Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 2852.8 1444 100.0
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 2228.4 1264 90.3
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 2021.1 1474 72.3
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1946.4 1447 70.8
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1944.5 1481 69.8
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1908.3 1454 69.9
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1880.5 1434 69.1
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1879.0 1452 68.8
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1872.8 1458 68.0
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1869.7 1430 69.5
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1869.4 1481 68.3
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1867.8 1480 68.1
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1842.4 1455 66.9
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1830.8 1477 66.6
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1822.8 1478 66.2
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1817.7 1478 66.1
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1817.0 1477 66.5
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1791.2 1495 64.9
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1787.3 1497 64.7
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 1773.8 1472 65.4
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1768.4 1483 65.4
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1765.4 1460 65.1
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 1755.7 1480 64.8
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 1755.0 1464 64.5
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 1753.0 1456 65.2
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1743.4 1473 64.0
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1733.0 1446 64.5
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1722.2 1472 63.7
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1722.2 1480 63.0
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 1717.2 1537 61.9
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1708.0 1511 62.2
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1706.4 1431 64.8
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1703.0 1462 63.0
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1699.9 1511 61.9
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1698.7 1465 62.8
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 1695.6 1482 63.2
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1670.6 1474 61.0
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1668.7 1456 63.0
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1648.6 1518 62.1
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1621.3 1453 62.5
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1616.3 1453 62.8
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1607.8 1478 61.4
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1593.2 1475 59.5
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1576.6 1469 59.6
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1568.5 1475 60.3
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1567.7 1483 59.3
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1564.7 1457 59.4
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1562.7 1434 59.7
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1560.4 1492 58.2
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1557.3 1471 59.1
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 1555.4 1471 60.0
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1550.8 1487 58.6
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1547.3 1470 58.6
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1546.6 1523 58.1
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1544.3 1485 59.7
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1526.1 1253 67.0
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1522.7 1337 62.9
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1516.9 1375 60.4
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1516.9 1505 58.4
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 1508.0 1269 64.8
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1503.0 1490 57.9
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1492.6 1477 57.5
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 1491.5 1458 56.7
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1488.4 1454 57.2
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1481.5 1470 56.9
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1480.3 1489 57.0
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 1479.9 1456 56.7
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 1473.8 1456 56.9
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 1458.7 1452 57.0
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 1456.8 1448 56.4
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 1446.0 1450 55.5
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1442.6 1399 57.3
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1425.6 1445 55.3
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 0.0e+00 1422.9 1479 56.1
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1415.6 1454 54.9
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1413.7 1435 54.9
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 0.0e+00 1413.3 1456 54.9
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1410.6 1456 54.9
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1396.7 1448 54.8
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 1396.3 1448 54.8
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 0.0e+00 1343.9 1445 53.6
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 0.0e+00 1331.2 1387 54.3
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 0.0e+00 1328.2 1448 52.8
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1314.7 1318 57.5
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1298.1 1103 64.2
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 0.0e+00 1295.0 1452 50.6
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 0.0e+00 1259.6 1450 50.4
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1231.9 1085 63.3
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 0.0e+00 1227.2 1148 58.6
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1208.7 1302 54.5
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 0.0e+00 1201.8 1108 59.7
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 0.0e+00 1188.3 1152 58.9
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1146.7 913 66.6
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 0.0e+00 1131.3 1329 50.3
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 0.0e+00 1115.1 1311 49.7
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 0.0e+00 1095.5 1050 58.8
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 6.6e-258 895.2 1521 40.0
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 6.2e-256 888.6 1485 40.6
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 1.5e-254 884.0 946 54.4
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 7.6e-254 881.7 1531 40.1
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 2.9e-253 879.8 1002 51.4
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 1.8e-231 807.4 1531 37.6
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 7.2e-212 742.3 522 73.2
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 6.5e-205 719.2 832 50.5
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 3.1e-170 604.0 430 71.6
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 2.3e-165 587.8 1930 30.2
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 2.5e-164 584.3 649 54.9
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 2.6e-153 547.7 863 42.6
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 5.1e-149 533.5 582 54.0
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 4.9e-136 490.3 586 50.5
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 1.4e-135 488.8 462 60.0
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 3.0e-125 454.5 435 57.9
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 4.8e-115 420.6 1334 28.9
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 9.1e-90 336.7 349 54.2
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 1.8e-85 322.4 239 71.5
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 1.5e-84 319.3 771 36.2
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 2.6e-84 318.5 391 49.9
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 2.4e-74 285.4 286 56.3
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 2.8e-67 261.9 1125 27.1
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 7.8e-65 253.8 260 54.6
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 4.6e-41 174.9 169 62.7
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 2.1e-25 122.9 94 69.1
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 5.1e-24 118.2 85 69.4
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 2.5e-23 115.9 89 71.9
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 5.6e-23 114.8 89 68.5
Cpa.g.sc66.41 Carica papaya HOM05D005760 ORTHO05D007113 6.2e-22 111.3 85 63.5
Hma1.2p1_0004F.1_g004060 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 8.4e-19 100.9 103 55.3
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 5.4e-18 98.2 67 68.7
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 4.6e-17 95.1 75 61.3
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 4.6e-17 95.1 59 72.9
ATR0003G024 Amborella trichopoda HOM05D005760 ORTHO05D007113 1.3e-14 87.0 80 52.5
Lj4C503T2 Lonicera japonica HOM05D005760 ORTHO05D007113 1.2e-12 80.5 104 47.1
Cpa.g.sc66.40 Carica papaya HOM05D005760 ORTHO05D007113 2.9e-11 75.9 67 61.2
SEGI_08751 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 3.5e-09 68.9 71 52.1
SHI09014 Sapria himalayana HOM05D005760 ORTHO05D007113 1.0e-08 67.4 49 67.3


User provided reference genes

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