Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra19G0037800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2565.8 1297 100.0
Sabra19G0034800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2556.9 1297 99.6
Potri.019G025200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2437.5 1301 95.2
Potri.013G051200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2353.2 1301 91.9
Manes.09G145500 Manihot esculenta HOM05D002281 ORTHO05D005599 0.0e+00 2281.9 1301 88.4
Thecc.05G264800 Theobroma cacao HOM05D002281 ORTHO05D005599 0.0e+00 2253.8 1302 87.0
Cfa006304 Carpinus fangiana HOM05D002281 ORTHO05D005599 0.0e+00 2251.1 1303 86.9
Atru.chr2.1138 Acer truncatum HOM05D002281 ORTHO05D005599 0.0e+00 2244.9 1302 87.1
Gorai.013G119000 Gossypium raimondii HOM05D002281 ORTHO05D005599 0.0e+00 2242.6 1302 86.4
Gohir.A13G102900 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2239.9 1302 86.4
Gohir.D13G106101 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2238.4 1302 86.2
CSS0028465 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D005599 0.0e+00 2231.8 1303 86.0
Dinv05786 Davidia involucrata HOM05D002281 ORTHO05D005599 0.0e+00 2228.4 1303 86.3
CiPaw.07G076600 Carya illinoinensis HOM05D002281 ORTHO05D005599 0.0e+00 2224.5 1303 86.1
Prupe.6G354800 Prunus persica HOM05D002281 ORTHO05D005599 0.0e+00 2223.0 1301 85.5
GSVIVG01026355001 Vitis vinifera HOM05D002281 ORTHO05D005599 0.0e+00 2223.0 1317 85.0
CANSAT54G0020 Cannabis sativa HOM05D002281 ORTHO05D005599 0.0e+00 2221.8 1303 85.3
TWI60G0078 Tripterygium wilfordii HOM05D002281 ORTHO05D005599 0.0e+00 2218.4 1302 85.5
FvH4_6g01330 Fragaria vesca HOM05D002281 ORTHO05D005599 0.0e+00 2214.9 1301 85.4
Duzib106G1897 Durio zibethinus HOM05D002281 ORTHO05D005599 0.0e+00 2206.0 1302 85.8
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2201.4 1305 85.1
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2200.6 1301 85.0
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2197.2 1314 84.2
Eucgr.B02169 Eucalyptus grandis HOM05D002281 ORTHO05D005599 0.0e+00 2190.2 1308 84.2
TAR362G0445 Trochodendron aralioides HOM05D002281 ORTHO05D005599 0.0e+00 2182.9 1301 84.0
COL.COLO4_38179 Corchorus olitorius HOM05D002281 ORTHO05D005599 0.0e+00 2180.6 1298 84.4
Glyma.19G250600 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2168.3 1304 84.5
Glyma.03G253000 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2167.1 1304 84.7
PGR142G2635 Punica granatum HOM05D002281 ORTHO05D005599 0.0e+00 2166.7 1303 83.2
Medtr7g116590 Medicago truncatula HOM05D002281 ORTHO05D005599 0.0e+00 2160.2 1310 83.9
arahy.Tifrunner.gnm1.ann1.KCE1UK Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2156.3 1341 82.6
Phvul.006G107600 Phaseolus vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2156.3 1304 84.1
Lj1g0020458 Lotus japonicus HOM05D002281 ORTHO05D005599 0.0e+00 2155.6 1304 83.8
Hma1.2p1_0153F.1_g067890 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 2154.8 1308 83.6
Ciclev10023801m.g Citrus clementina HOM05D002281 ORTHO05D005599 0.0e+00 2154.4 1310 84.0
Sabra13G0046600 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2153.6 1558 74.3
AT5G18410 Arabidopsis thaliana HOM05D002281 ORTHO05D005599 0.0e+00 2138.2 1301 82.2
THA.LOC104820753 Tarenaya hassleriana HOM05D002281 ORTHO05D005599 0.0e+00 2137.8 1301 82.3
Thhalv10012457m.g Eutrema salsugineum HOM05D002281 ORTHO05D005599 0.0e+00 2137.5 1302 82.5
