Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra18G0117200 Salix brachista HOM05D006842 ORTHO05D008908 0.0e+00 1216.4 993 100.0
Potri.018G143800 Populus trichocarpa HOM05D006842 ORTHO05D008908 0.0e+00 1129.8 993 95.4
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 4.8e-191 672.5 993 69.3
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 2.5e-187 660.2 995 71.2
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 4.7e-186 656.0 990 71.4
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 1.0e-180 638.3 988 68.1
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 1.0e-177 628.2 993 71.1
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 1.4e-177 627.9 988 67.9
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 1.1e-171 608.2 989 67.8
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 3.2e-171 606.7 989 67.7
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 4.7e-170 602.8 989 70.0
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 1.4e-166 591.3 989 70.0
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 5.4e-166 589.3 984 66.2
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 2.8e-162 577.0 883 73.2
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 4.0e-161 573.2 986 65.2
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 4.1e-158 563.1 977 66.8
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 1.1e-155 555.1 991 65.8
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 1.9e-155 554.3 919 69.4
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 3.3e-155 553.5 993 67.0
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 4.3e-155 553.1 991 65.3
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 8.9e-153 545.4 927 68.4
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 1.7e-151 541.2 991 65.3
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 1.8e-150 537.7 989 64.4
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 5.9e-149 532.7 984 63.4
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 1.3e-148 531.6 992 65.1
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 1.6e-146 524.6 986 63.7
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 4.7e-146 523.1 986 62.6
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 3.5e-141 506.9 961 66.1
Rhsim01G0118900 Rhododendron simsii HOM05D006842 ORTHO05D008908 1.7e-140 504.6 976 52.8
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 5.6e-139 499.6 992 63.8
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 2.1e-138 497.7 985 58.3
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 2.8e-138 497.3 980 63.4
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 1.1e-137 495.4 891 68.5
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 4.9e-135 486.5 978 57.8
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 2.4e-134 484.2 978 57.7
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 2.4e-134 484.2 987 62.9
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 1.3e-132 478.4 977 55.9
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 3.9e-132 476.9 987 63.4
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 1.5e-131 474.9 994 60.4
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 1.2e-130 471.9 990 60.1
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 8.1e-130 469.2 992 60.3
MELO3C003981.2 Cucumis melo HOM05D006842 ORTHO05D008908 6.8e-129 466.1 991 63.0
Oeu018814.3 Olea europaea HOM05D006842 ORTHO05D008908 1.5e-128 464.9 988 63.1
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 7.6e-128 462.6 648 63.4
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 3.3e-123 447.2 988 61.5
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 1.6e-122 444.9 939 61.3
Migut.L01888 Erythranthe guttata HOM05D006842 ORTHO05D008908 4.0e-121 440.3 972 61.5
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 8.4e-119 432.6 975 60.5
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 2.3e-116 424.5 992 50.6
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 3.0e-116 424.1 831 62.3
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 7.6e-112 409.5 977 60.2
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 9.9e-112 409.1 666 58.0
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 1.1e-110 405.6 990 58.1
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 1.1e-110 405.6 679 65.1
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 2.7e-109 401.0 977 59.2
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 1.3e-108 398.7 678 62.5
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 1.9e-107 394.8 991 59.7
Nitab4.5_0007383g0050 Nicotiana tabacum HOM05D006842 ORTHO05D008908 2.1e-106 391.3 968 60.4
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 1.8e-105 388.3 980 60.3
Peaxi162Scf00528g00082 Petunia axillaris HOM05D006842 ORTHO05D008908 2.4e-105 387.9 927 61.5
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 6.9e-105 386.3 915 58.1
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 4.9e-103 380.2 969 58.3
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 9.3e-102 375.9 965 60.2
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 1.0e-100 372.5 973 59.5
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 8.7e-100 369.4 976 45.4
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 1.3e-98 365.5 927 61.6
