Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra19G0103600 Salix brachista HOM05D004563 ORTHO05D002944 4.8e-123 444.5 224 100.0
Potri.019G089900 Populus trichocarpa HOM05D004563 ORTHO05D002944 1.2e-86 323.6 231 77.5
Potri.013G118000 Populus trichocarpa HOM05D004563 ORTHO05D002944 5.0e-72 275.0 228 68.4
Sabra13G0099900 Salix brachista HOM05D004563 ORTHO05D002944 2.5e-71 272.7 228 65.4
Manes.13G138000 Manihot esculenta HOM05D004563 ORTHO05D002944 3.4e-28 129.4 306 35.0
Dinv03911 Davidia involucrata HOM05D004563 ORTHO05D002944 4.2e-26 122.5 247 37.7
CSS0006802 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 9.3e-26 121.3 219 38.8
CiPaw.04G131700 Carya illinoinensis HOM05D004563 ORTHO05D002944 4.6e-25 119.0 249 36.1
Atru.chr6.2814 Acer truncatum HOM05D004563 ORTHO05D002944 3.9e-24 115.9 233 41.2
Ciclev10015391m.g Citrus clementina HOM05D004563 ORTHO05D002944 1.3e-22 110.9 245 38.0
QL08p041398 Quercus lobata HOM05D004563 ORTHO05D002944 8.2e-22 108.2 250 34.0
Haze_13348 Corylus avellana HOM05D004563 ORTHO05D002944 5.3e-21 105.5 233 36.5
Thecc.01G148500 Theobroma cacao HOM05D004563 ORTHO05D002944 2.0e-20 103.6 254 36.2
vmacro12368 Vaccinium macrocarpon HOM05D004563 ORTHO05D002944 1.0e-16 91.3 231 34.2
PGR042G0272 Punica granatum HOM05D004563 ORTHO05D002944 3.0e-16 89.7 113 46.0
Hund07832 Selenicereus undatus HOM05D004563 ORTHO05D002944 1.1e-15 87.8 122 42.6
TWI59G1400 Tripterygium wilfordii HOM05D004563 ORTHO05D002944 1.1e-15 87.8 243 32.9
TAR624G1329 Trochodendron aralioides HOM05D004563 ORTHO05D002944 2.5e-15 86.7 135 38.5
Rhsim06G0133100 Rhododendron simsii HOM05D004563 ORTHO05D002944 4.3e-15 85.9 230 33.0
DCAR_013061 Daucus carota HOM05D004563 ORTHO05D002944 7.4e-15 85.1 170 33.5
Gohir.D10G112200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 7.4e-15 85.1 254 32.7
RcHm_v2.0_Chr2g0128481 Rosa chinensis HOM05D004563 ORTHO05D002944 7.4e-15 85.1 102 46.1
CANSAT64G2099 Cannabis sativa HOM05D004563 ORTHO05D002944 1.3e-14 84.3 224 35.7
Gorai.011G124100 Gossypium raimondii HOM05D004563 ORTHO05D002944 1.6e-14 84.0 254 32.7
TAR626G0367 Trochodendron aralioides HOM05D004563 ORTHO05D002944 2.2e-14 83.6 112 36.6
Eucgr.A01904 Eucalyptus grandis HOM05D004563 ORTHO05D002944 2.8e-14 83.2 225 32.4
RcHm_v2.0_Chr2g0129081 Rosa chinensis HOM05D004563 ORTHO05D002944 3.7e-14 82.8 237 33.8
Glyma.18G179200 Glycine max HOM05D004563 ORTHO05D002944 4.8e-14 82.4 209 30.1
Gohir.A10G153900 Gossypium hirsutum HOM05D004563 ORTHO05D002944 4.8e-14 82.4 237 32.9
Migut.M00253 Erythranthe guttata HOM05D004563 ORTHO05D002944 6.3e-14 82.0 97 47.4
Duzib147G1211 Durio zibethinus HOM05D004563 ORTHO05D002944 8.2e-14 81.6 183 36.6
