Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 3.3e-234 814.7 412 100.0
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 1.8e-160 569.7 413 75.5
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 7.9e-156 554.3 432 71.3
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 1.5e-146 523.5 412 69.7
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 2.1e-132 476.5 413 63.2
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 6.1e-132 474.9 417 62.4
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 3.7e-129 465.7 413 62.2
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 4.8e-129 465.3 412 62.6
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 2.0e-127 459.9 413 62.7
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 7.7e-127 458.0 412 61.2
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 1.7e-126 456.8 411 61.3
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 2.2e-126 456.4 412 63.1
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 2.5e-125 453.0 413 61.0
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 7.2e-125 451.4 414 61.1
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 1.2e-124 450.7 413 60.8
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 2.1e-124 449.9 413 59.8
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.4e-122 442.2 412 60.4
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 2.2e-121 439.9 416 60.1
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 6.3e-121 438.3 404 60.9
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 2.4e-120 436.4 413 58.1
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 4.1e-120 435.6 415 59.5
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 5.4e-120 435.3 415 59.3
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 2.7e-119 433.0 413 57.6
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 4.5e-119 432.2 412 59.7
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 4.5e-119 432.2 415 59.0
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 7.7e-119 431.4 412 59.5
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 7.7e-119 431.4 414 58.9
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 3.8e-118 429.1 412 58.5
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.0e-118 428.7 412 59.7
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 6.6e-118 428.3 412 59.2
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 8.6e-118 427.9 416 58.9
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 9.5e-117 424.5 413 57.6
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 1.8e-115 420.2 414 58.5
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 4.0e-115 419.1 416 58.7
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 2.6e-114 416.4 413 57.4
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 9.8e-114 414.5 413 56.9
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.3e-113 414.1 412 57.5
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 4.1e-112 409.1 414 58.2
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 5.4e-112 408.7 414 58.2
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.4e-112 408.7 412 57.0
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 3.5e-111 406.0 412 56.8
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 4.6e-111 405.6 413 56.9
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 5.9e-111 405.2 413 58.4
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 1.3e-110 404.1 412 57.0
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 3.9e-110 402.5 419 56.8
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 2.1e-108 396.7 413 57.1
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 3.6e-108 396.0 414 56.0
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 6.2e-108 395.2 415 56.4
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 4.0e-107 392.5 414 55.1
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 5.2e-107 392.1 415 54.0
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 5.2e-107 392.1 415 56.9
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 6.8e-107 391.7 418 55.7
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 8.9e-107 391.3 415 55.7
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 3.4e-106 389.4 414 53.9
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 4.4e-106 389.0 420 56.2
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 9.8e-106 387.9 417 55.6
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 2.2e-105 386.7 414 55.1
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 3.7e-105 386.0 413 53.3
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 6.4e-105 385.2 413 53.8
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 1.1e-104 384.4 411 55.7
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 2.4e-104 383.3 413 56.9
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 3.2e-104 382.9 416 56.0
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 3.2e-104 382.9 414 53.1
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 3.5e-103 379.4 417 56.1
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 7.8e-103 378.3 413 54.2
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 1.0e-102 377.9 393 56.0
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 1.3e-102 377.5 412 55.3
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 3.9e-102 375.9 414 53.9
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 5.0e-102 375.6 413 53.0
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 1.1e-101 374.4 415 53.7
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 1.5e-101 374.0 412 52.7
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 7.3e-101 371.7 415 54.0
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 9.5e-101 371.3 414 53.1
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 1.2e-100 370.9 414 53.1
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 6.2e-100 368.6 414 52.7
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 6.2e-100 368.6 413 53.3
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 8.1e-100 368.2 418 54.1
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 1.1e-99 367.9 412 53.6
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 2.3e-99 366.7 365 58.4
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 6.8e-99 365.2 413 51.6
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.2e-98 364.4 414 54.6
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 9.8e-98 361.3 414 53.4
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 9.8e-98 361.3 418 53.6
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 9.8e-98 361.3 413 53.0
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 4.9e-97 359.0 409 51.6
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 2.4e-96 356.7 417 52.8
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 7.1e-96 355.1 414 53.9
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 1.6e-95 354.0 413 52.5
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 2.1e-95 353.6 414 50.5
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 2.7e-95 353.2 427 52.7
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 2.3e-94 350.1 413 51.1
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 2.3e-94 350.1 413 51.6
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 2.3e-94 350.1 412 50.0
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 3.0e-94 349.7 413 50.8
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 3.9e-94 349.4 412 51.7
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 3.9e-94 349.4 416 52.4
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 5.1e-94 349.0 413 50.8
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 1.5e-93 347.4 417 51.1
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 1.9e-93 347.1 349 54.7
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 2.5e-93 346.7 416 51.7
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 3.3e-93 346.3 415 52.0
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 9.5e-93 344.7 410 53.9
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 1.8e-91 340.5 247 70.9
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 5.8e-90 335.5 414 51.7
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 5.8e-90 335.5 413 51.3
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 3.7e-89 332.8 391 53.5
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 3.7e-89 332.8 250 73.6
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 7.1e-88 328.6 413 49.4
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 1.2e-87 327.8 414 50.7
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 2.1e-87 327.0 417 48.0
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 2.7e-87 326.6 415 50.6
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 7.8e-87 325.1 414 49.8
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 1.3e-86 324.3 406 48.5
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 2.3e-86 323.6 412 47.8
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 2.5e-85 320.1 414 49.3
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 3.3e-85 319.7 412 47.6
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 2.8e-84 316.6 415 49.2
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 2.8e-84 316.6 415 49.4
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 4.7e-84 315.8 415 49.4
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 8.1e-84 315.1 416 49.0
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.1e-83 314.7 412 46.6
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 1.1e-83 314.7 416 49.3
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 1.4e-83 314.3 414 49.8
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 1.4e-83 314.3 396 49.7
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 1.8e-83 313.9 394 49.5
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 1.8e-83 313.9 394 49.5
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 2.4e-83 313.5 426 46.7
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 2.6e-82 310.1 396 49.2
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 3.4e-82 309.7 419 47.0
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 5.8e-82 308.9 417 47.5
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 1.3e-81 307.8 418 47.6
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 4.9e-81 305.8 414 48.8
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 4.9e-81 305.8 413 47.9
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 4.9e-81 305.8 413 47.9
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 3.5e-79 299.7 413 47.9
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 3.5e-79 299.7 418 45.5
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 4.6e-79 299.3 413 47.9
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 4.6e-79 299.3 413 47.9
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.3e-76 291.2 412 46.1
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 5.3e-75 285.8 331 51.7
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 2.9e-73 280.0 249 63.9
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 2.1e-63 247.3 208 67.3
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 3.8e-57 226.5 412 41.3
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 4.6e-55 219.5 324 42.6
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 4.3e-53 213.0 405 39.0
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 4.3e-45 186.4 417 33.6
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 1.9e-40 171.0 391 35.3
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 2.2e-28 131.0 452 28.5
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 2.8e-28 130.6 155 54.2
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 3.7e-28 130.2 132 53.8
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 2.7e-23 114.0 156 45.5
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 4.8e-20 103.2 113 54.9
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 4.8e-12 76.6 65 58.5
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 6.5e-09 66.2 186 29.0
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.5e-08 65.1 233 26.6
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 2.5e-08 64.3 42 81.0


User provided reference genes

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