Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra19G0055900 Salix brachista HOM05D007231 ORTHO05D009024 3.4e-138 495.0 245 100.0
Potri.019G046400 Populus trichocarpa HOM05D007231 ORTHO05D009024 1.9e-128 462.6 245 92.7
Manes.05G074400 Manihot esculenta HOM05D007231 ORTHO05D009024 2.7e-103 379.0 250 76.0
Actinidia00741 Actinidia chinensis HOM05D007231 ORTHO05D009024 3.1e-99 365.5 250 72.8
CiPaw.08G104200 Carya illinoinensis HOM05D007231 ORTHO05D009024 6.9e-99 364.4 250 72.8
GSVIVG01011110001 Vitis vinifera HOM05D007231 ORTHO05D009024 2.6e-98 362.5 248 73.0
Dinv11248 Davidia involucrata HOM05D007231 ORTHO05D009024 5.9e-98 361.3 249 72.7
COL.COLO4_09128 Corchorus olitorius HOM05D007231 ORTHO05D009024 2.2e-97 359.4 250 73.6
QL12p022281 Quercus lobata HOM05D007231 ORTHO05D009024 6.5e-97 357.8 245 71.0
Gohir.D08G077400 Gossypium hirsutum HOM05D007231 ORTHO05D009024 8.5e-97 357.5 250 72.8
Gorai.004G082300 Gossypium raimondii HOM05D007231 ORTHO05D009024 1.9e-96 356.3 250 72.8
Thecc.01G282400 Theobroma cacao HOM05D007231 ORTHO05D009024 3.2e-96 355.5 250 72.4
Duzib211G0396 Durio zibethinus HOM05D007231 ORTHO05D009024 5.5e-96 354.8 250 72.0
Cfa006118 Carpinus fangiana HOM05D007231 ORTHO05D009024 1.2e-95 353.6 255 69.4
Rhsim13G0023500 Rhododendron simsii HOM05D007231 ORTHO05D009024 2.7e-95 352.4 250 70.0
Actinidia09146 Actinidia chinensis HOM05D007231 ORTHO05D009024 3.6e-95 352.1 250 72.4
Gohir.A08G069100 Gossypium hirsutum HOM05D007231 ORTHO05D009024 6.1e-95 351.3 250 71.6
Dinv32951 Davidia involucrata HOM05D007231 ORTHO05D009024 3.0e-94 349.0 253 70.0
TAR636G3122 Trochodendron aralioides HOM05D007231 ORTHO05D009024 3.0e-94 349.0 250 69.2
TAR365G1202 Trochodendron aralioides HOM05D007231 ORTHO05D009024 6.7e-94 347.8 250 69.2
Eucgr.K03384 Eucalyptus grandis HOM05D007231 ORTHO05D009024 1.1e-93 347.1 246 69.5
Atru.chr5.1389 Acer truncatum HOM05D007231 ORTHO05D009024 1.5e-93 346.7 250 69.6
Ciclev10021857m.g Citrus clementina HOM05D007231 ORTHO05D009024 5.7e-93 344.7 251 68.5
CANSAT25G1925 Cannabis sativa HOM05D007231 ORTHO05D009024 7.4e-93 344.4 250 70.4
vmacro02556 Vaccinium macrocarpon HOM05D007231 ORTHO05D009024 7.4e-93 344.4 250 68.4
Cc01_g19680 Coffea canephora HOM05D007231 ORTHO05D009024 2.2e-92 342.8 250 68.8
Nn1g02166 Nelumbo nucifera HOM05D007231 ORTHO05D009024 6.3e-92 341.3 248 70.6
CAN.G609.11 Capsicum annuum HOM05D007231 ORTHO05D009024 1.1e-91 340.5 249 65.1
Nitab4.5_0001028g0140 Nicotiana tabacum HOM05D007231 ORTHO05D009024 1.4e-91 340.1 250 66.0
Cpa.g.sc64.168 Carica papaya HOM05D007231 ORTHO05D009024 2.4e-91 339.3 248 68.5
PSO210G0158 Papaver somniferum HOM05D007231 ORTHO05D009024 3.1e-91 339.0 252 69.8
Peaxi162Scf00570g00058 Petunia axillaris HOM05D007231 ORTHO05D009024 1.2e-90 337.0 250 65.2
Solyc09g064930.3 Solanum lycopersicum HOM05D007231 ORTHO05D009024 2.9e-89 332.4 249 64.7
Sopen09g026640 Solanum pennellii HOM05D007231 ORTHO05D009024 2.9e-89 332.4 249 64.7
THA.LOC104801225 Tarenaya hassleriana HOM05D007231 ORTHO05D009024 1.1e-88 330.5 250 66.8
Prupe.8G243400 Prunus persica HOM05D007231 ORTHO05D009024 1.4e-88 330.1 251 68.5
SalBow4G2275 Salvia bowleyana HOM05D007231 ORTHO05D009024 1.9e-88 329.7 249 64.7
RcHm_v2.0_Chr6g0291381 Rosa chinensis HOM05D007231 ORTHO05D009024 2.5e-88 329.3 252 67.5
AT1G03250 Arabidopsis thaliana HOM05D007231 ORTHO05D009024 3.2e-88 328.9 247 66.0
