Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra19G0054300 Salix brachista HOM05D007511 ORTHO05D003753 1.9e-80 302.4 148 100.0
Potri.019G043701 Populus trichocarpa HOM05D007511 ORTHO05D003753 6.5e-68 260.8 147 87.8
CiPaw.02G046500 Carya illinoinensis HOM05D007511 ORTHO05D003753 7.3e-27 124.4 144 49.3
Manes.08G158000 Manihot esculenta HOM05D007511 ORTHO05D003753 1.8e-25 119.8 141 46.1
TWI60G1247 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 3.4e-24 115.5 159 44.0
TWI34G0987 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 2.4e-22 109.4 158 42.4
MD07G1077000 Malus domestica HOM05D007511 ORTHO05D003753 6.6e-20 101.3 157 35.7
Atru.chr2.1724 Acer truncatum HOM05D007511 ORTHO05D003753 1.1e-19 100.5 138 39.9
Prupe.2G098000 Prunus persica HOM05D007511 ORTHO05D003753 1.1e-19 100.5 156 37.8
Ciclev10033674m.g Citrus clementina HOM05D007511 ORTHO05D003753 1.9e-19 99.8 152 40.1
FAN01G1810 Fragaria x ananassa HOM05D007511 ORTHO05D003753 2.1e-18 96.3 151 39.7
FAN03G1709 Fragaria x ananassa HOM05D007511 ORTHO05D003753 2.1e-18 96.3 151 39.1
Duzib177G0499 Durio zibethinus HOM05D007511 ORTHO05D003753 2.8e-18 95.9 159 36.5
MD02G1239600 Malus domestica HOM05D007511 ORTHO05D003753 2.8e-18 95.9 149 38.3
FvH4_7g07110 Fragaria vesca HOM05D007511 ORTHO05D003753 3.6e-18 95.5 170 37.6
Cfa000931 Carpinus fangiana HOM05D007511 ORTHO05D003753 4.7e-18 95.1 109 48.6
FAN06G3938 Fragaria x ananassa HOM05D007511 ORTHO05D003753 4.7e-18 95.1 170 37.6
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 4.7e-18 95.1 158 38.6
RcHm_v2.0_Chr1g0337051 Rosa chinensis HOM05D007511 ORTHO05D003753 6.2e-18 94.7 158 38.0
Thhalv10015688m.g Eutrema salsugineum HOM05D007511 ORTHO05D003753 1.1e-17 94.0 137 43.8
Sed0019168 Sechium edule HOM05D007511 ORTHO05D003753 1.1e-17 94.0 138 37.0
Ca_23172_v3 Cicer arietinum L. HOM05D007511 ORTHO05D003753 4.0e-17 92.0 151 39.7
Cpa.g.sc73.86 Carica papaya HOM05D007511 ORTHO05D003753 5.2e-17 91.7 139 41.0
Lj3g0008746 Lotus japonicus HOM05D007511 ORTHO05D003753 6.8e-17 91.3 131 45.8
Aa31LG11G12060 Aethionema arabicum HOM05D007511 ORTHO05D003753 1.2e-16 90.5 143 37.1
Medtr8g011160 Medicago truncatula HOM05D007511 ORTHO05D003753 1.5e-16 90.1 135 43.7
Carub.0006s1583 Capsella rubella HOM05D007511 ORTHO05D003753 4.4e-16 88.6 137 41.6
Eucgr.D00980 Eucalyptus grandis HOM05D007511 ORTHO05D003753 7.5e-16 87.8 146 37.7
Sp6g26630 Schrenkiella parvula HOM05D007511 ORTHO05D003753 7.5e-16 87.8 151 37.1
TAR629G3237 Trochodendron aralioides HOM05D007511 ORTHO05D003753 7.5e-16 87.8 133 37.6
AT5G17590 Arabidopsis thaliana HOM05D007511 ORTHO05D003753 2.2e-15 86.3 136 39.0
BcaB08g36759 Brassica carinata HOM05D007511 ORTHO05D003753 2.9e-15 85.9 138 39.1
TPR.G24583 Trifolium pratense HOM05D007511 ORTHO05D003753 3.7e-15 85.5 140 38.6
