Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 3.2e-259 897.9 448 100.0
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 1.2e-253 879.4 448 98.0
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 1.6e-218 762.7 448 86.2
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 1.5e-160 570.1 436 64.4
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 7.5e-160 567.8 436 64.7
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 7.5e-160 567.8 436 64.7
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 1.7e-159 566.6 428 66.4
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 6.6e-156 554.7 431 65.2
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 5.8e-152 541.6 384 69.3
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 1.3e-151 540.4 392 66.8
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 3.7e-151 538.9 355 74.4
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 4.6e-149 531.9 428 61.9
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 4.6e-149 531.9 392 66.3
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 7.8e-149 531.2 392 66.3
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 3.3e-147 525.8 383 66.8
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 4.0e-145 518.8 418 62.4
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 6.8e-145 518.1 392 64.3
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 2.0e-144 516.5 387 65.1
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 3.4e-144 515.8 388 66.2
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 3.8e-143 512.3 387 67.7
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 4.9e-143 511.9 387 64.1
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 6.4e-143 511.5 393 67.4
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 3.5e-141 505.8 370 68.9
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 3.5e-141 505.8 388 63.1
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 7.8e-141 504.6 392 64.0
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 1.1e-139 500.7 355 70.7
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 3.3e-139 499.2 355 70.7
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 1.7e-135 486.9 329 72.0
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 2.4e-134 483.0 385 62.1
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 4.6e-133 478.8 387 63.6
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 6.0e-133 478.4 364 64.0
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 3.0e-132 476.1 384 61.2
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 1.5e-131 473.8 384 61.2
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 9.6e-131 471.1 370 63.0
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 2.4e-129 466.5 387 59.9
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 2.4e-129 466.5 387 59.9
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 6.9e-129 464.9 354 64.1
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 6.9e-129 464.9 334 68.6
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 2.9e-127 459.5 300 74.3
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 4.9e-127 458.8 386 60.6
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 1.1e-126 457.6 369 61.2
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 3.2e-126 456.1 386 59.8
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 3.2e-126 456.1 384 59.6
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 7.9e-125 451.4 355 63.7
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 1.3e-124 450.7 444 53.6
MD13G1233100 Malus domestica HOM05D007036 ORTHO05D008885 4.8e-122 442.2 421 55.3
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 6.2e-122 441.8 370 59.2
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 8.1e-122 441.4 433 55.2
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 1.1e-121 441.0 370 60.5
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 2.4e-121 439.9 327 65.1
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 1.5e-120 437.2 386 56.7
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 3.4e-120 436.0 287 73.5
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 4.5e-120 435.6 430 51.9
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 4.5e-120 435.6 345 62.3
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 2.2e-119 433.3 399 54.4
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 3.8e-119 432.6 389 55.3
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 2.5e-118 429.9 403 54.6
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 1.6e-117 427.2 315 65.4
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 2.7e-117 426.4 387 55.8
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 3.5e-117 426.0 391 55.2
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 3.5e-117 426.0 378 56.6
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 7.9e-117 424.9 384 56.2
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 7.9e-117 424.9 334 62.9
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 1.8e-116 423.7 370 58.6