AL1G12740 Arabidopsis lyrata HOM05D007231 ORTHO05D009024 4.2e-88 328.6 247 66.4
Oeu015959.1 Olea europaea HOM05D007231 ORTHO05D009024 2.1e-87 326.2 225 71.1
CARHR002550 Cardamine hirsuta HOM05D007231 ORTHO05D009024 2.7e-87 325.9 250 66.0
CsaV3_7G028660 Cucumis sativus L. HOM05D007231 ORTHO05D009024 2.7e-87 325.9 249 65.9
Lj5g0005680 Lotus japonicus HOM05D007231 ORTHO05D009024 2.7e-87 325.9 232 69.0
Nitab4.5_0002386g0100 Nicotiana tabacum HOM05D002055 ORTHO05D009024 2.7e-87 325.9 247 64.4
Aqoxy2G03271 Aquilegia oxysepala HOM05D007231 ORTHO05D009024 1.0e-86 323.9 225 69.8
Aa31LG1G9290 Aethionema arabicum HOM05D007231 ORTHO05D009024 3.0e-86 322.4 250 64.8
Glyma.10G025400 Glycine max HOM05D007231 ORTHO05D009024 3.0e-86 322.4 244 66.8
Oeu022878.1 Olea europaea HOM05D007231 ORTHO05D009024 3.0e-86 322.4 225 69.8
FvH4_2g23810 Fragaria vesca HOM05D007231 ORTHO05D009024 5.1e-86 321.6 253 66.4
MD11G1288600 Malus domestica HOM05D007231 ORTHO05D009024 5.1e-86 321.6 252 64.3
MBI19_g24716_MAGBIO Magnolia biondii HOM05D007231 ORTHO05D009024 8.8e-86 320.9 248 65.3
Carub.0001s0236 Capsella rubella HOM05D007231 ORTHO05D009024 1.1e-85 320.5 237 65.8
Phvul.007G170300 Phaseolus vulgaris HOM05D007231 ORTHO05D009024 9.7e-85 317.4 231 68.4
A10p01800 Brassica napus HOM05D007231 ORTHO05D009024 1.3e-84 317.0 250 64.0
Sp1g02240 Schrenkiella parvula HOM05D007231 ORTHO05D009024 1.3e-84 317.0 250 63.6
MSTRG.18222 Avicennia marina HOM05D007231 ORTHO05D009024 1.7e-84 316.6 250 63.6
MELO3C015851.2 Cucumis melo HOM05D007231 ORTHO05D009024 1.7e-84 316.6 220 70.0
Lj2C1175G18 Lonicera japonica HOM05D007231 ORTHO05D009024 3.7e-84 315.5 315 56.5
BcaC05g24637 Brassica carinata HOM05D007231 ORTHO05D009024 4.8e-84 315.1 250 64.0
FAN27G1680 Fragaria x ananassa HOM05D007231 ORTHO05D009024 4.8e-84 315.1 260 65.0
Lalb_Chr06g0163091 Lupinus albus HOM05D007231 ORTHO05D009024 6.3e-84 314.7 229 66.4
C05p01780 Brassica napus HOM05D007231 ORTHO05D009024 1.4e-83 313.5 220 69.5
arahy.Tifrunner.gnm1.ann1.9UA39Y Arachis hypogaea HOM05D007231 ORTHO05D009024 2.4e-83 312.8 251 64.9
arahy.Tifrunner.gnm1.ann1.LJDI86 Arachis hypogaea HOM05D007231 ORTHO05D009024 2.4e-83 312.8 251 64.9
Thhalv10008549m.g Eutrema salsugineum HOM05D007231 ORTHO05D009024 5.3e-83 311.6 255 62.4
HanXRQChr01g0002311 Helianthus annuus HOM05D007231 ORTHO05D009024 5.3e-83 311.6 220 66.4
Lalb_Chr02g0142831 Lupinus albus HOM05D007231 ORTHO05D009024 5.3e-83 311.6 229 65.5
BolC5t28956H Brassica oleracea HOM05D007231 ORTHO05D009024 1.5e-82 310.1 257 63.0
BraA10t42455Z Brassica rapa HOM05D007231 ORTHO05D009024 1.5e-82 310.1 250 62.8
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 2.0e-82 309.7 216 71.3
BcaC05g24551 Brassica carinata HOM05D007231 ORTHO05D009024 2.6e-82 309.3 250 63.2
Migut.D00275 Erythranthe guttata HOM05D007231 ORTHO05D009024 5.9e-82 308.1 251 62.2
Hund05352 Selenicereus undatus HOM05D007231 ORTHO05D009024 1.9e-80 303.1 249 63.1
Lsat_1_v5_gn_5_190100 Lactuca sativa HOM05D007231 ORTHO05D009024 9.4e-80 300.8 249 60.2
Ca_09766_v3 Cicer arietinum L. HOM05D002055 ORTHO05D002120 1.2e-79 300.4 238 61.3
HanXRQChr11g0327631 Helianthus annuus HOM05D007231 ORTHO05D009024 1.6e-79 300.1 220 65.0
Psat6g125920 Pisum sativum HOM05D007231 ORTHO05D009024 2.7e-79 299.3 241 62.7
SGA_v2.0_scaffold11G05804 Striga asiatica HOM05D002055 ORTHO05D002120 3.6e-79 298.9 258 57.4
