Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 0.0e+00 1126.3 561 100.0
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 0.0e+00 1120.9 561 99.1
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 3.0e-307 1057.7 561 93.9
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 4.2e-293 1010.7 516 97.5
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 6.1e-292 1006.9 509 98.4
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 2.4e-280 968.4 561 86.1
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 1.2e-268 929.5 564 83.9
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 9.1e-264 913.3 561 80.4
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 3.5e-263 911.4 563 80.5
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 5.6e-261 904.0 563 80.3
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 7.2e-261 903.7 565 79.6
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 4.7e-260 901.0 563 80.1
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 1.0e-259 899.8 565 80.4
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 4.0e-259 897.9 564 79.1
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 1.3e-257 892.9 561 79.3
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 3.7e-257 891.3 569 78.0
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 3.1e-251 871.7 562 78.1
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 5.2e-251 870.9 567 77.4
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 6.8e-251 870.5 567 77.4
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 3.4e-250 868.2 568 77.3
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 2.2e-249 865.5 527 81.8
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 1.7e-246 855.9 525 80.6
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 6.6e-246 854.0 567 74.4
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 5.6e-245 850.9 567 73.9
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 1.6e-244 849.4 567 74.1
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 2.1e-244 849.0 552 77.0
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 2.3e-243 845.5 565 75.2
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 5.2e-243 844.3 567 74.3
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.2e-242 843.2 573 74.0
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 2.6e-242 842.0 524 79.4
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 1.3e-241 839.7 570 73.5
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 1.9e-240 835.9 524 78.8
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 2.4e-240 835.5 562 75.3
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.6e-239 832.8 524 78.6
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.0e-238 830.1 524 78.4
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.0e-238 830.1 524 78.4
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 3.0e-238 828.6 529 78.1
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 3.9e-238 828.2 572 73.3
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 3.9e-238 828.2 550 76.5
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 8.6e-238 827.0 562 75.1
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 1.9e-237 825.9 572 73.1
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 4.3e-237 824.7 567 71.6
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 5.6e-237 824.3 563 73.5
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 2.8e-236 822.0 562 74.2
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 6.2e-236 820.8 513 79.5
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 8.1e-236 820.5 562 74.2
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 1.4e-235 819.7 562 74.0
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 2.3e-235 818.9 562 74.0
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 4.0e-235 818.1 563 74.4
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 8.9e-235 817.0 531 76.1
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 8.9e-235 817.0 567 72.8
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 1.5e-234 816.2 529 75.8
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 2.0e-234 815.8 563 74.2
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 3.4e-234 815.1 567 72.3
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 5.8e-234 814.3 562 73.7
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 1.3e-233 813.1 543 74.8
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 5.4e-232 807.7 550 74.9
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 7.1e-232 807.4 557 72.4
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 7.1e-232 807.4 512 78.1
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 1.6e-231 806.2 512 77.7
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 2.1e-231 805.8 562 73.1
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 2.1e-231 805.8 529 75.4
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 2.7e-231 805.4 550 73.6
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 1.7e-230 802.7 562 71.7
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 1.7e-230 802.7 563 71.9
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 3.9e-230 801.6 519 76.5
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 2.5e-229 798.9 562 72.1
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 3.3e-229 798.5 548 73.5
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 2.4e-227 792.3 558 71.5
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 2.6e-226 788.9 573 68.8
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 8.4e-225 783.9 558 70.3
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 1.9e-224 782.7 563 71.0
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 3.2e-224 781.9 564 71.6
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 9.3e-224 780.4 561 70.2
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 6.0e-223 777.7 562 71.0
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 1.7e-222 776.2 532 72.4
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 3.0e-222 775.4 562 70.3
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 5.1e-222 774.6 541 71.3
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 8.7e-222 773.9 562 70.1
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 1.1e-221 773.5 558 70.1
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.5e-221 773.1 591 68.4
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 3.3e-221 771.9 562 70.1
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 3.3e-221 771.9 521 75.4
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 7.3e-221 770.8 556 70.1
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 7.3e-221 770.8 535 72.0
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 2.1e-220 769.2 532 71.8