FvH4_6g27121 Fragaria vesca HOM05D004563 ORTHO05D002944 1.1e-13 81.3 236 32.6
FAN14G3451 Fragaria x ananassa HOM05D004563 ORTHO05D002944 1.1e-13 81.3 236 32.6
Glyma.13G291600 Glycine max HOM05D004563 ORTHO05D002944 1.1e-13 81.3 247 29.1
Lalb_Chr14g0367401 Lupinus albus HOM05D004563 ORTHO05D002944 1.8e-13 80.5 130 39.2
FAN05G5668 Fragaria x ananassa HOM05D004563 ORTHO05D002944 2.4e-13 80.1 223 32.3
HanXRQChr17g0557991 Helianthus annuus HOM05D004563 ORTHO05D002944 2.4e-13 80.1 102 44.1
Actinidia11133 Actinidia chinensis HOM05D004563 ORTHO05D002944 3.1e-13 79.7 230 31.7
Cc05_g08130 Coffea canephora HOM05D004563 ORTHO05D002944 6.9e-13 78.6 138 38.4
Lsat_1_v5_gn_8_140081 Lactuca sativa HOM05D004563 ORTHO05D002944 6.9e-13 78.6 102 44.1
MD09G1239700 Malus domestica HOM05D004563 ORTHO05D002944 9.0e-13 78.2 243 31.3
SalBow7G0314 Salvia bowleyana HOM05D004563 ORTHO05D002944 1.2e-12 77.8 126 40.5
SGA_v2.0_scaffold9G04806 Striga asiatica HOM05D004563 ORTHO05D002944 1.2e-12 77.8 82 50.0
Aqoxy1G03185 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 1.5e-12 77.4 101 43.6
arahy.Tifrunner.gnm1.ann1.47XKI7 Arachis hypogaea HOM05D004563 ORTHO05D002944 1.5e-12 77.4 260 27.7
CSS0018366 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 1.5e-12 77.4 213 31.5
Sed0004710 Sechium edule HOM05D004563 ORTHO05D002944 1.5e-12 77.4 228 31.6
EL10Ac9g20912 Beta vulgaris HOM05D004563 ORTHO05D002944 2.6e-12 76.6 112 40.2
CSS0015057 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 2.6e-12 76.6 235 31.1
THA.LOC104800859 Tarenaya hassleriana HOM05D004563 ORTHO05D002944 2.6e-12 76.6 77 51.9
CARHR124710 Cardamine hirsuta HOM05D004563 ORTHO05D002944 3.4e-12 76.3 77 51.9
FAN09G1171 Fragaria x ananassa HOM05D004563 ORTHO05D002944 3.4e-12 76.3 221 32.1
AL4G26310 Arabidopsis lyrata HOM05D004563 ORTHO05D002944 5.9e-12 75.5 77 53.2
Glyma.12G122400 Glycine max HOM05D004563 ORTHO05D002944 5.9e-12 75.5 220 28.2
Nitab4.5_0010797g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 5.9e-12 75.5 101 39.6
Prupe.3G122900 Prunus persica HOM05D004563 ORTHO05D002944 5.9e-12 75.5 243 31.7
Oeu032703.1 Olea europaea HOM05D004563 ORTHO05D002944 1.0e-11 74.7 87 44.8
Rhsim04G0073900 Rhododendron simsii HOM05D004563 ORTHO05D002944 1.0e-11 74.7 76 50.0
Sp4g13600 Schrenkiella parvula HOM05D004563 ORTHO05D002944 1.0e-11 74.7 75 53.3
Solyc12g010830.2 Solanum lycopersicum HOM05D004563 ORTHO05D002944 1.0e-11 74.7 99 41.4
Sopen12g006190 Solanum pennellii HOM05D004563 ORTHO05D002944 1.0e-11 74.7 99 41.4
PGSC0003DMG400007808 Solanum tuberosum HOM05D004563 ORTHO05D002944 1.0e-11 74.7 99 41.4