Glyma.16G082300 Glycine max HOM05D007511 ORTHO05D003753 6.4e-15 84.7 152 34.9
Psat0s409g0080 Pisum sativum HOM05D007511 ORTHO05D003753 6.4e-15 84.7 121 44.6
THA.LOC104802898 Tarenaya hassleriana HOM05D007511 ORTHO05D003753 6.4e-15 84.7 149 38.3
PGR004G1271 Punica granatum HOM05D007511 ORTHO05D003753 8.3e-15 84.3 134 34.3
AL6G28680 Arabidopsis lyrata HOM05D007511 ORTHO05D003753 1.1e-14 84.0 144 37.5
PSO782G3115 Papaver somniferum HOM05D007511 ORTHO05D003753 1.1e-14 84.0 135 37.0
Glyma.03G092200 Glycine max HOM05D007511 ORTHO05D003753 1.4e-14 83.6 140 39.3
BolC9t58796H Brassica oleracea HOM05D007511 ORTHO05D003753 2.4e-14 82.8 136 39.7
CsaV3_2G011030 Cucumis sativus L. HOM05D007511 ORTHO05D003753 2.4e-14 82.8 135 35.6
Lsat_1_v5_gn_7_35641 Lactuca sativa HOM05D007511 ORTHO05D003753 2.4e-14 82.8 151 33.8
Duzib128G1432 Durio zibethinus HOM05D007511 ORTHO05D003753 3.2e-14 82.4 153 35.9
BcaC04g18776 Brassica carinata HOM05D007511 ORTHO05D003753 4.1e-14 82.0 136 39.7
C09p59570 Brassica napus HOM05D007511 ORTHO05D003753 4.1e-14 82.0 136 39.7
Nn1g08946 Nelumbo nucifera HOM05D001418 ORTHO05D003753 5.4e-14 81.6 152 34.2
Psat4g207240 Pisum sativum HOM05D007511 ORTHO05D003753 5.4e-14 81.6 144 36.1
C02p09200 Brassica napus HOM05D007511 ORTHO05D003753 9.2e-14 80.9 150 38.0
Oeu032775.1 Olea europaea HOM05D007511 ORTHO05D003753 1.2e-13 80.5 101 42.6
CANSAT35G2046 Cannabis sativa HOM05D007511 ORTHO05D003753 1.6e-13 80.1 69 55.1
PSO063G5504 Papaver somniferum HOM05D007511 ORTHO05D003753 1.6e-13 80.1 140 35.0
Lalb_Chr07g0194541 Lupinus albus HOM05D007511 ORTHO05D003753 2.1e-13 79.7 137 40.9
Nn3g19224 Nelumbo nucifera HOM05D007511 ORTHO05D003753 2.7e-13 79.3 133 36.8
BraA02t05399Z Brassica rapa HOM05D007511 ORTHO05D003753 3.5e-13 79.0 150 37.3
BraA10t44242Z Brassica rapa HOM05D007511 ORTHO05D003753 3.5e-13 79.0 139 38.1
BcaC03g13529 Brassica carinata HOM05D007511 ORTHO05D003753 4.6e-13 78.6 147 36.7
A02p04350 Brassica napus HOM05D007511 ORTHO05D003753 4.6e-13 78.6 150 38.0
BolC2t06828H Brassica oleracea HOM05D007511 ORTHO05D003753 4.6e-13 78.6 147 36.7
TAR625G0656 Trochodendron aralioides HOM05D001418 ORTHO05D003753 4.6e-13 78.6 129 34.9
Oeu024951.1 Olea europaea HOM05D007511 ORTHO05D003753 7.8e-13 77.8 142 34.5
CARHR195590 Cardamine hirsuta HOM05D007511 ORTHO05D003753 1.0e-12 77.4 132 37.9
A10p21820 Brassica napus HOM05D007511 ORTHO05D003753 1.3e-12 77.0 139 37.4
MBI06_g35216_MAGBIO Magnolia biondii HOM05D007511 ORTHO05D003753 1.3e-12 77.0 107 38.3
Nn1g09148 Nelumbo nucifera HOM05D007511 ORTHO05D003753 1.3e-12 77.0 150 26.7
Sopen01g032800 Solanum pennellii HOM05D007511 ORTHO05D003753 1.7e-12 76.6 68 54.4
SGA_v2.0_scaffold5G03086 Striga asiatica HOM05D007511 ORTHO05D003753 3.0e-12 75.9 109 33.9
