Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0123000 Salix brachista HOM05D005411 ORTHO05D006463 8.6e-45 183.3 96 100.0
Sabra17G0003100 Salix brachista HOM05D005411 ORTHO05D006463 7.2e-44 180.3 96 99.0
Sabra17G0003800 Salix brachista HOM05D005411 ORTHO05D006463 7.2e-44 180.3 96 99.0
Sabra14G0123800 Salix brachista HOM05D005411 ORTHO05D006463 1.0e-42 176.4 96 96.9
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 2.8e-35 151.8 88 90.9
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 1.8e-34 149.1 88 88.6
Sabra11G0012500 Salix brachista HOM05D005411 ORTHO05D006463 7.5e-33 143.7 79 94.9
Sabra17G0034500 Salix brachista HOM05D005411 ORTHO05D006463 2.2e-32 142.1 82 90.2
Sabra05G0164800 Salix brachista HOM05D005411 ORTHO05D006463 1.1e-31 139.8 79 92.4
Potri.003G127900 Populus trichocarpa HOM05D005411 ORTHO05D006463 2.3e-26 122.1 87 72.4
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 5.2e-18 94.4 97 55.7
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 1.7e-16 89.4 96 53.1
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 6.4e-16 87.4 92 53.3
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 7.1e-15 84.0 92 51.1
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 1.6e-14 82.8 88 54.5
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 3.5e-14 81.6 92 50.0
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 3.5e-14 81.6 92 56.5
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 7.8e-14 80.5 83 55.4
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 7.8e-14 80.5 79 54.4
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 1.3e-13 79.7 93 51.6
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 1.3e-13 79.7 91 49.5
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 1.7e-13 79.3 96 50.0
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 2.3e-13 79.0 87 49.4
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 3.0e-13 78.6 96 50.0
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 3.3e-12 75.1 96 47.9
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 4.3e-12 74.7 87 49.4
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 5.6e-12 74.3 88 46.6
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 9.6e-12 73.6 77 53.2
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 1.6e-11 72.8 77 51.9
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 2.1e-11 72.4 89 48.3
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 4.7e-11 71.2 50 70.0
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 4.7e-11 71.2 50 70.0
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 4.7e-11 71.2 96 45.8
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 1.4e-10 69.7 61 59.0
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 1.4e-10 69.7 87 47.1
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 2.4e-10 68.9 80 51.2
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 4.0e-10 68.2 61 57.4
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 4.0e-10 68.2 89 47.2
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 5.2e-10 67.8 72 51.4
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 8.9e-10 67.0 89 46.1
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 8.9e-10 67.0 54 64.8
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 8.9e-10 67.0 54 64.8
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 8.9e-10 67.0 89 44.9
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 8.9e-10 67.0 93 46.2
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 1.5e-09 66.2 99 43.4
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 1.5e-09 66.2 47 70.2
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.5e-09 66.2 92 40.2
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 2.0e-09 65.9 84 44.0
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 2.0e-09 65.9 46 67.4
Oeu047371.1 Olea europaea HOM05D005411 ORTHO05D006463 2.0e-09 65.9 51 62.7
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 2.0e-09 65.9 47 70.2
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 2.6e-09 65.5 45 68.9
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 3.4e-09 65.1 48 64.6
SHI07138 Sapria himalayana HOM05D005411 ORTHO05D006463 3.4e-09 65.1 58 55.2
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 4.4e-09 64.7 89 50.6
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 4.4e-09 64.7 89 43.8
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 4.4e-09 64.7 47 68.1
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 4.4e-09 64.7 47 68.1
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 5.8e-09 64.3 82 43.9
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 7.6e-09 63.9 45 68.9
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 7.6e-09 63.9 57 56.1
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 7.6e-09 63.9 69 52.2
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 9.9e-09 63.5 94 44.7
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 9.9e-09 63.5 62 54.8
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 1.3e-08 63.2 55 58.2
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 1.7e-08 62.8 81 44.4
COL.COLO4_34468 Corchorus olitorius HOM05D005411 ORTHO05D006463 2.2e-08 62.4 82 42.7
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 2.2e-08 62.4 57 54.4
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 2.9e-08 62.0 80 46.2
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 2.9e-08 62.0 75 52.0
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 2.9e-08 62.0 49 59.2
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 2.9e-08 62.0 49 59.2
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 3.8e-08 61.6 47 61.7
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 4.9e-08 61.2 97 43.3
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 6.4e-08 60.8 79 48.1
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 6.4e-08 60.8 48 62.5
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 6.4e-08 60.8 44 65.9
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 6.4e-08 60.8 96 40.6
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 6.4e-08 60.8 55 60.0
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 6.4e-08 60.8 50 60.0
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 8.4e-08 60.5 83 45.8
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 8.4e-08 60.5 83 45.8
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 1.1e-07 60.1 51 58.8
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 1.1e-07 60.1 75 48.0
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 1.1e-07 60.1 85 42.4
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 1.1e-07 60.1 51 56.9
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 1.1e-07 60.1 78 39.7
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 1.9e-07 59.3 78 44.9
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 1.9e-07 59.3 75 50.7
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 2.4e-07 58.9 89 42.7
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 2.4e-07 58.9 67 50.7
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 2.4e-07 58.9 89 42.7
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 2.4e-07 58.9 89 42.7
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 2.4e-07 58.9 45 62.2
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 2.4e-07 58.9 73 45.2
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 3.2e-07 58.5 53 60.4
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 3.2e-07 58.5 53 60.4
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 3.2e-07 58.5 53 60.4
BcaB05g22557 Brassica carinata HOM05D002513 ORTHO05D002720 4.2e-07 58.2 54 61.1
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 4.2e-07 58.2 70 45.7
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 4.2e-07 58.2 76 46.1
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 5.4e-07 57.8 79 45.6
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 5.4e-07 57.8 61 50.8
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 7.1e-07 57.4 70 45.7
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 7.1e-07 57.4 87 43.7
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 9.3e-07 57.0 79 43.0
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 1.2e-06 56.6 58 51.7
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 2.1e-06 55.8 54 55.6
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 2.7e-06 55.5 88 43.2
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 2.7e-06 55.5 88 43.2
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 2.7e-06 55.5 91 38.5
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 2.7e-06 55.5 91 38.5
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 3.5e-06 55.1 54 57.4
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 3.5e-06 55.1 54 57.4
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 3.5e-06 55.1 42 61.9
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 7.8e-06 53.9 48 56.2


User provided reference genes

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