CAN.G318.9 Capsicum annuum HOM05D004563 ORTHO05D002944 1.3e-11 74.3 99 40.4
FAN02G0553 Fragaria x ananassa HOM05D004563 ORTHO05D002944 1.3e-11 74.3 233 30.0
Actinidia10974 Actinidia chinensis HOM05D004563 ORTHO05D002944 1.7e-11 73.9 213 31.9
Ca_18892_v3 Cicer arietinum L. HOM05D004563 ORTHO05D002944 1.7e-11 73.9 133 35.3
Sed0020403 Sechium edule HOM05D004563 ORTHO05D002944 1.7e-11 73.9 249 32.5
Dinv15459 Davidia involucrata HOM05D004563 ORTHO05D002944 2.2e-11 73.6 246 30.9
Lalb_Chr19g0134931 Lupinus albus HOM05D004563 ORTHO05D002944 2.2e-11 73.6 80 46.2
Nitab4.5_0003827g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 2.2e-11 73.6 101 38.6
Psat7g166160 Pisum sativum HOM05D004563 ORTHO05D002944 2.2e-11 73.6 135 34.8
SalBow7G0936 Salvia bowleyana HOM05D004563 ORTHO05D002944 2.9e-11 73.2 129 38.8
arahy.Tifrunner.gnm1.ann1.B2LHN7 Arachis hypogaea HOM05D004563 ORTHO05D002944 3.8e-11 72.8 260 28.5
Ca_01462_v3 Cicer arietinum L. HOM05D004563 ORTHO05D002944 3.8e-11 72.8 232 28.4
Sc21g0003700 Simmondsia chinensis HOM05D004563 ORTHO05D002944 3.8e-11 72.8 125 38.4
FAN09G4605 Fragaria x ananassa HOM05D004563 ORTHO05D002944 5.0e-11 72.4 230 30.0
Solyc07g053320.4 Solanum lycopersicum HOM05D004563 ORTHO05D002944 5.0e-11 72.4 99 40.4
THA.LOC104800862 Tarenaya hassleriana HOM05D004563 ORTHO05D002944 5.0e-11 72.4 77 50.6
AT2G31130 Arabidopsis thaliana HOM05D004563 ORTHO05D002944 6.5e-11 72.0 77 50.6
BcaB02g10364 Brassica carinata HOM05D004563 ORTHO05D002944 6.5e-11 72.0 75 50.7
Carub.0004s1239 Capsella rubella HOM05D004563 ORTHO05D002944 6.5e-11 72.0 81 49.4
arahy.Tifrunner.gnm1.ann1.65XND6 Arachis hypogaea HOM05D004563 ORTHO05D002944 8.5e-11 71.6 118 38.1
Medtr4g079720 Medicago truncatula HOM05D004563 ORTHO05D002944 8.5e-11 71.6 232 31.5
PGSC0003DMG400020429 Solanum tuberosum HOM05D004563 ORTHO05D002944 8.5e-11 71.6 99 39.4
MSTRG.14316 Avicennia marina HOM05D004563 ORTHO05D002944 1.1e-10 71.2 99 39.4
Glyma.12G209700 Glycine max HOM05D004563 ORTHO05D002944 1.1e-10 71.2 250 27.2
MD17G1232800 Malus domestica HOM05D004563 ORTHO05D002944 1.1e-10 71.2 250 32.0
Nitab4.5_0000537g0100 Nicotiana tabacum HOM05D004563 ORTHO05D002944 1.1e-10 71.2 99 39.4
Sopen07g027280 Solanum pennellii HOM05D004563 ORTHO05D002944 1.1e-10 71.2 99 39.4
TPR.G30391 Trifolium pratense HOM05D004563 ORTHO05D002944 1.1e-10 71.2 185 32.4
unitig_747.g21618 Utricularia gibba HOM05D004563 ORTHO05D002944 1.1e-10 71.2 99 38.4
Nitab4.5_0006772g0010 Nicotiana tabacum HOM05D004563 ORTHO05D002944 1.4e-10 70.9 221 29.9
ClCG02G017950 Citrullus lanatus HOM05D004563 ORTHO05D002944 1.9e-10 70.5 248 30.2