TPR.G36679 Trifolium pratense HOM05D007036 ORTHO05D008885 3.0e-116 422.9 335 63.0
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 3.9e-116 422.5 387 55.8
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 3.9e-116 422.5 375 58.1
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 6.7e-116 421.8 387 55.6
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 2.1e-114 416.8 314 65.6
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 2.1e-114 416.8 392 53.1
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 2.8e-114 416.4 324 63.0
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 3.7e-114 416.0 335 61.5
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 6.2e-114 415.2 371 56.6
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 6.2e-114 415.2 348 58.3
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 6.2e-114 415.2 349 60.2
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 8.2e-114 414.8 322 63.0
CSS0018855 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 3.1e-113 412.9 329 64.1
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 9.0e-113 411.4 382 54.5
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 3.8e-111 406.0 383 53.8
Thhalv10003041m.g Eutrema salsugineum HOM05D007036 ORTHO05D008885 1.6e-106 390.6 392 51.5
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 3.7e-106 389.4 372 54.8
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 4.8e-106 389.0 334 58.4
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 1.4e-105 387.5 355 56.1
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 2.0e-104 383.6 353 57.8
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 4.5e-104 382.5 395 51.9
Medtr5g068170 Medicago truncatula HOM05D007036 ORTHO05D008885 1.7e-103 380.6 328 60.4
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 4.2e-102 375.9 246 72.4
SGA_v2.0_scaffold318G48469 Striga asiatica HOM05D007036 ORTHO05D008885 2.3e-100 370.2 382 51.0
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 1.7e-98 364.0 383 49.6
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 1.7e-95 354.0 246 67.5
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 8.5e-95 351.7 353 51.6
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 3.6e-93 346.3 232 70.3
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 3.6e-93 346.3 332 52.4
COL.COLO4_04221 Corchorus olitorius HOM05D007036 ORTHO05D008885 1.4e-92 344.4 394 51.0
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 2.0e-91 340.5 304 57.6
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 2.6e-91 340.1 332 51.8
CDE04G2486 Ceratophyllum demersum HOM05D007036 ORTHO05D008885 9.7e-83 311.6 291 53.3
Ca_04679_v3 Cicer arietinum L. HOM05D007036 ORTHO05D008885 9.7e-83 311.6 225 66.2
COL.COLO4_06173 Corchorus olitorius HOM05D007036 ORTHO05D008885 8.2e-82 308.5 390 48.2
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 1.2e-80 304.7 300 50.7
Eucgr.C00064 Eucalyptus grandis HOM05D007036 ORTHO05D008885 1.3e-79 301.2 248 60.9
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 4.5e-72 276.2 203 64.5
Lj5A765T51 Lonicera japonica HOM05D007036 ORTHO05D008885 1.2e-59 235.0 183 65.0
Dinv26474 Davidia involucrata HOM05D007036 ORTHO05D008885 4.0e-52 209.9 245 46.1
Oeu028822.1 Olea europaea HOM05D007036 ORTHO05D008885 6.0e-48 196.1 153 62.7
vmacro20769 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 8.9e-44 182.2 345 33.6
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 1.6e-40 171.4 199 46.7
Sabra06G0059400 Salix brachista HOM05D007036 ORTHO05D008885 4.3e-38 163.3 176 52.3
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 2.3e-36 157.5 167 47.9
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 8.9e-36 155.6 380 29.2
AagrBONN_evm.TU.Sc2ySwM_228.1431 Anthoceros agrestis HOM05D007036 ORTHO05D008885 7.8e-24 115.9 166 38.0
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 6.9e-20 102.8 245 30.6
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 2.4e-17 94.4 174 35.1
Gohir.A09G207900 Gossypium hirsutum HOM05D007897 ORTHO05D010061 1.3e-15 88.6 255 31.0
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 1.1e-14 85.5 193 35.2
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 1.9e-14 84.7 193 34.7
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 5.6e-14 83.2 193 33.7
Eucgr.L00640 Eucalyptus grandis HOM05D007897 ORTHO05D010061 1.1e-12 79.0 241 28.2
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 5.3e-12 76.6 188 31.9
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 6.9e-12 76.3 193 31.1
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 6.9e-12 76.3 189 31.7
FAN25G0874 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.5e-11 75.1 308 23.7
Thecc.04G191100 Theobroma cacao HOM05D007897 ORTHO05D010061 2.0e-11 74.7 192 28.1
Haze_11681 Corylus avellana HOM05D007897 ORTHO05D010061 9.9e-11 72.4 193 30.6
FAN25G0122 Fragaria x ananassa HOM05D000001 ORTHO05D000003 9.9e-11 72.4 286 22.7
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 1.7e-10 71.6 179 30.7
Carub.0007s2820 Capsella rubella HOM05D007897 ORTHO05D010061 2.2e-10 71.2 182 30.8
