Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra19G0036100 Salix brachista HOM05D006063 ORTHO05D000023 0.0e+00 1402.1 740 100.0
Sabra19G0039200 Salix brachista HOM05D006063 ORTHO05D000023 0.0e+00 1378.2 740 97.4
Potri.019G029400 Populus trichocarpa HOM05D006063 ORTHO05D000023 0.0e+00 1217.6 762 87.4
Manes.09G145100 Manihot esculenta HOM05D006063 ORTHO05D000023 2.9e-209 732.6 776 57.2
Thecc.05G261400 Theobroma cacao HOM05D006063 ORTHO05D000023 7.5e-157 558.5 731 50.2
TWI34G0066 Tripterygium wilfordii HOM05D006063 ORTHO05D000023 1.5e-152 544.3 719 50.3
Ciclev10019009m.g Citrus clementina HOM05D006063 ORTHO05D000023 3.2e-147 526.6 730 47.5
MD04G1235500 Malus domestica HOM05D006063 ORTHO05D000023 3.5e-146 523.1 716 46.2
Gorai.013G118800 Gossypium raimondii HOM05D006063 ORTHO05D000023 4.9e-140 502.7 722 45.6
CANSAT54G1152 Cannabis sativa HOM05D006063 ORTHO05D000023 5.4e-139 499.2 720 45.1
Gohir.D13G106000 Gossypium hirsutum HOM05D006063 ORTHO05D000023 7.1e-139 498.8 722 45.2
Cpa.g.sc51.61 Carica papaya HOM05D006063 ORTHO05D000023 6.0e-138 495.7 522 52.9
FAN09G4822 Fragaria x ananassa HOM05D006063 ORTHO05D000023 6.0e-138 495.7 711 45.7
Prupe.6G355400 Prunus persica HOM05D006063 ORTHO05D000023 1.0e-137 495.0 682 46.3
TAR362G1155 Trochodendron aralioides HOM05D006063 ORTHO05D000023 6.2e-135 485.7 740 45.3
FvH4_6g01260 Fragaria vesca HOM05D006063 ORTHO05D000023 2.2e-132 477.2 709 45.1
FAN05G0856 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.9e-131 474.2 712 44.9
FAN02G3689 Fragaria x ananassa HOM05D006063 ORTHO05D000023 3.0e-129 466.8 710 44.5
vmacro10365 Vaccinium macrocarpon HOM05D006063 ORTHO05D000023 2.8e-127 460.3 718 43.6
CSS0004581 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 8.1e-127 458.8 744 41.9
Aqoxy2G04022 Aquilegia oxysepala HOM05D006063 ORTHO05D000023 1.2e-125 454.9 713 42.5
Hund07147 Selenicereus undatus HOM05D006063 ORTHO05D000023 2.0e-125 454.1 725 43.9
Actinidia34754 Actinidia chinensis HOM05D006063 ORTHO05D000023 4.6e-122 443.0 689 44.3
MELO3C010119.2 Cucumis melo HOM05D006063 ORTHO05D000023 6.0e-122 442.6 721 41.7
SHI14775 Sapria himalayana HOM05D006063 ORTHO05D000023 3.9e-121 439.9 477 51.8
Eucgr.H04160 Eucalyptus grandis HOM05D006063 ORTHO05D000023 7.4e-120 435.6 655 44.7
CsaV3_1G044890 Cucumis sativus L. HOM05D006063 ORTHO05D000023 2.8e-119 433.7 713 40.5
Rhsim09G0137100 Rhododendron simsii HOM05D006063 ORTHO05D000023 3.7e-119 433.3 757 41.5
Sed0026121 Sechium edule HOM05D006063 ORTHO05D000023 2.2e-116 424.1 728 40.4
EL10Ac4g09796 Beta vulgaris HOM05D006063 ORTHO05D000023 2.9e-116 423.7 726 42.0
THA.LOC104820746 Tarenaya hassleriana HOM05D006063 ORTHO05D000023 2.5e-115 420.6 711 39.7