TAR381G0240 Trochodendron aralioides HOM05D001418 ORTHO05D004504 3.0e-12 75.9 161 32.9
PGSC0003DMG400043768 Solanum tuberosum HOM05D007511 ORTHO05D003753 3.9e-12 75.5 100 43.0
Migut.B01440 Erythranthe guttata HOM05D007511 ORTHO05D003753 6.6e-12 74.7 66 45.5
Nitab4.5_0004800g0110 Nicotiana tabacum HOM05D000001 ORTHO05D011953 6.6e-12 74.7 64 53.1
Thecc.05G230200 Theobroma cacao HOM05D007511 ORTHO05D003753 8.6e-12 74.3 144 34.7
Gohir.D11G235550 Gossypium hirsutum HOM05D007511 ORTHO05D003753 1.1e-11 73.9 65 43.1
HanXRQChr04g0119711 Helianthus annuus HOM05D007511 ORTHO05D003753 1.1e-11 73.9 139 32.4
HPP92_004456 Vanilla planifolia HOM05D001418 ORTHO05D003753 1.5e-11 73.6 143 35.0
Peaxi162Scf01343g00114 Petunia axillaris HOM05D007511 ORTHO05D003753 5.6e-11 71.6 146 28.8
Manes.12G158100 Manihot esculenta HOM05D001418 ORTHO05D003753 7.3e-11 71.2 139 31.7
Gorai.007G248300 Gossypium raimondii HOM05D007511 ORTHO05D003753 9.5e-11 70.9 64 42.2
Gohir.A11G221900 Gossypium hirsutum HOM05D007511 ORTHO05D003753 1.2e-10 70.5 137 30.7
Phvul.010G032800 Phaseolus vulgaris HOM05D007511 ORTHO05D003753 2.1e-10 69.7 132 40.2
Rhsim07G0046200 Rhododendron simsii HOM05D007511 ORTHO05D003753 1.1e-09 67.4 126 33.3
Ah.02g114820 Amaranthus hybridus HOM05D001418 ORTHO05D003753 1.4e-09 67.0 142 29.6
Aqoxy5G00551 Aquilegia oxysepala HOM05D007511 ORTHO05D003753 1.4e-09 67.0 130 35.4
Sc16g0009500 Simmondsia chinensis HOM05D001418 ORTHO05D003753 2.4e-09 66.2 126 33.3
vmacro13587 Vaccinium macrocarpon HOM05D007511 ORTHO05D003753 2.4e-09 66.2 141 29.8
CDE08G1405 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 6.8e-09 64.7 140 33.6
Sopen10g009620 Solanum pennellii HOM05D007511 ORTHO05D025904 8.9e-09 64.3 68 44.1
BolC3t13471H Brassica oleracea HOM05D007511 ORTHO05D003753 1.2e-08 63.9 71 47.9
Rhsim01G0134200 Rhododendron simsii HOM05D007511 ORTHO05D003753 1.2e-08 63.9 140 35.0
Solyc10g024480.1 Solanum lycopersicum HOM05D007511 ORTHO05D003753 1.2e-08 63.9 68 44.1
HPP92_025164 Vanilla planifolia HOM05D001418 ORTHO05D003753 1.2e-08 63.9 63 47.6
HPP92_025177 Vanilla planifolia HOM05D001418 ORTHO05D003753 1.2e-08 63.9 63 47.6
Aqoxy6G00297 Aquilegia oxysepala HOM05D007511 ORTHO05D003753 2.0e-08 63.2 143 32.2
TPR.G37392 Trifolium pratense HOM05D001418 ORTHO05D003753 3.4e-08 62.4 64 45.3
ATR1001G015 Amborella trichopoda HOM05D007511 ORTHO05D003753 4.4e-08 62.0 145 31.0
A03p08430 Brassica napus HOM05D007511 ORTHO05D003753 4.4e-08 62.0 71 46.5
BraA03t10166Z Brassica rapa HOM05D007511 ORTHO05D003753 4.4e-08 62.0 71 46.5
SalBow4G0080 Salvia bowleyana HOM05D007511 ORTHO05D003753 4.4e-08 62.0 67 43.3
SalBow4G2364 Salvia bowleyana HOM05D007511 ORTHO05D003753 4.4e-08 62.0 67 43.3
TAR628G0376 Trochodendron aralioides HOM05D001418 ORTHO05D003753 4.4e-08 62.0 66 40.9