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 1.4e-219 766.5 561 69.2
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 5.3e-219 764.6 561 69.0
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 9.0e-219 763.8 639 63.2
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 1.2e-218 763.5 556 69.1
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 5.8e-218 761.1 482 75.3
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 9.9e-218 760.4 555 70.8
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 6.4e-217 757.7 531 71.8
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 1.1e-216 756.9 561 68.6
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 2.4e-216 755.7 574 66.4
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 3.5e-215 751.9 558 68.3
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 3.5e-215 751.9 558 68.3
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 3.0e-214 748.8 559 68.0
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 8.7e-214 747.3 517 73.9
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 1.1e-213 746.9 551 69.1
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 1.9e-213 746.1 561 67.7
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 1.9e-213 746.1 536 69.6
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 3.3e-213 745.3 499 74.3
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 4.3e-213 745.0 572 66.4
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 2.1e-212 742.7 561 67.6
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 2.8e-212 742.3 559 69.4
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 8.1e-212 740.7 571 66.4
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 2.4e-211 739.2 572 65.6
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 5.3e-211 738.0 546 68.5
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 6.9e-211 737.6 549 68.5
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 4.9e-209 731.5 570 68.6
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 2.4e-208 729.2 556 67.8
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 1.0e-206 723.8 475 74.3
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 2.3e-206 722.6 548 67.3
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.0e-202 709.5 562 66.4
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 3.4e-202 708.8 421 81.5
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 1.7e-201 706.4 511 70.1
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 1.3e-196 690.3 561 66.0
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 4.3e-189 665.2 554 62.5
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 1.1e-187 660.6 575 60.0
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 2.2e-185 652.9 415 74.9
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 7.2e-184 647.9 579 59.4
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 8.5e-169 597.8 537 60.3
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 1.9e-168 596.7 512 60.4
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 4.2e-168 595.5 562 59.3
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 7.2e-168 594.7 435 71.7
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 2.7e-167 592.8 564 56.4
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 3.7e-164 582.4 514 60.5
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 4.2e-160 568.9 373 76.7
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 3.4e-157 559.3 580 53.4
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 1.0e-153 547.7 426 67.8
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 7.5e-149 531.6 559 52.6
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.2e-146 524.2 354 75.4
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 5.7e-141 505.4 576 49.0
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 1.0e-137 494.6 582 48.3
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 6.8e-134 481.9 375 66.4
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.5e-133 480.7 480 54.8
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 9.2e-131 471.5 558 47.8
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 1.4e-123 447.6 389 63.0
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 1.5e-101 374.4 440 52.3
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 4.5e-101 372.9 319 57.1
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 1.8e-97 360.9 547 40.0
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 3.4e-93 346.7 516 40.9
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 7.9e-74 282.3 164 86.6
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 5.1e-65 253.1 333 48.0
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 6.1e-58 229.6 238 53.8
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 8.8e-57 225.7 147 79.6
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 5.7e-56 223.0 472 31.8
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 8.2e-55 219.2 162 77.2
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 2.2e-47 194.5 475 31.2
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 4.5e-45 186.8 111 82.0
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 7.7e-45 186.0 435 31.5
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 1.3e-44 185.3 91 93.4
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 7.2e-43 179.5 376 35.6
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 5.2e-41 173.3 164 55.5
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 1.5e-40 171.8 123 66.7
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 6.3e-39 166.4 421 31.6
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 2.4e-38 164.5 155 60.0
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 1.3e-36 158.7 131 60.3
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 3.2e-22 110.9 86 59.3
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 1.6e-21 108.6 160 41.9
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 1.2e-13 82.4 41 90.2
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.1e-11 75.9 39 87.2
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 7.3e-11 73.2 38 84.2
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 2.8e-10 71.2 98 42.9
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 2.3e-09 68.2 44 70.5
HPP92_017571 Vanilla planifolia HOM05D005323 ORTHO05D006820 5.2e-09 67.0 293 24.6
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 8.9e-09 66.2 33 81.8
HPP92_028318 Vanilla planifolia HOM05D005323 ORTHO05D006820 3.7e-07 60.8 190 25.8
Mapoly0049s0059 Marchantia polymorpha HOM05D005323 ORTHO05D006820 1.4e-06 58.9 190 25.3
Nitab4.5_0002913g0040 Nicotiana tabacum HOM05D005323 ORTHO05D006820 3.2e-06 57.8 187 24.6


User provided reference genes

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