ClCG03G011330 Citrullus lanatus HOM05D006063 ORTHO05D000023 1.6e-114 417.9 784 38.6
Sc16g0010060 Simmondsia chinensis HOM05D006063 ORTHO05D000023 4.6e-114 416.4 728 41.8
Cc09_g03150 Coffea canephora HOM05D006063 ORTHO05D000023 3.0e-113 413.7 609 43.7
Sp3g03130 Schrenkiella parvula HOM05D006063 ORTHO05D000023 1.9e-112 411.0 693 40.4
Thhalv10020148m.g Eutrema salsugineum HOM05D006063 ORTHO05D000023 4.8e-111 406.4 622 42.4
CARHR078300 Cardamine hirsuta HOM05D006063 ORTHO05D000023 4.1e-110 403.3 704 38.5
Nitab4.5_0000504g0070 Nicotiana tabacum HOM05D006063 ORTHO05D000023 1.5e-109 401.4 698 41.7
Aa31LG5G14700 Aethionema arabicum HOM05D006063 ORTHO05D000023 2.6e-109 400.6 710 39.6
Carub.0003s0342 Capsella rubella HOM05D006063 ORTHO05D000023 2.9e-108 397.1 611 42.7
AL3G14090 Arabidopsis lyrata HOM05D006063 ORTHO05D000023 5.0e-108 396.4 694 39.9
PSO017G2613 Papaver somniferum HOM05D006063 ORTHO05D000023 2.5e-107 394.0 647 41.9
PSO063G1700 Papaver somniferum HOM05D006063 ORTHO05D000023 4.6e-106 389.8 708 38.7
Nitab4.5_0004201g0010 Nicotiana tabacum HOM05D006063 ORTHO05D000023 8.8e-105 385.6 699 40.9
AUR62005299 Chenopodium quinoa HOM05D006063 ORTHO05D000765 1.3e-103 381.7 650 40.3
AT3G04160 Arabidopsis thaliana HOM05D006063 ORTHO05D000023 1.7e-103 381.3 694 39.8
BcaB04g19349 Brassica carinata HOM05D006063 ORTHO05D000023 4.8e-103 379.8 682 37.8
FAN05G5389 Fragaria x ananassa HOM05D006063 ORTHO05D000023 5.3e-102 376.3 544 46.3
Peaxi162Scf00071g01413 Petunia axillaris HOM05D006063 ORTHO05D000023 5.9e-101 372.9 577 44.4
Lsat_1_v5_gn_9_46040 Lactuca sativa HOM05D006063 ORTHO05D000023 5.0e-100 369.8 700 38.4
CAN.G4.18 Capsicum annuum HOM05D006063 ORTHO05D000023 6.5e-100 369.4 697 39.5
PGSC0003DMG400015112 Solanum tuberosum HOM05D006063 ORTHO05D000023 6.5e-100 369.4 705 39.6
MBI07_g04744_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 4.2e-99 366.7 736 37.9
Solyc04g050760.4 Solanum lycopersicum HOM05D006063 ORTHO05D000023 1.2e-98 365.2 701 38.8
Sopen04g021710 Solanum pennellii HOM05D006063 ORTHO05D000023 3.6e-98 363.6 704 39.1
C03p40730 Brassica napus HOM05D006063 ORTHO05D000023 6.7e-97 359.4 684 36.4
A03p33520 Brassica napus HOM05D006063 ORTHO05D000023 1.5e-96 358.2 567 40.2
Glyma.10G169000 Glycine max HOM05D006063 ORTHO05D000023 5.7e-96 356.3 704 37.4
Lalb_Chr21g0311331 Lupinus albus HOM05D006063 ORTHO05D000023 1.3e-95 355.1 684 38.5
BraA03t12527Z Brassica rapa HOM05D006063 ORTHO05D000023 1.7e-95 354.8 567 39.9
Migut.F02045 Erythranthe guttata HOM05D006063 ORTHO05D000023 2.2e-95 354.4 720 37.5
CiPaw.07G075500 Carya illinoinensis HOM05D006063 ORTHO05D000023 4.1e-94 350.1 490 46.7