FAN16G1783 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.2e-10 71.2 308 23.7
Cfa008662 Carpinus fangiana HOM05D007897 ORTHO05D010061 2.9e-10 70.9 193 30.6
Nn1g02889 Nelumbo nucifera HOM05D000001 ORTHO05D000003 2.9e-10 70.9 280 25.4
Gohir.D09G201400 Gossypium hirsutum HOM05D007897 ORTHO05D010061 6.4e-10 69.7 245 28.6
Gorai.006G225200 Gossypium raimondii HOM05D007897 ORTHO05D010061 6.4e-10 69.7 245 28.6
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 6.4e-10 69.7 192 28.1
FAN21G2622 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.1e-09 68.9 308 23.4
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 1.9e-09 68.2 193 29.5
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 1.9e-09 68.2 193 29.5
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 1.9e-09 68.2 198 28.3
FvH4_3g28010 Fragaria vesca HOM05D000001 ORTHO05D000003 3.2e-09 67.4 286 22.7
FAN11G1860 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.2e-09 67.4 286 22.7
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 3.2e-09 67.4 185 29.7
Prupe.4G268300 Prunus persica HOM05D000001 ORTHO05D000003 3.2e-09 67.4 311 22.2
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 3.2e-09 67.4 195 26.2
ECA248G1461 Erigeron canadensis HOM05D007897 ORTHO05D010061 4.2e-09 67.0 200 30.0
Aqoxy2G03684 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 7.1e-09 66.2 342 23.1
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 7.1e-09 66.2 154 30.5
CiPaw.02G062400 Carya illinoinensis HOM05D007897 ORTHO05D010061 7.1e-09 66.2 186 30.6
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 7.1e-09 66.2 195 26.7
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 1.6e-08 65.1 196 29.6
CARHR220230 Cardamine hirsuta HOM05D007897 ORTHO05D010061 2.7e-08 64.3 190 29.5
TAR633G2792 Trochodendron aralioides HOM05D007897 ORTHO05D010061 2.7e-08 64.3 189 27.5
HPP92_007232 Vanilla planifolia HOM05D007897 ORTHO05D010061 3.5e-08 63.9 188 30.3
Cpa.g.sc157.16 Carica papaya HOM05D007897 ORTHO05D010061 4.6e-08 63.5 197 27.9
Ciclev10004784m.g Citrus clementina HOM05D007897 ORTHO05D010061 4.6e-08 63.5 182 29.7
Potri.016G086100 Populus trichocarpa HOM05D005622 ORTHO05D002854 4.6e-08 63.5 259 21.2
arahy.Tifrunner.gnm1.ann1.FEEJ53 Arachis hypogaea HOM05D006258 ORTHO05D007961 6.0e-08 63.2 315 21.9
Lalb_Chr06g0172791 Lupinus albus HOM05D006258 ORTHO05D007961 6.0e-08 63.2 313 21.7
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 6.0e-08 63.2 163 30.7
arahy.Tifrunner.gnm1.ann1.MTM7TL Arachis hypogaea HOM05D006258 ORTHO05D007961 1.0e-07 62.4 315 22.2
Medtr6g034745 Medicago truncatula HOM05D007036 ORTHO05D008885 1.0e-07 62.4 47 57.4
QL06p027281 Quercus lobata HOM05D007897 ORTHO05D010061 1.0e-07 62.4 182 28.6
Aa31LG10G8340 Aethionema arabicum HOM05D001779 ORTHO05D001753 1.3e-07 62.0 111 33.3
Atru.chr3.1764 Acer truncatum HOM05D007897 ORTHO05D010061 1.8e-07 61.6 177 29.4
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 1.8e-07 61.6 197 25.9
Lsat_1_v5_gn_8_137321 Lactuca sativa HOM05D000001 ORTHO05D000003 2.3e-07 61.2 284 23.9
FAN06G3831 Fragaria x ananassa HOM05D001779 ORTHO05D001753 3.0e-07 60.8 152 30.3
MD04G1021700 Malus domestica HOM05D007897 ORTHO05D010061 3.9e-07 60.5 172 28.5
Zm00001eb001020 Zea mays HOM05D001779 ORTHO05D001753 3.9e-07 60.5 167 31.7
THA.LOC104808674 Tarenaya hassleriana HOM05D007897 ORTHO05D010061 6.7e-07 59.7 181 29.8
FvH4_7g01420 Fragaria vesca HOM05D001779 ORTHO05D001753 8.7e-07 59.3 152 29.6
RcHm_v2.0_Chr1g0317271 Rosa chinensis HOM05D001779 ORTHO05D001753 1.1e-06 58.9 152 28.3
ECA232G2455 Erigeron canadensis HOM05D000001 ORTHO05D009971 1.5e-06 58.5 261 22.6
RcHm_v2.0_Chr4g0412521 Rosa chinensis HOM05D007897 ORTHO05D010061 1.5e-06 58.5 150 28.7
Aa31LG4G9120 Aethionema arabicum HOM05D000001 ORTHO05D009433 1.9e-06 58.2 266 22.2
MSTRG.23465 Avicennia marina HOM05D000001 ORTHO05D009083 1.9e-06 58.2 300 24.0
COL.COLO4_04875 Corchorus olitorius HOM05D001779 ORTHO05D001753 1.9e-06 58.2 169 30.2
FAN01G1074 Fragaria x ananassa HOM05D001779 ORTHO05D001753 1.9e-06 58.2 152 28.9
FAN03G3349 Fragaria x ananassa HOM05D001779 ORTHO05D001753 2.5e-06 57.8 152 29.6
FAN22G1341 Fragaria x ananassa HOM05D007897 ORTHO05D010061 2.5e-06 57.8 298 23.2
CBR_g10841 Chara braunii HOM05D001779 ORTHO05D001753 3.3e-06 57.4 115 27.8
ClCG08G010340 Citrullus lanatus HOM05D005622 ORTHO05D002854 3.3e-06 57.4 164 22.6
Medtr3g033040 Medicago truncatula HOM05D001779 ORTHO05D001753 3.3e-06 57.4 111 31.5
Ciclev10033964m.g Citrus clementina HOM05D005622 ORTHO05D002854 7.4e-06 56.2 143 24.5
HanXRQChr17g0535531 Helianthus annuus HOM05D007897 ORTHO05D010061 7.4e-06 56.2 196 25.0
TPR.G28387 Trifolium pratense HOM05D001779 ORTHO05D001753 7.4e-06 56.2 111 31.5
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 9.6e-06 55.8 151 29.1
HanXRQChr01g0022031 Helianthus annuus HOM05D007897 ORTHO05D010061 9.6e-06 55.8 194 25.3
MD10G1338000 Malus domestica HOM05D002244 ORTHO05D002269 9.6e-06 55.8 82 40.2


User provided reference genes

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