BcaC02g11198 Brassica carinata HOM05D004563 ORTHO05D002944 2.5e-10 70.1 77 48.1
A04p23880 Brassica napus HOM05D004563 ORTHO05D002944 2.5e-10 70.1 75 50.7
BraA04t17911Z Brassica rapa HOM05D004563 ORTHO05D002944 2.5e-10 70.1 75 50.7
arahy.Tifrunner.gnm1.ann1.P6YWRU Arachis hypogaea HOM05D004563 ORTHO05D002944 3.2e-10 69.7 244 32.0
BcaB06g28418 Brassica carinata HOM05D004563 ORTHO05D002944 3.2e-10 69.7 140 38.6
Lj3g0000357 Lotus japonicus HOM05D004563 ORTHO05D002944 3.2e-10 69.7 253 27.7
C04p19350 Brassica napus HOM05D004563 ORTHO05D002944 5.5e-10 68.9 74 50.0
BolC4t23467H Brassica oleracea HOM05D004563 ORTHO05D002944 5.5e-10 68.9 74 50.0
VMungo1127G1865 Vigna mungo HOM05D004563 ORTHO05D002944 5.5e-10 68.9 215 28.4
AUR62038920 Chenopodium quinoa HOM05D004563 ORTHO05D002944 9.4e-10 68.2 77 46.8
Peaxi162Scf00384g00511 Petunia axillaris HOM05D004563 ORTHO05D002944 9.4e-10 68.2 99 37.4
Aa31LG5G5790 Aethionema arabicum HOM05D004563 ORTHO05D002944 1.2e-09 67.8 181 33.1
BcaB01g04062 Brassica carinata HOM05D004563 ORTHO05D002944 2.7e-09 66.6 75 46.7
Lj3g0023253 Lotus japonicus HOM05D004563 ORTHO05D002944 2.7e-09 66.6 244 29.9
TAR629G2655 Trochodendron aralioides HOM05D004563 ORTHO05D002944 3.6e-09 66.2 200 27.5
MELO3C019761.2 Cucumis melo HOM05D004563 ORTHO05D002944 4.6e-09 65.9 211 31.8
Phvul.011G134500 Phaseolus vulgaris HOM05D004563 ORTHO05D002944 4.6e-09 65.9 226 28.3
AUR62038995 Chenopodium quinoa HOM05D007922 ORTHO05D009490 6.1e-09 65.5 74 45.9
Hund00914 Selenicereus undatus HOM05D004563 ORTHO05D002944 6.1e-09 65.5 77 44.2
A05p14540 Brassica napus HOM05D004563 ORTHO05D002944 7.9e-09 65.1 122 37.7
CsaV3_6G018840 Cucumis sativus L. HOM05D004563 ORTHO05D002944 7.9e-09 65.1 211 31.8
BraA05t20385Z Brassica rapa HOM05D004563 ORTHO05D002944 1.0e-08 64.7 122 37.7
Thhalv10016698m.g Eutrema salsugineum HOM05D004563 ORTHO05D002944 1.0e-08 64.7 75 46.7
Peaxi162Scf00469g00139 Petunia axillaris HOM05D004563 ORTHO05D002944 1.4e-08 64.3 158 32.3
vmacro09501 Vaccinium macrocarpon HOM05D008023 ORTHO05D002944 1.4e-08 64.3 75 48.0
A03p17400 Brassica napus HOM05D004563 ORTHO05D002944 1.8e-08 63.9 75 42.7
BraA03t11011Z Brassica rapa HOM05D004563 ORTHO05D002944 1.8e-08 63.9 75 42.7
Medtr2g091180 Medicago truncatula HOM05D004563 ORTHO05D002944 1.8e-08 63.9 210 28.6
Cpa.g.sc209.31 Carica papaya HOM05D004563 ORTHO05D002944 3.0e-08 63.2 212 30.7
GSVIVG01014227001 Vitis vinifera HOM05D008023 ORTHO05D002944 3.0e-08 63.2 83 45.8
GSVIVG01020684001 Vitis vinifera HOM05D004563 ORTHO05D002944 5.1e-08 62.4 91 40.7
ATR0602G009 Amborella trichopoda HOM05D004563 ORTHO05D002944 8.8e-08 61.6 74 44.6
