Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 0.0e+00 1275.8 645 100.0
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 7.3e-257 890.6 539 85.0
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 2.6e-214 749.2 547 70.9
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 3.3e-201 705.7 540 67.0
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 6.3e-200 701.4 431 83.5
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 2.4e-199 699.5 537 68.0
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 2.6e-198 696.0 543 66.5
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 1.3e-197 693.7 548 67.2
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 1.3e-197 693.7 519 69.4
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 3.6e-195 685.6 550 66.4
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 3.6e-195 685.6 546 65.6
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 3.6e-195 685.6 546 65.4
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 9.7e-193 677.6 516 68.0
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 1.3e-192 677.2 536 64.6
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.7e-192 676.8 544 65.3
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.8e-191 673.3 543 65.0
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 4.1e-191 672.2 544 64.5
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 3.5e-190 669.1 546 62.8
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 7.7e-190 667.9 559 62.6
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 7.7e-190 667.9 540 63.9
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 1.0e-189 667.5 535 65.2
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 1.3e-189 667.2 552 63.9
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 2.2e-189 666.4 549 63.6
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 2.2e-189 666.4 542 64.2
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 2.9e-189 666.0 535 65.0
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 2.5e-188 662.9 534 64.6
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 5.5e-188 661.8 548 63.5
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 2.7e-187 659.4 532 64.1
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 3.0e-186 656.0 482 69.1
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 4.0e-186 655.6 516 65.3
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 4.0e-186 655.6 534 64.4
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 4.0e-186 655.6 547 63.4
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 5.7e-185 651.7 534 62.7
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 5.7e-185 651.7 544 63.8
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 9.7e-185 651.0 535 62.2
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 1.4e-183 647.1 534 63.9
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 2.4e-183 646.4 548 61.3
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 5.3e-183 645.2 533 63.2
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 4.5e-182 642.1 511 64.2
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 1.0e-181 641.0 536 61.9
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 1.3e-181 640.6 539 63.1
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 2.2e-181 639.8 511 65.2
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 5.5e-180 635.2 542 62.4
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 1.6e-179 633.6 534 62.0
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 3.6e-179 632.5 533 61.9
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.1e-179 631.7 538 61.0
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 8.0e-179 631.3 562 58.2
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.8e-178 630.2 537 62.4
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 8.8e-178 627.9 496 64.9
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 2.0e-177 626.7 513 62.4
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 3.4e-177 625.9 541 60.8
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 3.4e-177 625.9 540 59.1
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 1.7e-176 623.6 541 62.1
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 2.2e-176 623.2 538 60.2
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 2.2e-176 623.2 494 63.8
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 2.2e-176 623.2 546 60.3
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 2.4e-175 619.8 561 57.9
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 1.2e-174 617.5 496 62.9
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 1.6e-174 617.1 493 63.3
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 2.0e-174 616.7 547 58.1
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 1.0e-173 614.4 571 56.6
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 1.3e-173 614.0 537 59.4
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 2.3e-173 613.2 539 59.9
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 4.2e-172 609.0 546 58.1
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 4.2e-172 609.0 539 58.8
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 3.0e-170 602.8 540 58.9
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 5.7e-169 598.6 519 58.8
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.3e-168 597.4 540 57.6
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.7e-168 597.0 496 63.3
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 1.7e-168 597.0 536 59.1
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 2.8e-168 596.3 529 59.4
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 6.3e-168 595.1 551 57.7
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 5.4e-167 592.0 623 53.0
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 7.0e-167 591.7 537 57.7
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 7.8e-166 588.2 544 55.9
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 2.5e-164 583.2 559 56.5
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 2.5e-164 583.2 529 58.0
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 6.8e-162 575.1 494 60.9
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 1.4e-159 567.4 531 59.5
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 1.2e-155 554.3 550 51.8
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 7.5e-153 545.0 541 57.7
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 2.9e-152 543.1 551 52.8
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 2.4e-151 540.0 520 55.2
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 2.3e-149 533.5 504 54.2
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.3e-149 533.5 533 55.0
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 1.5e-148 530.8 526 54.0
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 5.6e-148 528.9 530 53.0
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 1.6e-147 527.3 506 55.9
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 2.1e-147 526.9 541 52.5
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.2e-145 521.2 534 53.4
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 6.4e-144 515.4 500 54.6
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.4e-143 514.2 534 53.2
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 1.9e-143 513.8 489 55.6
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 3.2e-143 513.1 527 51.0
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.6e-142 509.2 514 54.3
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 1.0e-141 508.1 499 53.5
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 4.3e-140 502.7 544 52.0
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 5.6e-140 502.3 503 52.9
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 4.9e-136 489.2 408 63.7
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 2.1e-134 483.8 328 73.2
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.3e-133 481.1 515 49.5
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 6.6e-133 478.8 540 48.3
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 1.1e-132 478.0 487 54.0
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.9e-132 477.2 447 58.4
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 3.3e-132 476.5 469 52.2
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 3.6e-131 473.0 495 50.7
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 3.8e-128 463.0 496 50.8
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 6.0e-126 455.7 537 51.4
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 6.0e-126 455.7 457 54.9
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.5e-124 450.3 543 49.7
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 2.0e-121 440.7 444 51.8
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 2.6e-121 440.3 524 46.6
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 8.4e-120 435.3 565 44.4
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 4.2e-119 433.0 342 65.2
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 4.2e-119 433.0 464 48.9
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 4.6e-118 429.5 330 63.6
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 4.8e-115 419.5 399 58.1
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 6.2e-115 419.1 333 61.9
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 1.1e-114 418.3 505 45.0
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 2.4e-114 417.2 342 61.1
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 6.9e-114 415.6 338 57.1
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 8.4e-112 408.7 344 57.6
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 1.3e-104 384.8 273 68.9
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 8.2e-99 365.5 239 75.7
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.4e-98 364.8 290 62.8
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 4.2e-95 353.2 447 47.7
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 7.9e-94 349.0 654 34.1
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.0e-89 334.3 275 56.0
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 7.2e-87 325.9 362 51.1
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 9.1e-82 308.9 304 54.3
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.4e-79 301.6 342 45.9
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 4.4e-68 263.5 469 36.9
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 1.7e-67 261.5 272 53.3
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 7.0e-66 256.1 612 31.7
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 6.5e-64 249.6 245 52.7
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.3e-59 235.3 195 58.5
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 4.8e-59 233.4 236 51.3
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 7.5e-52 209.5 483 33.7
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 9.8e-52 209.1 174 64.4
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 9.8e-52 209.1 146 72.6
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 3.6e-46 190.7 152 64.5
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 2.3e-45 188.0 198 53.0
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 1.5e-44 185.3 102 83.3
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 3.4e-44 184.1 141 63.8
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 1.3e-43 182.2 189 52.9
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 3.7e-43 180.6 101 83.2
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 3.2e-42 177.6 102 82.4
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 9.5e-39 166.0 198 46.0
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.1e-37 162.5 171 46.2
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 5.4e-34 150.2 143 56.6
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 2.1e-33 148.3 125 56.0
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 4.6e-33 147.1 123 60.2
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.3e-31 139.8 101 63.4
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 7.3e-31 139.8 125 54.4
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 5.4e-26 123.6 76 69.7
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.4e-21 108.2 123 47.2
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 8.9e-21 106.3 73 65.8
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.3e-16 91.7 62 66.1
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 2.3e-16 91.7 66 60.6
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 4.3e-15 87.4 73 61.6
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 4.3e-15 87.4 73 58.9
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 1.1e-10 72.8 63 58.7


User provided reference genes

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