Carub.0006s1667 Capsella rubella HOM05D002281 ORTHO05D005599 0.0e+00 2136.7 1301 82.2
VMungo0540G0745 Vigna mungo HOM05D002281 ORTHO05D005599 0.0e+00 2136.7 1304 83.2
CARHR194610 Cardamine hirsuta HOM05D002281 ORTHO05D005599 0.0e+00 2132.8 1301 82.0
AL6G29660 Arabidopsis lyrata HOM05D002281 ORTHO05D005599 0.0e+00 2130.5 1305 81.9
ECA233G3880 Erigeron canadensis HOM05D002281 ORTHO05D005599 0.0e+00 2130.5 1301 82.7
BolC3t13512H Brassica oleracea HOM05D002281 ORTHO05D005599 0.0e+00 2130.1 1310 81.6
Solyc11g013280.1 Solanum lycopersicum HOM05D002281 ORTHO05D005599 0.0e+00 2129.8 1304 81.9
Sed0017844 Sechium edule HOM05D002281 ORTHO05D005599 0.0e+00 2126.7 1311 82.1
Sopen11g008300 Solanum pennellii HOM05D002281 ORTHO05D005599 0.0e+00 2125.5 1301 82.2
BraA03t10208Z Brassica rapa HOM05D002281 ORTHO05D005599 0.0e+00 2121.7 1308 81.5
HanXRQChr04g0111671 Helianthus annuus HOM05D002281 ORTHO05D005599 0.0e+00 2114.7 1318 81.2
Nn1g03089 Nelumbo nucifera HOM05D002281 ORTHO05D005599 0.0e+00 2111.6 1297 81.3
MSTRG.1472 Avicennia marina HOM05D002281 ORTHO05D005599 0.0e+00 2107.8 1304 81.1
SalBow7G0462 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2107.8 1304 81.0
Migut.C01166 Erythranthe guttata HOM05D002281 ORTHO05D005599 0.0e+00 2104.7 1304 81.0
Ca_09474_v3 Cicer arietinum L. HOM05D002281 ORTHO05D005599 0.0e+00 2101.6 1327 81.4
Sp6g25910 Schrenkiella parvula HOM05D002281 ORTHO05D005599 0.0e+00 2098.9 1304 81.2
Haze_04485 Corylus avellana HOM05D002281 ORTHO05D005599 0.0e+00 2097.8 1323 81.6
Lsat_1_v5_gn_8_2941 Lactuca sativa HOM05D002281 ORTHO05D005599 0.0e+00 2097.0 1301 81.9
Aqoxy5G01434 Aquilegia oxysepala HOM05D002281 ORTHO05D005599 0.0e+00 2095.1 1303 80.1
arahy.Tifrunner.gnm1.ann1.T4Q4MP Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2093.5 1309 82.2
Sc09g0001770 Simmondsia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 2090.5 1303 80.3
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2088.5 1303 81.5
SalBow7G2659 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2085.5 1304 80.4
A03p08830 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2082.0 1314 79.8
Nitab4.5_0000494g0100 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 2080.4 1300 81.0
PSO674G0074 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2077.4 1302 79.6
C03p10320 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2074.3 1311 80.1
PSO170G6144 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2069.3 1302 79.4
EL10Ac4g09788 Beta vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2054.6 1299 79.5
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 0.0e+00 2038.1 1314 78.8
SGA_v2.0_scaffold52G18996 Striga asiatica HOM05D002281 ORTHO05D005599 0.0e+00 1998.4 1229 81.1
Nitab4.5_0000051g0330 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 1991.1 1421 73.3
Aa31LG11G11220 Aethionema arabicum HOM05D002281 ORTHO05D005599 0.0e+00 1960.3 1300 77.6
Hund07164 Selenicereus undatus HOM05D002281 ORTHO05D005599 0.0e+00 1940.6 1237 78.2
Cc10_g10590 Coffea canephora HOM05D002281 ORTHO05D005599 0.0e+00 1939.9 1190 81.3
Os03g0143800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D005599 0.0e+00 1899.8 1306 73.4
Zm00001eb003550 Zea mays HOM05D002281 ORTHO05D005599 0.0e+00 1863.2 1305 71.9
AUR62000642 Chenopodium quinoa HOM05D002281 ORTHO05D005599 0.0e+00 1740.3 1330 69.8
RcHm_v2.0_Chr3g0448901 Rosa chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1657.1 946 85.3