PSO675G1487 Papaver somniferum HOM05D004563 ORTHO05D002944 8.8e-08 61.6 102 37.3
Lalb_Chr03g0029881 Lupinus albus HOM05D004563 ORTHO05D002944 1.1e-07 61.2 221 27.6
Dinv14971 Davidia involucrata HOM05D000845 ORTHO05D003813 2.6e-07 60.1 74 44.6
Nn1g09097 Nelumbo nucifera HOM05D004563 ORTHO05D002944 4.4e-07 59.3 119 32.8
Prupe.4G170200 Prunus persica HOM05D008023 ORTHO05D002944 4.4e-07 59.3 76 40.8
Gorai.007G325900 Gossypium raimondii HOM05D008023 ORTHO05D002944 5.7e-07 58.9 82 36.6
Gorai.011G033900 Gossypium raimondii HOM05D004563 ORTHO05D002944 5.7e-07 58.9 138 34.8
Cpa.g.sc131.62 Carica papaya HOM05D008023 ORTHO05D002944 7.4e-07 58.5 78 38.5
Gohir.D10G032200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 7.4e-07 58.5 160 33.1
MBI07_g21399_MAGBIO Magnolia biondii HOM05D004563 ORTHO05D002944 7.4e-07 58.5 184 29.9
Phvul.005G096100 Phaseolus vulgaris HOM05D004563 ORTHO05D002944 7.4e-07 58.5 178 32.0
Gohir.A11G287000 Gossypium hirsutum HOM05D008023 ORTHO05D002944 9.7e-07 58.2 82 36.6
PSO541G0319 Papaver somniferum HOM05D004563 ORTHO05D002944 9.7e-07 58.2 102 36.3
MELO3C025631.2 Cucumis melo HOM05D008023 ORTHO05D002944 1.3e-06 57.8 75 41.3
CsaV3_4G033230 Cucumis sativus L. HOM05D008023 ORTHO05D010897 1.3e-06 57.8 78 39.7
Thecc.07G105200 Theobroma cacao HOM05D008023 ORTHO05D002944 1.3e-06 57.8 102 34.3
Lj1A833T49 Lonicera japonica HOM05D008023 ORTHO05D002944 1.7e-06 57.4 118 33.9
Dinv40663 Davidia involucrata HOM05D014353 ORTHO05D002944 2.2e-06 57.0 222 26.6
Phvul.011G159200 Phaseolus vulgaris HOM05D008023 ORTHO05D002944 2.2e-06 57.0 73 39.7
CSS0038794 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 2.8e-06 56.6 114 36.8
CSS0041377 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 2.8e-06 56.6 114 36.8
Glyma.06G231200 Glycine max HOM05D008023 ORTHO05D002944 2.8e-06 56.6 131 33.6
BcaB06g28496 Brassica carinata HOM05D004563 ORTHO05D002944 3.7e-06 56.2 102 41.2
BcaC01g05977 Brassica carinata HOM05D004563 ORTHO05D002944 3.7e-06 56.2 208 28.4
ClCG11G017550 Citrullus lanatus HOM05D008023 ORTHO05D002944 3.7e-06 56.2 75 41.3
CSS0035750 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 4.8e-06 55.8 136 32.4
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 4.8e-06 55.8 106 31.1
Gohir.D11G306100 Gossypium hirsutum HOM05D008023 ORTHO05D002944 4.8e-06 55.8 82 34.1
Medtr8g463800 Medicago truncatula HOM05D008023 ORTHO05D002944 4.8e-06 55.8 109 30.3
CSS0022203 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 6.3e-06 55.5 109 36.7
Sed0024688 Sechium edule HOM05D008023 ORTHO05D002944 8.2e-06 55.1 80 42.5


User provided reference genes

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