Medtr1g072510 Medicago truncatula HOM05D007231 ORTHO05D009024 2.3e-78 296.2 218 66.5
CSS0040014 Camellia sinensis var. sinensis HOM05D007231 ORTHO05D009024 3.3e-77 292.4 189 74.1
ECA248G0248 Erigeron canadensis HOM05D002055 ORTHO05D002120 9.7e-77 290.8 217 64.5
FAN20G2044 Fragaria x ananassa HOM05D007231 ORTHO05D009024 9.7e-77 290.8 302 56.0
Sed0024964 Sechium edule HOM05D002055 ORTHO05D002120 1.7e-76 290.0 233 61.8
Duzib138G1636 Durio zibethinus HOM05D007231 ORTHO05D009024 1.8e-75 286.6 249 63.1
EL10Ac7g17220 Beta vulgaris HOM05D007231 ORTHO05D009024 2.4e-75 286.2 301 52.2
AUR62036799 Chenopodium quinoa HOM05D007231 ORTHO05D009024 1.2e-74 283.9 235 60.4
TWI14G0923 Tripterygium wilfordii HOM05D002055 ORTHO05D002120 2.6e-74 282.7 200 71.0
Ciclev10022442m.g Citrus clementina HOM05D007231 ORTHO05D009024 1.0e-73 280.8 187 72.2
SGA_v2.0_scaffold1G00456 Striga asiatica HOM05D007231 ORTHO05D009024 2.9e-73 279.3 250 55.2
PGR044G2216 Punica granatum HOM05D007231 ORTHO05D009024 9.4e-72 274.2 187 70.6
CDE04G0796 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 2.1e-71 273.1 225 60.9
unitig_0.g109 Utricularia gibba HOM05D007231 ORTHO05D009024 4.7e-71 271.9 212 60.4
ClCG09G006940 Citrullus lanatus HOM05D002055 ORTHO05D002120 2.4e-67 259.6 198 65.2
Os12g0144000 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 1.2e-66 257.3 242 52.5
Os11g0147100 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 2.7e-66 256.1 245 51.0
ATR0626G005 Amborella trichopoda HOM05D007231 ORTHO05D009024 3.2e-64 249.2 190 61.1
Zm00001eb342980 Zea mays HOM05D007231 ORTHO05D009024 7.2e-64 248.1 243 51.0
Zm00001eb196600 Zea mays HOM05D007231 ORTHO05D009024 4.4e-61 238.8 246 50.0
AUR62039907 Chenopodium quinoa HOM05D007231 ORTHO05D009024 1.9e-56 223.4 152 68.4
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 1.4e-54 217.2 207 56.0
Sc05g0004910 Simmondsia chinensis HOM05D007231 ORTHO05D009024 5.4e-51 205.3 165 63.0
TPR.G19967 Trifolium pratense HOM05D007231 ORTHO05D009024 3.7e-36 156.0 120 62.5
SEGI_15193 Sequoiadendron giganteum HOM05D007231 ORTHO05D009024 3.2e-35 152.9 219 41.1
Mapoly0057s0044 Marchantia polymorpha HOM05D007231 ORTHO05D009024 4.0e-30 136.0 177 42.9
SMO137G0298 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 7.8e-26 121.7 203 37.4
SMO170G0043 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 1.7e-25 120.6 203 36.9
AagrBONN_evm.TU.Sc2ySwM_117.667 Anthoceros agrestis HOM05D007231 ORTHO05D009024 2.3e-25 120.2 205 32.2
Pp3c4_28170 Physcomitrium patens HOM05D007231 ORTHO05D009024 1.6e-23 114.0 205 37.1
Cc01_g19320 Coffea canephora HOM05D007231 ORTHO05D009024 1.5e-21 107.5 137 46.7
MCO13G326 Micromonas commoda HOM05D007231 ORTHO05D009024 7.1e-19 98.6 197 33.5
Cre01.g040100 Chlamydomonas reinhardtii HOM05D007231 ORTHO05D009024 3.9e-17 92.8 167 31.7
BcaC05g24635 Brassica carinata HOM05D007231 ORTHO05D009024 1.1e-14 84.7 77 54.5
CDE02G1070 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 5.8e-13 79.0 113 39.8
TPR.G24733 Trifolium pratense HOM05D007231 ORTHO05D009024 8.4e-12 75.1 62 59.7
CDE02G2493 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 9.3e-11 71.6 64 59.4
TPR.G17639 Trifolium pratense HOM05D007231 ORTHO05D009024 8.1e-07 58.5 45 57.8
TPR.G23952 Trifolium pratense HOM05D007231 ORTHO05D009024 8.1e-07 58.5 45 57.8


User provided reference genes

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