Cpa.g.sc51.37 Carica papaya HOM05D002281 ORTHO05D005599 0.0e+00 1632.1 977 84.6
Psat0s3583g0040 Pisum sativum HOM05D002281 ORTHO05D005599 0.0e+00 1595.9 971 84.3
Actinidia03823 Actinidia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1581.2 907 84.7
Rhsim05G0168900 Rhododendron simsii HOM05D002281 ORTHO05D005599 0.0e+00 1557.0 1085 75.1
MELO3C015463.2 Cucumis melo HOM05D002281 ORTHO05D005599 0.0e+00 1553.9 936 81.0
Lalb_Chr18g0044201 Lupinus albus HOM05D002281 ORTHO05D005599 0.0e+00 1552.7 914 84.1
HPP92_013019 Vanilla planifolia HOM05D002281 ORTHO05D005599 0.0e+00 1531.2 1228 64.6
Mapoly0078s0045 Marchantia polymorpha HOM05D002281 ORTHO05D005599 0.0e+00 1521.5 1301 58.6
CsaV3_1G040360 Cucumis sativus L. HOM05D002281 ORTHO05D005599 0.0e+00 1510.4 910 81.1
ClCG03G011410 Citrullus lanatus HOM05D002281 ORTHO05D005599 0.0e+00 1501.9 909 80.7
AagrBONN_evm.TU.Sc2ySwM_344.4016 Anthoceros agrestis HOM05D002281 ORTHO05D005599 0.0e+00 1500.0 1305 58.6
unitig_736.g22260 Utricularia gibba HOM05D002281 ORTHO05D005599 0.0e+00 1495.7 1194 65.8
MD12G1252900 Malus domestica HOM05D002281 ORTHO05D005599 0.0e+00 1471.8 837 85.8
Pp3c21_8020 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1469.1 1345 56.4
Peaxi162Scf00285g00226 Petunia axillaris HOM05D002281 ORTHO05D005599 0.0e+00 1451.4 911 78.4
SMO348G0052 Selaginella moellendorffii HOM05D002281 ORTHO05D005599 0.0e+00 1437.2 1305 55.8
DCAR_005524 Daucus carota HOM05D002281 ORTHO05D005599 0.0e+00 1388.2 955 73.4
Pp3c2_6040 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1335.5 1319 52.7
ATR0787G096 Amborella trichopoda HOM05D002281 ORTHO05D005599 0.0e+00 1274.2 916 68.2
Hma1.2p1_0153F.1_g067920 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 1112.8 703 81.1
Ah.06g188740 Amaranthus hybridus HOM05D002281 ORTHO05D005599 5.4e-259 898.7 827 59.1
CAN.G61.7 Capsicum annuum HOM05D002281 ORTHO05D005599 8.1e-255 884.8 803 59.4
Lj2A49T37 Lonicera japonica HOM05D002281 ORTHO05D005599 1.8e-230 803.9 488 84.0
SHI14430 Sapria himalayana HOM05D002281 ORTHO05D005599 7.4e-200 702.2 552 67.2
AUR62006997 Chenopodium quinoa HOM05D002281 ORTHO05D005599 2.4e-198 697.2 515 72.8
MD12G1252700 Malus domestica HOM05D002281 ORTHO05D005599 2.2e-196 690.6 464 78.9
CDE01G0796 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 1.4e-166 591.7 452 66.6
Actinidia03824 Actinidia chinensis HOM05D002281 ORTHO05D005599 1.3e-164 585.1 347 89.6
SEGI_41506 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 6.5e-164 582.8 436 68.3
RcHm_v2.0_Chr3g0448911 Rosa chinensis HOM05D002281 ORTHO05D005599 3.3e-163 580.5 347 88.5
Psat0s2603g0080 Pisum sativum HOM05D002281 ORTHO05D005599 7.0e-158 562.8 335 81.5
Lalb_Chr18g0044191 Lupinus albus HOM05D002281 ORTHO05D005599 4.5e-157 560.1 347 85.3
CDE01G0576 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 7.8e-157 559.3 381 71.9
CAN.G61.6 Capsicum annuum HOM05D002281 ORTHO05D005599 1.0e-156 558.9 347 85.6
ATR0787G220 Amborella trichopoda HOM05D002281 ORTHO05D005599 1.5e-152 545.0 347 83.0
Cpa.g.sc51.41 Carica papaya HOM05D002281 ORTHO05D005599 3.2e-150 537.3 302 85.8
ClCG03G011400 Citrullus lanatus HOM05D002281 ORTHO05D005599 2.7e-149 534.3 343 84.0
CsaV3_1G040370 Cucumis sativus L. HOM05D002281 ORTHO05D005599 1.5e-144 518.5 343 80.8
CBR_g23328 Chara braunii HOM05D002281 ORTHO05D005599 6.4e-143 513.1 650 42.9
vmacro19963 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 2.1e-130 471.5 393 69.0