BcaC01g04385 Brassica carinata HOM05D006063 ORTHO05D000023 9.1e-94 349.0 566 39.2
VMungo0720G1344 Vigna mungo HOM05D006063 ORTHO05D000023 5.9e-93 346.3 701 36.8
arahy.Tifrunner.gnm1.ann1.JVQ2Z4 Arachis hypogaea HOM05D006063 ORTHO05D000023 2.9e-92 344.0 711 37.3
BolC3t16339H Brassica oleracea HOM05D006063 ORTHO05D000023 2.5e-91 340.9 599 38.4
Ca_09979_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 9.4e-91 339.0 708 36.7
Ca_09995_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 9.4e-91 339.0 708 36.7
arahy.Tifrunner.gnm1.ann1.2N7XA4 Arachis hypogaea HOM05D006063 ORTHO05D000023 1.6e-90 338.2 711 36.7
Oeu010183.1 Olea europaea HOM05D006063 ORTHO05D000023 2.1e-90 337.8 595 40.0
Lj3g0014127 Lotus japonicus HOM05D006063 ORTHO05D000023 2.7e-90 337.4 703 36.7
ATR0618G015 Amborella trichopoda HOM05D006063 ORTHO05D000023 1.4e-89 335.1 745 35.7
MSTRG.9222 Avicennia marina HOM05D006063 ORTHO05D000023 1.8e-89 334.7 642 39.3
Phvul.L001648 Phaseolus vulgaris HOM05D006063 ORTHO05D000023 4.4e-88 330.1 704 36.8
Gohir.A13G102800 Gossypium hirsutum HOM05D006063 ORTHO05D000023 5.7e-88 329.7 511 44.4
QL07p027196 Quercus lobata HOM05D006063 ORTHO05D000023 3.1e-86 323.9 886 34.0
HanXRQChr15g0491401 Helianthus annuus HOM05D006063 ORTHO05D000023 1.6e-85 321.6 702 36.2
SalBow1G3325 Salvia bowleyana HOM05D006063 ORTHO05D000023 2.0e-85 321.2 759 36.8
Lj2A50T27 Lonicera japonica HOM05D006063 ORTHO05D000023 2.2e-84 317.8 397 47.6
Medtr1g079470 Medicago truncatula HOM05D006063 ORTHO05D000023 2.5e-83 314.3 702 36.0
SalBow1G1068 Salvia bowleyana HOM05D006063 ORTHO05D000023 1.6e-82 311.6 756 36.0
Haze_04487 Corylus avellana HOM05D006063 ORTHO05D000023 1.4e-81 308.5 701 36.8
SGA_v2.0_scaffold62G21476 Striga asiatica HOM05D006063 ORTHO05D000023 4.0e-81 307.0 714 35.3
MBI18_g19284_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 1.3e-79 302.0 400 46.2
Atru.chr2.1232 Acer truncatum HOM05D006063 ORTHO05D000023 6.3e-79 299.7 363 49.0
Hma1.2p1_0153F.1_g067880 Hydrangea macrophylla HOM05D006063 ORTHO05D000023 5.9e-77 293.1 418 44.5
CSS0046279 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 1.3e-76 292.0 530 40.6
Dinv03784 Davidia involucrata HOM05D006063 ORTHO05D000023 1.7e-76 291.6 448 42.4
RcHm_v2.0_Chr3g0448821 Rosa chinensis HOM05D006063 ORTHO05D000023 2.6e-64 251.1 383 46.0
GSVIVG01026370001 Vitis vinifera HOM05D006063 ORTHO05D000023 2.6e-56 224.6 334 48.2
MBI18_g46979_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 1.6e-53 215.3 516 37.2
COL.COLO4_20542 Corchorus olitorius HOM05D006063 ORTHO05D000023 1.1e-51 209.1 346 46.2
ECA232G4499 Erigeron canadensis HOM05D006063 ORTHO05D000023 9.5e-51 206.1 445 36.2
