Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 1.0e-100 370.2 194 100.0
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 5.9e-85 317.8 164 100.0
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 3.2e-83 312.0 164 98.8
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 1.3e-79 300.1 158 93.7
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 1.3e-79 300.1 147 100.0
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 1.0e-68 263.8 167 87.4
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.7e-63 246.5 165 83.6
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.8e-60 235.3 165 78.8
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.9e-59 233.0 165 78.2
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.4e-46 189.5 148 70.3
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 3.5e-37 159.1 71 100.0
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 1.8e-25 120.2 104 59.6
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 3.1e-25 119.4 99 57.6
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 1.2e-24 117.5 101 56.4
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 2.0e-24 116.7 95 58.9
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 2.6e-24 116.3 95 58.9
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 2.6e-24 116.3 95 58.9
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 2.6e-24 116.3 95 58.9
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 2.6e-24 116.3 95 57.9
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 4.4e-24 115.5 96 59.4
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 4.4e-24 115.5 96 59.4
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 4.4e-24 115.5 96 59.4
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 7.6e-24 114.8 117 49.6
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 9.9e-24 114.4 84 67.9
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 9.9e-24 114.4 86 61.6
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 1.3e-23 114.0 97 58.8
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 1.7e-23 113.6 131 49.6
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 2.9e-23 112.8 104 53.8
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 2.9e-23 112.8 95 56.8
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 2.9e-23 112.8 95 57.9
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 2.9e-23 112.8 92 59.8
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 2.9e-23 112.8 92 59.8
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 3.8e-23 112.5 95 56.8
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 4.9e-23 112.1 109 52.3
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 6.4e-23 111.7 111 53.2
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 1.1e-22 110.9 79 60.8
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 1.9e-22 110.2 96 57.3
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 1.9e-22 110.2 90 54.4
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.9e-22 110.2 90 54.4
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.9e-22 110.2 90 54.4
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.9e-22 110.2 84 64.3
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 3.2e-22 109.4 84 60.7
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 5.4e-22 108.6 126 50.8
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 5.4e-22 108.6 88 63.6
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 7.1e-22 108.2 106 55.7
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 7.1e-22 108.2 84 64.3
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 7.1e-22 108.2 102 54.9
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 7.1e-22 108.2 102 54.9
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 7.1e-22 108.2 79 64.6
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 9.2e-22 107.8 173 39.3
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 1.2e-21 107.5 95 51.6
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 1.2e-21 107.5 95 51.6
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 1.6e-21 107.1 96 53.1
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 2.1e-21 106.7 79 60.8
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 3.5e-21 105.9 69 66.7
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 6.0e-21 105.1 99 51.5
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 6.0e-21 105.1 95 51.6
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 6.0e-21 105.1 139 44.6
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 7.8e-21 104.8 67 68.7
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.0e-20 104.4 76 59.2
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 1.0e-20 104.4 98 55.1
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 1.3e-20 104.0 112 50.0
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 5.1e-20 102.1 116 46.6
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 6.6e-20 101.7 76 60.5
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 6.6e-20 101.7 94 53.2
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 8.6e-20 101.3 133 45.9
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 1.1e-19 100.9 95 49.5
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 2.5e-19 99.8 86 52.3
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 2.5e-19 99.8 139 43.2
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 3.3e-19 99.4 124 45.2
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 3.3e-19 99.4 112 46.4
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 3.3e-19 99.4 112 46.4
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 4.3e-19 99.0 137 44.5
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 4.3e-19 99.0 80 58.8
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 7.3e-19 98.2 91 50.5
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 7.3e-19 98.2 100 49.0
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.2e-18 97.4 82 57.3
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 1.6e-18 97.1 97 52.6
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 2.8e-18 96.3 85 56.5
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 3.6e-18 95.9 80 57.5
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 4.7e-18 95.5 85 55.3
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 4.7e-18 95.5 64 59.4
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 4.7e-18 95.5 64 59.4
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 6.2e-18 95.1 95 49.5
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 6.2e-18 95.1 95 49.5
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 6.2e-18 95.1 143 38.5
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 8.1e-18 94.7 67 70.1
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.4e-17 93.2 72 62.5
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 4.0e-17 92.4 117 43.6
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 4.0e-17 92.4 100 49.0
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 1.5e-16 90.5 119 46.2
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 1.5e-16 90.5 76 55.3
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 2.0e-16 90.1 93 49.5
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 2.6e-16 89.7 75 54.7
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 2.6e-16 89.7 75 54.7
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 3.4e-16 89.4 96 47.9
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 4.4e-16 89.0 102 48.0
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 7.6e-16 88.2 116 42.2
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 7.6e-16 88.2 88 53.4
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 7.6e-16 88.2 90 47.8
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 1.3e-15 87.4 102 48.0
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 1.7e-15 87.0 71 56.3
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.7e-15 87.0 140 40.0
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 3.8e-15 85.9 64 62.5
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 3.8e-15 85.9 72 55.6
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 1.1e-14 84.3 87 51.7
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 5.4e-14 82.0 69 58.0
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 5.4e-14 82.0 69 58.0
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 7.1e-14 81.6 72 52.8
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.6e-13 80.5 89 47.2
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 3.5e-13 79.3 102 43.1
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 1.0e-12 77.8 123 40.7
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 1.7e-12 77.0 88 51.1
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 2.3e-12 76.6 53 67.9
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 2.3e-12 76.6 88 47.7
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 3.0e-12 76.3 61 59.0
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 3.9e-12 75.9 92 48.9
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 5.1e-12 75.5 96 45.8
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.1e-11 74.3 112 42.9
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 1.1e-11 74.3 75 52.0
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 1.9e-11 73.6 69 49.3
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 3.3e-11 72.8 56 53.6
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 3.3e-11 72.8 96 44.8
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 4.3e-11 72.4 103 43.7
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 4.3e-11 72.4 96 42.7
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 7.3e-11 71.6 96 43.8
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 9.6e-11 71.2 104 36.5
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 9.6e-11 71.2 53 54.7
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 8.1e-10 68.2 49 53.1
AagrBONN_evm.TU.Sc2ySwM_228.991 Anthoceros agrestis HOM05D004639 ORTHO05D005201 2.4e-09 66.6 101 40.6
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 1.7e-07 60.5 48 56.2
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 6.4e-07 58.5 52 46.2
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 8.4e-07 58.2 50 48.0
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 8.4e-07 58.2 49 53.1
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 4.2e-06 55.8 52 46.2


User provided reference genes

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