Peaxi162Scf00285g00225 Petunia axillaris HOM05D002281 ORTHO05D005599 6.4e-127 459.9 274 88.0
CAN.G61.8 Capsicum annuum HOM05D002281 ORTHO05D005599 1.9e-126 458.4 410 60.2
HPP92_013016 Vanilla planifolia HOM05D002281 ORTHO05D005599 6.2e-122 443.4 305 70.8
DCAR_005525 Daucus carota HOM05D002281 ORTHO05D005599 4.6e-117 427.2 253 87.7
Lj2A49G34 Lonicera japonica HOM05D002281 ORTHO05D005599 6.6e-116 423.3 243 84.8
Haze_04492 Corylus avellana HOM05D002281 ORTHO05D005599 2.4e-105 388.3 274 78.5
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 3.0e-100 371.3 276 73.2
HPP92_013015 Vanilla planifolia HOM05D002281 ORTHO05D005599 5.1e-100 370.5 347 59.7
arahy.Tifrunner.gnm1.ann1.I7KFZB Arachis hypogaea HOM05D002281 ORTHO05D005599 6.7e-100 370.2 316 69.0
SEGI_00068 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.6e-85 322.4 264 61.4
vmacro19965 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 2.0e-75 288.9 166 83.1
CBR_g23326 Chara braunii HOM05D002281 ORTHO05D005599 6.5e-71 273.9 465 34.0
Hma1.2p1_0153F.1_g067900 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 2.7e-69 268.5 154 90.9
Ah.06g188770 Amaranthus hybridus HOM05D002281 ORTHO05D005599 2.0e-59 235.7 134 88.1
vmacro19966 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 9.7e-59 233.4 426 38.0
Lj2A50T26 Lonicera japonica HOM05D002281 ORTHO05D005599 6.3e-58 230.7 133 83.5
SHI14432 Sapria himalayana HOM05D002281 ORTHO05D005599 4.1e-57 228.0 142 77.5
Lj2A49G35 Lonicera japonica HOM05D002281 ORTHO05D005599 2.9e-55 221.9 127 83.5
Cc10_g10600 Coffea canephora HOM05D002281 ORTHO05D005599 1.8e-52 212.6 130 84.6
Lj2A49T38 Lonicera japonica HOM05D002281 ORTHO05D005599 1.7e-50 206.1 119 82.4
CBR_g74560 Chara braunii HOM05D002281 ORTHO05D005599 4.1e-41 174.9 161 54.7
BraA03t10210Z Brassica rapa HOM05D002281 ORTHO05D005599 5.4e-41 174.5 123 74.0
CDE02G3044 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 9.2e-41 173.7 127 65.4
Gorai.007G272700 Gossypium raimondii HOM05D002281 ORTHO05D005599 2.5e-38 165.6 98 79.6
Gohir.D11G253675 Gossypium hirsutum HOM05D002281 ORTHO05D005599 1.6e-37 162.9 98 78.6
A03p08860 Brassica napus HOM05D002281 ORTHO05D005599 1.2e-35 156.8 123 67.5
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 2.2e-34 152.5 123 68.3
SEGI_02952 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 2.4e-33 149.1 113 63.7
SEGI_33538 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.1e-30 140.2 95 63.2
Gohir.D11G253550 Gossypium hirsutum HOM05D002281 ORTHO05D005599 3.1e-28 132.1 75 81.3
Gorai.007G272500 Gossypium raimondii HOM05D002281 ORTHO05D005599 3.1e-28 132.1 75 80.0
SEGI_28731 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 7.5e-27 127.5 85 69.4
Gohir.A11G244201 Gossypium hirsutum HOM05D002281 ORTHO05D005599 1.4e-25 123.2 73 75.3
Nn6g32299 Nelumbo nucifera HOM05D002281 ORTHO05D005599 1.3e-23 116.7 73 76.7
SHI14427 Sapria himalayana HOM05D000030 ORTHO05D000009 1.7e-23 116.3 130 53.1
arahy.Tifrunner.gnm1.ann1.57298L Arachis hypogaea HOM05D002281 ORTHO05D005599 6.0e-16 91.3 114 50.9
HPP92_013017 Vanilla planifolia HOM05D002281 ORTHO05D005599 3.9e-15 88.6 54 77.8
Ah.06g188760 Amaranthus hybridus HOM05D002281 ORTHO05D006774 1.1e-09 70.5 142 36.6
QL06p040095 Quercus lobata HOM05D002281 ORTHO05D005599 3.2e-09 68.9 77 53.2
vmacro19964 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 2.7e-08 65.9 35 82.9


User provided reference genes

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