A05p43190 Brassica napus HOM05D006063 ORTHO05D000023 2.1e-50 204.9 292 44.2
Zm00001eb086400 Zea mays HOM05D006063 ORTHO05D000023 1.4e-49 202.2 552 32.2
SMO351G0027 Selaginella moellendorffii HOM05D006063 ORTHO05D000023 1.1e-46 192.6 590 27.5
Os04g0349401 Oryza sativa ssp. japonica HOM05D006063 ORTHO05D000023 7.1e-46 189.9 445 36.2
Atru.chr2.1231 Acer truncatum HOM05D006063 ORTHO05D000023 3.5e-45 187.6 182 59.3
TPR.G10281 Trifolium pratense HOM05D006063 ORTHO05D000023 3.5e-45 187.6 360 35.8
AagrBONN_evm.TU.Sc2ySwM_362.520 Anthoceros agrestis HOM05D006063 ORTHO05D000023 1.0e-44 186.0 606 28.7
FvH4_5g38930 Fragaria vesca HOM05D006063 ORTHO05D000023 3.0e-44 184.5 269 48.3
CDE05G2869 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 5.1e-44 183.7 206 46.1
Pp3c17_4760 Physcomitrium patens HOM05D006063 ORTHO05D000023 4.3e-43 180.6 620 29.2
Psat6g141160 Pisum sativum HOM05D006063 ORTHO05D000023 5.6e-43 180.3 384 37.5
Mapoly0001s0430 Marchantia polymorpha HOM05D006063 ORTHO05D000023 1.3e-36 159.1 742 26.8
HPP92_006233 Vanilla planifolia HOM05D006063 ORTHO05D000023 2.3e-36 158.3 350 38.9
HPP92_006232 Vanilla planifolia HOM05D006063 ORTHO05D000023 6.6e-36 156.8 237 39.2
CDE05G3203 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 1.2e-34 152.5 331 37.5
RcHm_v2.0_Chr3g0448831 Rosa chinensis HOM05D006063 ORTHO05D000023 2.1e-26 125.2 150 44.0
DCAR_005531 Daucus carota HOM05D006063 ORTHO05D000023 8.1e-26 123.2 289 31.5
A05p43200 Brassica napus HOM05D000005 ORTHO05D000449 4.0e-25 120.9 282 37.2
CsaV3_1G044530 Cucumis sativus L. HOM05D006063 ORTHO05D000023 3.8e-23 114.4 206 40.3
BraA05t23062Z Brassica rapa HOM05D006063 ORTHO05D000023 7.1e-22 110.2 87 66.7
Cpa.g.sc51.65 Carica papaya HOM05D006063 ORTHO05D000023 1.7e-20 105.5 303 31.4
SEGI_40887 Sequoiadendron giganteum HOM05D006063 ORTHO05D000023 4.8e-18 97.4 295 32.2
C05p62930 Brassica napus HOM05D000005 ORTHO05D000294 4.6e-13 80.9 130 40.0
MBI18_g46978_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 7.9e-13 80.1 274 28.5
Cpa.g.sc51.64 Carica papaya HOM05D006063 ORTHO05D000023 2.1e-10 72.0 108 40.7
TPR.G14651 Trifolium pratense HOM05D006063 ORTHO05D000023 2.1e-10 72.0 235 31.5
BcaC05g30213 Brassica carinata HOM05D006063 ORTHO05D000023 4.0e-09 67.8 48 72.9
Dinv03778 Davidia involucrata HOM05D006063 ORTHO05D045100 5.8e-08 63.9 259 30.1
Dinv03782 Davidia involucrata HOM05D006063 ORTHO05D045148 7.6e-08 63.5 40 80.0
FAN08G2149 Fragaria x ananassa HOM05D006063 ORTHO05D000023 4.2e-06 57.8 277 30.7
FAN04G1450 Fragaria x ananassa HOM05D006063 ORTHO05D000023 9.3e-06 56.6 63 52.4


User provided reference genes

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