Medtr8g094040 Medicago truncatula HOM05D001418 ORTHO05D003753 5.8e-08 61.6 64 45.3
BcaB01g05209 Brassica carinata HOM05D007511 ORTHO05D003753 7.6e-08 61.2 118 36.4
C03p09830 Brassica napus HOM05D007511 ORTHO05D003753 7.6e-08 61.2 118 36.4
CSS0038510 Camellia sinensis var. sinensis HOM05D007511 ORTHO05D003753 7.6e-08 61.2 74 41.9
Rhsim01G0134700 Rhododendron simsii HOM05D000002 ORTHO05D000001 7.6e-08 61.2 140 33.6
CiPaw.03G118500 Carya illinoinensis HOM05D001418 ORTHO05D003753 1.3e-07 60.5 72 40.3
Eucgr.H05149 Eucalyptus grandis HOM05D001418 ORTHO05D003753 1.3e-07 60.5 151 32.5
Phvul.009G155100 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 1.3e-07 60.5 76 39.5
Glyma.06G155400 Glycine max HOM05D001418 ORTHO05D003753 1.7e-07 60.1 66 39.4
Sed0024034 Sechium edule HOM05D001418 ORTHO05D003753 1.7e-07 60.1 67 43.3
CDE02G0326 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 2.2e-07 59.7 136 31.6
Psat7g044600 Pisum sativum HOM05D001418 ORTHO05D003753 2.2e-07 59.7 64 43.8
QL10p041674 Quercus lobata HOM05D001418 ORTHO05D003753 2.2e-07 59.7 64 42.2
Lalb_Chr13g0296701 Lupinus albus HOM05D001418 ORTHO05D003753 2.9e-07 59.3 56 46.4
Hma1.2p1_0353F.1_g133330 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 3.8e-07 58.9 65 43.1
QL04p052194 Quercus lobata HOM05D007511 ORTHO05D003753 4.9e-07 58.5 97 39.2
QL10p041864 Quercus lobata HOM05D001418 ORTHO05D003753 4.9e-07 58.5 111 32.4
Zm00001eb408450 Zea mays HOM05D001418 ORTHO05D003753 4.9e-07 58.5 63 46.0
Atru.chr4.944 Acer truncatum HOM05D001418 ORTHO05D003753 6.4e-07 58.2 67 38.8
AUR62029588 Chenopodium quinoa HOM05D001418 ORTHO05D003753 6.4e-07 58.2 152 29.6
Lj4g0007966 Lotus japonicus HOM05D001418 ORTHO05D003753 8.4e-07 57.8 79 40.5
Lalb_Chr07g0184281 Lupinus albus HOM05D001418 ORTHO05D003753 1.1e-06 57.4 64 40.6
Potri.005G066500 Populus trichocarpa HOM05D001418 ORTHO05D003753 1.1e-06 57.4 64 43.8
AUR62000505 Chenopodium quinoa HOM05D001418 ORTHO05D003753 1.9e-06 56.6 164 29.9
TWI79G1507 Tripterygium wilfordii HOM05D001418 ORTHO05D003753 1.9e-06 56.6 66 40.9
Lalb_Chr12g0203061 Lupinus albus HOM05D001418 ORTHO05D003753 2.4e-06 56.2 64 39.1
AUR62034848 Chenopodium quinoa HOM05D001418 ORTHO05D003753 3.2e-06 55.8 150 31.3
Os12g0182000 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D003753 3.2e-06 55.8 54 55.6
Glyma.04G210600 Glycine max HOM05D001418 ORTHO05D003753 4.2e-06 55.5 66 37.9
AUR62006850 Chenopodium quinoa HOM05D001418 ORTHO05D003753 5.4e-06 55.1 134 31.3
Migut.N01683 Erythranthe guttata HOM05D007511 ORTHO05D003753 5.4e-06 55.1 101 35.6
Sabra05G0054800 Salix brachista HOM05D001418 ORTHO05D003753 5.4e-06 55.1 64 40.6


User provided reference genes

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