-86 322.0 247 68.4
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 5.9e-86 321.6 278 65.1
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 7.7e-86 321.2 202 79.7
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 1.0e-85 320.9 202 79.2
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 1.7e-85 320.1 237 70.9
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 2.9e-85 319.3 284 63.0
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.8e-85 318.9 274 64.6
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 3.8e-85 318.9 234 71.4
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 5.0e-85 318.5 284 63.0
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 5.0e-85 318.5 278 61.9
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 6.5e-85 318.2 236 69.5
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 8.5e-85 317.8 202 79.2
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.1e-84 317.4 259 66.8
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 1.5e-84 317.0 232 69.8
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 1.9e-84 316.6 265 64.5
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 2.5e-84 316.2 226 72.6
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 2.5e-84 316.2 201 78.1
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 4.2e-84 315.5 254 67.7
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 5.5e-84 315.1 201 79.1
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 5.5e-84 315.1 241 70.1
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 7.2e-84 314.7 257 67.3
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 9.4e-84 314.3 213 73.2
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 9.4e-84 314.3 201 79.1
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 9.4e-84 314.3 215 71.6
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 9.4e-84 314.3 233 68.7
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 2.1e-83 313.2 214 75.2
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.7e-83 312.8 254 68.1
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 3.6e-83 312.4 209 74.2
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 3.6e-83 312.4 232 70.7
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 3.6e-83 312.4 236 67.4
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 6.1e-83 311.6 241 69.3
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 6.1e-83 311.6 241 69.3
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 1.0e-82 310.8 287 61.3
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 4.0e-82 308.9 203 78.3
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 6.8e-82 308.1 246 66.7
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 1.5e-81 307.0 268 62.7
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 2.6e-81 306.2 203 77.8
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 2.6e-81 306.2 201 76.6
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 2.6e-81 306.2 234 70.1
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 2.6e-81 306.2 204 76.5
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 9.8e-81 304.3 240 69.6
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 1.7e-80 303.5 277 60.6
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 2.8e-80 302.8 281 59.4
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 3.7e-80 302.4 281 60.9
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 3.7e-80 302.4 272 61.8
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 4.9e-80 302.0 272 61.4
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 8.3e-80 301.2 210 71.4
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.1e-79 300.8 233 67.4
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.1e-79 300.8 206 74.3
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 1.1e-79 300.8 250 64.8
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 1.8e-79 300.1 280 58.6
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 2.4e-79 299.7 201 75.1
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 5.4e-79 298.5 234 67.9
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 5.4e-79 298.5 210 70.5
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 5.4e-79 298.5 218 70.6
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 1.2e-78 297.4 191 78.5
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 2.7e-78 296.2 246 65.4
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 4.5e-78 295.4 257 62.3
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 1.9e-76 290.0 202 73.8
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 2.1e-75 286.6 248 66.1
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 2.8e-75 286.2 205 72.7
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 1.0e-74 284.3 275 57.1
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 3.0e-74 282.7 224 67.0
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 6.8e-74 281.6 226 66.8
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 1.5e-73 280.4 198 71.7
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 2.6e-73 279.6 200 72.0
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 5.7e-73 278.5 197 71.6
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 9.8e-73 277.7 202 68.3
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 2.2e-72 276.6 239 61.9
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 2.2e-72 276.6 189 74.1
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 4.9e-72 275.4 196 71.4
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 6.4e-72 275.0 280 55.4
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 6.4e-72 275.0 200 67.0
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 6.4e-72 275.0 198 69.7
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 8.3e-72 274.6 180 78.3
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 2.3e-69 266.5 185 74.1
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 3.6e-67 259.2 177 72.9
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 1.2e-65 254.2 177 72.9
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.4e-63 247.3 179 70.9
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 4.1e-63 245.7 258 56.6
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 2.3e-61 240.0 184 69.6
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 3.9e-61 239.2 244 55.3
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 8.6e-61 238.0 243 55.1
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 2.5e-60 236.5 169 72.2
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 2.1e-59 233.4 185 68.6
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 4.7e-59 232.3 234 55.1
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 9.8e-57 224.6 165 67.9
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 9.8e-57 224.6 165 67.9
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 1.9e-52 210.3 245 50.2
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 3.6e-51 206.1 284 47.9
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 6.2e-51 205.3 190 60.5
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 9.9e-49 198.0 131 75.6
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.0e-45 188.0 237 43.5
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 5.1e-45 185.7 110 81.8
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 3.4e-41 172.9 235 42.1
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 1.1e-39 167.9 112 75.0
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 3.3e-36 156.4 93 82.8
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 1.1e-31 141.4 223 42.6
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 7.1e-31 138.7 86 77.9
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 7.9e-30 135.2 206 43.2
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 9.9e-25 118.2 210 35.7
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 1.3e-24 117.9 189 39.7
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 9.3e-23 111.7 200 37.0
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 2.7e-22 110.2 114 52.6
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 1.0e-21 108.2 70 72.9
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 1.3e-21 107.8 203 33.5
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 3.0e-21 106.7 138 48.6
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 2.2e-16 90.5 202 31.7
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 2.2e-16 90.5 151 38.4
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 9.3e-15 85.1 66 66.7
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 2.3e-13 80.5 111 46.8
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 4.5e-09 66.2 65 56.9
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 5.0e-08 62.8 38 78.9
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 5.0e-08 62.8 146 35.6
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 3.2e-07 60.1 70 55.7


User provided reference genes

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