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 6.2e-98 363.2 672 56.5
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 1.8e-97 361.7 673 55.9
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 5.3e-97 360.1 674 56.5
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 2.6e-96 357.8 672 55.4
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 1.3e-95 355.5 672 55.5
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 2.4e-89 334.7 978 54.2
MBI13_g31535_MAGBIO Magnolia biondii HOM05D006842 ORTHO05D008908 1.5e-88 332.0 1017 57.9
PGSC0003DMG400018607 Solanum tuberosum HOM05D006842 ORTHO05D008908 2.0e-88 331.6 980 56.7
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 5.7e-83 313.5 667 51.7
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 5.7e-83 313.5 667 51.7
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 4.5e-80 303.9 671 50.1
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 1.4e-78 298.9 640 50.2
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 3.1e-73 281.2 971 51.6
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 2.2e-71 275.0 670 55.1
SalBow5G4345 Salvia bowleyana HOM05D006842 ORTHO05D008908 2.9e-71 274.6 921 57.3
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 4.2e-70 270.8 681 52.1
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 4.2e-70 270.8 678 51.6
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 3.6e-69 267.7 333 47.7
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 6.1e-69 266.9 995 56.1
ECA240G2145 Erigeron canadensis HOM05D006842 ORTHO05D008908 1.1e-57 229.6 925 56.6
Manes.14G159800 Manihot esculenta HOM05D006842 ORTHO05D008908 1.6e-53 215.7 481 66.5
HPP92_027423 Vanilla planifolia HOM05D006842 ORTHO05D008908 5.2e-52 210.7 342 34.8
Glyma.09G058602 Glycine max HOM05D006842 ORTHO05D008908 1.9e-46 192.2 169 56.2
RcHm_v2.0_Chr2g0131261 Rosa chinensis HOM05D006842 ORTHO05D008908 9.8e-43 179.9 171 50.3
MD16G1250300 Malus domestica HOM05D006842 ORTHO05D008908 4.9e-42 177.6 127 66.9
CDE02G4182 Ceratophyllum demersum HOM05D006842 ORTHO05D008908 7.0e-41 173.7 580 47.4
Os01g0263400 Oryza sativa ssp. japonica HOM05D006842 ORTHO05D008908 1.2e-37 162.9 647 44.4
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 7.3e-30 137.1 626 44.4
Glyma.09G058502 Glycine max HOM05D006842 ORTHO05D008908 1.1e-28 133.3 161 48.4
MD16G1250400 Malus domestica HOM05D006842 ORTHO05D008908 5.8e-27 127.5 242 35.1
Hund08945 Selenicereus undatus HOM05D006842 ORTHO05D008908 1.9e-25 122.5 452 60.4
Sc08g0004670 Simmondsia chinensis HOM05D006842 ORTHO05D008908 9.2e-25 120.2 451 59.9
Ah.14g084430 Amaranthus hybridus HOM05D006842 ORTHO05D008908 4.6e-24 117.9 450 59.8
Zm00001eb128320 Zea mays HOM05D006842 ORTHO05D008908 1.7e-23 115.9 531 53.1
MD16G1250600 Malus domestica HOM05D006842 ORTHO05D008908 8.9e-20 103.6 146 43.2
AUR62028364 Chenopodium quinoa HOM05D006842 ORTHO05D008908 1.5e-19 102.8 410 63.7
AUR62025363 Chenopodium quinoa HOM05D006842 ORTHO05D008908 1.7e-18 99.4 409 63.3
Nitab4.5_0007383g0080 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.6e-16 92.8 204 29.9
Nn8g40884 Nelumbo nucifera HOM05D006842 ORTHO05D008908 7.8e-16 90.5 155 39.4
Medtr3g103990 Medicago truncatula HOM05D006842 ORTHO05D008908 2.4e-12 79.0 96 40.6
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 1.1e-09 70.1 172 24.4
AUR62039733 Chenopodium quinoa HOM05D006842 ORTHO05D008908 1.4e-09 69.7 95 43.2
FAN18G2707 Fragaria x ananassa HOM05D002453 ORTHO05D002107 3.0e-07 62.0 134 28.4
FvH4_5g15040 Fragaria vesca HOM05D002453 ORTHO05D002107 5.1e-07 61.2 134 28.4
SalBow3G1046 Salvia bowleyana HOM05D000162 ORTHO05D000090 8.7e-07 60.5 152 25.0
FAN08G1232 Fragaria x ananassa HOM05D002453 ORTHO05D002107 1.5e-06 59.7 134 27.6
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 1.9e-06 59.3 126 31.0
Hma1.2p1_0149F.1_g066330 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 2.5e-06 58.9 162 27.8
SalBow3G4453 Salvia bowleyana HOM05D000162 ORTHO05D000090 3.3e-06 58.5 152 25.0
CiPaw.01G066800 Carya illinoinensis HOM05D003900 ORTHO05D005009 4.3e-06 58.2 83 37.3
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 4.3e-06 58.2 176 27.8
SMO367G1176 Selaginella moellendorffii HOM05D009701 ORTHO05D000003 4.3e-06 58.2 107 34.6
Atru.chr13.2266 Acer truncatum HOM05D000001 ORTHO05D000003 5.6e-06 57.8 192 26.0
MBI07_g40343_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 5.6e-06 57.8 163 25.2
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 5.6e-06 57.8 123 30.1
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 7.3e-06 57.4 142 28.2
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 7.3e-06 57.4 135 31.1
CAN.G855.39 Capsicum annuum HOM05D002825 ORTHO05D003824 7.3e-06 57.4 214 22.9
BraA03t09431Z Brassica rapa HOM05D007455 ORTHO05D009431 9.6e-06 57.0 142 28.2
Migut.G01107 Erythranthe guttata HOM05D007212 ORTHO05D009094 9.6e-06 57.0 145 29.0
Migut.G01143 Erythranthe guttata HOM05D007212 ORTHO05D009094 9.6e-06 57.0 145 29.0
Thhalv10022574m.g Eutrema salsugineum HOM05D005287 ORTHO05D006893 9.6e-06 57.0 129 31.0
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 9.6e-06 57.0 107 28.0
Nitab4.5_0003261g0020 Nicotiana tabacum HOM05D006842 ORTHO05D008908 9.6e-06 57.0 43 55.8


User provided reference genes

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